Wall clock time and date at job start Sat Apr 11 2020 02:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21289 * 119.99982 * 2 1 4 4 N 1.34783 * 119.99992 * 179.97438 * 2 1 3 5 5 C 1.39952 * 119.99852 * 184.52909 * 4 2 1 6 6 C 1.38637 * 120.00321 * 326.26673 * 5 4 2 7 7 C 1.39451 * 119.78041 * 179.97438 * 6 5 4 8 8 C 1.47857 * 120.11075 * 179.97438 * 7 6 5 9 9 O 1.21547 * 120.00333 * 0.02625 * 8 7 6 10 10 N 1.34781 * 119.99883 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99571 * 180.02562 * 10 8 7 12 12 C 1.50709 * 109.46616 * 180.02562 * 11 10 8 13 13 C 1.30997 * 120.00202 * 127.32216 * 12 11 10 14 14 C 1.50697 * 119.99850 * 7.48442 * 13 12 11 15 15 N 1.46493 * 109.47663 * 127.03223 * 14 13 12 16 16 C 1.36933 * 120.00649 * 179.97438 * 15 14 13 17 17 H 1.08007 * 119.99945 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00209 * 179.97438 * 16 15 14 19 19 N 1.31619 * 120.00284 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99849 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47170 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47042 * 119.99975 * 20 18 16 23 23 H 1.48493 * 109.47232 * 240.00123 * 20 18 16 24 24 C 1.39615 * 119.77804 * 0.02562 * 7 6 5 25 25 C 1.37975 * 119.99729 * 0.27731 * 24 7 6 26 26 C 1.38255 * 120.22275 * 359.46547 * 25 24 7 27 27 C 1.50702 * 119.89003 * 180.24149 * 26 25 24 28 28 H 1.09007 * 109.47711 * 270.00496 * 1 2 3 29 29 H 1.09001 * 109.46986 * 30.00673 * 1 2 3 30 30 H 1.09000 * 109.47145 * 150.00416 * 1 2 3 31 31 H 0.96997 * 119.99630 * 4.53274 * 4 2 1 32 32 H 1.08000 * 120.10614 * 0.02562 * 6 5 4 33 33 H 0.96998 * 119.99926 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47513 * 299.99791 * 11 10 8 35 35 H 1.08992 * 109.47337 * 60.00390 * 11 10 8 36 36 H 1.08004 * 119.99371 * 307.31591 * 12 11 10 37 37 H 1.07996 * 119.99870 * 187.47527 * 13 12 11 38 38 H 1.09010 * 109.46869 * 247.02883 * 14 13 12 39 39 H 1.09005 * 109.47223 * 7.02409 * 14 13 12 40 40 H 0.97004 * 119.99901 * 359.97438 * 15 14 13 41 41 H 0.96994 * 119.99766 * 179.97438 * 19 18 16 42 42 H 1.08005 * 120.00335 * 179.97438 * 24 7 6 43 43 H 1.08003 * 119.88997 * 179.72493 * 25 24 7 44 44 H 1.09004 * 109.46888 * 270.26814 * 27 26 25 45 45 H 1.08992 * 109.47524 * 30.27091 * 27 26 25 46 46 H 1.09004 * 109.46799 * 150.27986 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5771 -1.1691 0.0962 6 6 4.3129 -0.1463 -0.4820 7 6 5.7040 -0.1524 -0.3834 8 6 6.4960 0.9345 -0.9979 9 8 5.9348 1.8356 -1.5898 10 7 7.8403 0.9260 -0.9016 11 6 8.6250 2.0033 -1.5100 12 6 10.0912 1.7588 -1.2613 13 6 10.9343 1.7573 -2.2638 14 6 10.4709 2.1649 -3.6386 15 7 11.3514 3.2131 -4.1601 16 6 11.1245 3.7429 -5.4022 17 1 10.2959 3.3882 -5.9974 18 6 11.9586 4.7365 -5.8960 19 7 12.9679 5.1692 -5.1705 20 14 11.6493 5.4586 -7.5909 21 1 10.4618 4.8057 -8.1980 22 1 11.4033 6.9181 -7.4697 23 1 12.8367 5.2267 -8.4519 24 6 6.3463 -1.1889 0.2966 25 6 5.6053 -2.2055 0.8633 26 6 4.2259 -2.1966 0.7700 27 6 3.4237 -3.3079 1.3965 28 1 -0.3635 0.0001 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6981 -2.0060 -0.0655 32 1 3.8105 0.6530 -1.0065 33 1 8.2882 0.2067 -0.4295 34 1 8.4380 2.0273 -2.5835 35 1 8.3355 2.9572 -1.0693 36 1 10.4467 1.5850 -0.2563 37 1 11.9615 1.4640 -2.1051 38 1 10.5011 1.3012 -4.3031 39 1 9.4502 2.5432 -3.5807 40 