Wall clock time and date at job start Sat Apr 11 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38048 * 126.29166 * 2 1 4 4 C 1.47425 * 126.41328 * 0.02562 * 3 2 1 5 5 O 1.21606 * 120.00175 * 314.37803 * 4 3 2 6 6 N 1.34776 * 120.00145 * 134.38157 * 4 3 2 7 7 C 1.46857 * 120.37885 * 5.82305 * 6 4 3 8 8 C 1.53401 * 108.77910 * 237.62342 * 7 6 4 9 9 C 1.51291 * 108.42460 * 310.57847 * 8 7 6 10 10 O 1.20760 * 120.80549 * 232.93899 * 9 8 7 11 11 C 1.51297 * 118.38720 * 52.95698 * 9 8 7 12 12 C 1.46857 * 120.38334 * 185.55366 * 6 4 3 13 13 H 1.09001 * 109.58580 * 242.16006 * 12 6 4 14 14 C 1.53001 * 109.58781 * 2.58683 * 12 6 4 15 15 C 1.52996 * 117.50037 * 256.54402 * 14 12 6 16 16 C 1.52993 * 117.50090 * 187.87677 * 14 12 6 17 17 C 1.41288 * 107.16983 * 180.02562 * 3 2 1 18 18 N 1.30442 * 108.02204 * 359.97438 * 17 3 2 19 19 N 1.34257 * 126.29076 * 180.02562 * 2 1 3 20 20 C 1.46493 * 125.75423 * 359.70868 * 19 2 1 21 21 C 1.50700 * 109.47235 * 90.00474 * 20 19 2 22 22 H 1.07995 * 119.99876 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00079 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99994 * 180.02562 * 23 21 20 25 25 Si 1.86807 * 120.00076 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47003 * 89.99574 * 25 23 21 27 27 H 1.48497 * 109.46972 * 210.00153 * 25 23 21 28 28 H 1.48505 * 109.46711 * 329.99795 * 25 23 21 29 29 H 1.08996 * 109.46644 * 269.99902 * 1 2 3 30 30 H 1.09002 * 109.46871 * 29.99522 * 1 2 3 31 31 H 1.08997 * 109.47116 * 149.99522 * 1 2 3 32 32 H 1.09002 * 109.58885 * 357.41597 * 7 6 4 33 33 H 1.09005 * 109.58510 * 117.69595 * 7 6 4 34 34 H 1.09001 * 109.67046 * 70.30628 * 8 7 6 35 35 H 1.08996 * 109.67125 * 190.80574 * 8 7 6 36 36 H 1.08994 * 109.67698 * 66.77998 * 11 9 8 37 37 H 1.09003 * 109.67234 * 187.27662 * 11 9 8 38 38 H 1.09002 * 115.54435 * 42.20993 * 14 12 6 39 39 H 1.09006 * 117.49655 * 359.97438 * 15 14 12 40 40 H 1.08998 * 117.50093 * 145.02209 * 15 14 12 41 41 H 1.09002 * 117.50518 * 214.98013 * 16 14 12 42 42 H 1.09004 * 117.49973 * 359.97438 * 16 14 12 43 43 H 1.08004 * 125.98669 * 179.97438 * 17 3 2 44 44 H 1.09001 * 109.47521 * 210.00437 * 20 19 2 45 45 H 1.09001 * 109.47353 * 330.00584 * 20 19 2 46 46 H 0.97001 * 120.00202 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8859 2.5203 0.0005 5 8 1.0016 2.8821 -0.7518 6 7 2.4653 3.4062 0.8347 7 6 3.6178 3.0105 1.6544 8 6 3.2763 3.2434 3.1317 9 6 2.7217 4.6432 3.2794 10 8 3.1891 5.4118 4.0850 11 6 1.5670 5.0565 2.3934 12 6 1.9551 4.7800 0.9302 13 1 2.7294 5.4800 0.6160 14 6 0.7256 4.9341 0.0327 15 6 0.9096 5.6661 -1.2981 16 6 0.1562 6.3423 -0.1499 17 6 3.6591 0.6499 -0.0006 18 7 3.6340 -0.6543 -0.0004 19 7 2.3017 -1.0821 -0.0005 20 6 1.8501 -2.4757 0.0049 21 6 1.6895 -2.9573 -1.4140 22 1 1.9030 -2.2919 -2.2374 23 6 1.2712 -4.2477 -1.6609 24 7 1.1315 -4.6681 -2.8992 25 14 0.9027 -5.3988 -0.2366 26 1 -0.5270 -5.2726 0.1447 27 1 1.1843 -6.7983 -0.6456 28 1 1.7579 -5.0404 0.9234 29 1 -0.3632 0.0000 1.0276 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 3.8366 1.9551 1.4919 33 1 4.4853 3.6102 1.3788 34 1 2.5304 2.5171 3.4548 35 1 4.1766 3.1389 3.7372 36 1 0.6792 4.4810 2.6553 37 1 1.3666 6.1200 2.5242 38 1 0.0187 4.1047 0.0574 39 1 1.9066 6.0383 -1.5341 40 1 0.3234 5.3186 -2.1489 41 1 -0.9252 6.4395 -0.2458 42 1 0.6573 7.1591 0.3697 43 1 4.5450 1.2677 -0.0012 44 1 2.5868 -3.0945 0.5174 45 1 0.8935 -2.5457 0.5228 46 1 0.8368 -5.5757 -3.0729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891789355.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:55:12 Heat of formation + Delta-G solvation = 53.119499 kcal Electronic energy + Delta-G solvation = -29085.827618 eV Core-core repulsion = 25172.133370 eV Total energy + Delta-G solvation = -3913.694248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30112 -40.38793 -39.10531 -36.99419 -36.08770 -33.96733 -32.33155 -31.81362 -31.28646 -31.05298 -28.01620 -26.94063 -24.93803 -24.44650 -23.19531 -22.41462 -21.73242 -21.13110 -19.90723 -19.45196 -18.51104 -17.26586 -16.92868 -16.48535 -15.84363 -15.79886 -15.47556 -15.25021 -14.92639 -14.72005 -14.68920 -14.34188 -13.96944 -13.65553 -13.49891 -13.36344 -12.67918 -12.65381 -12.56887 -12.49213 -12.34352 -12.09767 -11.90656 -11.72984 -11.65422 -11.60274 -11.47870 -11.19025 -10.90056 -10.64627 -10.42689 -10.28974 -10.19660 -9.83880 -9.70792 -8.91234 -8.89011 -8.70901 -8.68445 -7.98055 -6.36297 -4.41582 1.60890 2.13115 2.61819 2.73299 3.05576 3.11708 3.14146 3.24004 3.41539 3.75872 3.87339 4.11782 4.33805 4.49401 4.54629 4.71567 4.84845 4.86949 4.92299 4.99498 5.02725 5.06525 5.21489 5.30213 5.34407 5.36755 5.45616 5.49402 5.55952 5.61182 5.65454 5.67209 5.79092 5.82958 5.93404 6.15505 6.18306 6.25309 6.31033 6.40327 6.51036 6.59281 6.93706 7.14105 7.15204 7.38822 7.50004 8.15878 8.20502 8.38442 8.67908 9.17172 10.75864 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017570 B = 0.003204 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.244672 B = 8736.737714 C = 9574.985392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.157 3.843 3 C -0.325 4.