1 12.0953 3.5320 -3.6254 41 1 13.5510 5.8632 -5.5157 42 1 7.4234 -1.1975 0.3749 43 1 6.1042 -3.0087 1.3851 44 1 3.2901 -4.1121 0.6728 45 1 3.9518 -3.6894 2.2702 46 1 2.4486 -2.9261 1.6992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321069217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:52:49 Heat of formation + Delta-G solvation = -9.402098 kcal Electronic energy + Delta-G solvation = -26607.472627 eV Core-core repulsion = 22691.067239 eV Total energy + Delta-G solvation = -3916.405388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12486 -39.81282 -38.50290 -36.52097 -35.26057 -34.47991 -33.16386 -32.67061 -31.34494 -30.40170 -29.18185 -28.05396 -26.22736 -24.82306 -23.40777 -22.66265 -22.45012 -20.95512 -20.46945 -19.19898 -18.00047 -17.45750 -16.92619 -16.52471 -16.42261 -15.94148 -15.60491 -15.34824 -14.95871 -14.66251 -14.45495 -14.33757 -14.11982 -13.86827 -13.64426 -13.45292 -13.16742 -13.12719 -12.89373 -12.83365 -12.62743 -12.48912 -12.21323 -12.06948 -11.82608 -11.69158 -10.93414 -10.82768 -10.78214 -10.39061 -10.19580 -9.98531 -9.97221 -9.74941 -9.18862 -9.06999 -8.97148 -8.57693 -8.51095 -6.88693 -5.73954 -3.02916 0.52899 0.99269 2.11731 2.28304 2.58133 2.77759 3.36614 3.47084 3.52918 3.55377 3.64598 4.23554 4.33317 4.40188 4.64422 4.65577 4.67364 4.73680 4.85510 4.88259 5.02985 5.05014 5.10002 5.22053 5.32866 5.34322 5.43455 5.59419 5.61479 5.73595 5.82510 5.92159 5.95919 6.01390 6.03465 6.11630 6.28979 6.37451 6.57435 6.60317 6.63600 6.89323 6.90862 7.17861 7.53665 7.66469 7.74192 8.25337 8.44595 9.56033 10.11997 10.47418 11.48938 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.001946 C = 0.001800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.128777 B =14384.763799 C =15553.374829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.505 3.495 3 O -0.515 6.515 4 N -0.673 5.673 5 C 0.132 3.868 6 C -0.061 4.061 7 C -0.116 4.116 8 C 0.553 3.447 9 O -0.529 6.529 10 N -0.718 5.718 11 C 0.140 3.860 12 C -0.199 4.199 13 C -0.109 4.109 14 C 0.161 3.839 15 N -0.728 5.728 16 C -0.239 4.239 17 H 0.072 0.928 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.097 4.097 25 C -0.110 4.110 26 C -0.092 4.092 27 C -0.117 4.117 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.411 0.589 32 H 0.155 0.845 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.028 0.972 39 H 0.037 0.963 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.519 -22.692 18.296 37.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.293 3.707 3 O -0.389 6.389 4 N -0.320 5.320 5 C 0.038 3.962 6 C -0.081 4.081 7 C -0.120 4.120 8 C 0.339 3.661 9 O -0.406 6.406 10 N -0.370 5.370 11 C 0.018 3.982 12 C -0.219 4.219 13 C -0.128 4.128 14 C 0.034 3.966 15 N -0.372 5.372 16 C -0.370 4.370 17 H 0.090 0.910 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.117 4.117 25 C -0.128 4.128 26 C -0.095 4.095 27 C -0.174 4.174 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.101 0.899 31 H 0.248 0.752 32 H 0.173 0.827 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.147 0.853 43 H 0.151 0.849 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.646 -21.185 17.686 36.342 hybrid contribution 0.320 -0.241 -0.418 0.579 sum -23.326 -21.426 17.268 36.074 Atomic orbital electron populations 1.21889 0.90454 1.05444 1.05168 1.21116 0.91042 0.83160 0.75367 1.90818 1.70196 1.31160 1.46685 1.43605 1.04890 1.10037 1.73420 1.17442 0.82777 0.96863 0.99106 1.21439 0.92280 0.98257 0.96174 1.19869 0.93823 0.96419 1.01904 1.18209 0.82122 0.85523 0.80214 1.90820 1.70762 1.36751 1.42226 1.45930 1.05877 1.27850 1.57363 1.20594 0.88049 0.89753 0.99759 1.22591 0.94053 1.06612 0.98614 1.23290 0.99441 0.94423 0.95644 1.20021 0.94585 0.92246 0.89739 1.42275 1.33614 1.42976 1.18326 1.19303 1.10108 1.14984 0.92618 0.90992 1.24763 0.97947 0.99592 0.98764 1.69676 1.18697 1.32441 1.37366 0.86085 0.77286 0.78821 0.83837 1.20470 1.21797 1.21857 1.21301 1.00020 0.93429 0.96914 1.20766 0.92406 0.98919 1.00727 1.19859 0.94483 0.96972 0.98165 1.20787 0.99592 0.96151 1.00836 0.88412 0.88266 0.89895 0.75231 0.82709 0.76753 0.89167 0.90888 0.87026 0.86861 0.95399 0.94592 0.78167 0.93550 0.85303 0.84939 0.90720 0.90722 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.63 10.31 36.00 0.37 -0.26 16 2 C 0.50 4.30 7.79 -10.98 -0.09 4.21 16 3 O -0.51 -7.21 14.45 5.55 0.08 -7.13 16 4 N -0.67 -4.53 4.77 -9.89 -0.05 -4.58 16 5 C 0.13 1.26 6.30 -83.74 -0.53 0.73 16 6 C -0.06 -0.79 8.25 -38.98 -0.32 -1.11 16 7 C -0.12 -1.46 5.87 -105.00 -0.62 -2.07 16 8 C 0.55 8.48 7.77 -12.32 -0.10 8.38 16 9 O -0.53 -10.49 16.34 5.32 0.09 -10.41 16 10 N -0.72 -9.31 5.50 -62.42 -0.34 -9.65 16 11 C 0.14 2.15 5.76 -5.19 -0.03 2.12 16 12 C -0.20 -2.82 9.63 -36.02 -0.35 -3.16 16 13 C -0.11 -1.81 9.63 -36.03 -0.35 -2.15 16 14 C 0.16 3.38 6.35 -5.20 -0.03 3.34 16 15 N -0.73 -19.19 5.59 -61.09 -0.34 -19.53 16 16 C -0.24 -6.95 9.99 -15.06 -0.15 -7.11 16 17 H 0.07 2.04 7.83 -52.48 -0.41 1.63 16 18 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 19 N -0.93 -28.93 13.06 55.49 0.72 -28.21 16 20 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 C -0.10 -0.86 9.54 -39.16 -0.37 -1.23 16 25 C -0.11 -0.78 9.67 -39.67 -0.38 -1.17 16 26 C -0.09 -0.67 5.90 -104.35 -0.62 -1.28 16 27 C -0.12 -0.43 9.46 36.01 0.34 -0.09 16 28 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.41 1.17 7.78 -40.82 -0.32 0.85 16 32 H 0.16 2.47 5.71 -52.49 -0.30 2.17 16 33 H 0.40 3.78 6.49 -40.82 -0.27 3.52 16 34 H 0.09 1.59 5.30 -51.93 -0.28 1.31 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.04 0.78 5.30 -51.93 -0.27 0.50 16 40 H 0.38 10.57 7.66 -40.82 -0.31 10.26 16 41 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.13 0.82 6.40 -52.48 -0.34 0.49 16 43 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 44 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 45 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 46 H 0.06 0.19 7.13 -51.93 -0.37 -0.18 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -38.78 387.31 -8.56 -47.34 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.22 Total: 9.63 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -3.31 Total: -1.39 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -0.01 Total: -61.98 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: 0.17 Total: -17.54 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -38.78 -8.56 -47.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321069217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.935 kcal (2) G-P(sol) polarization free energy of solvation -38.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds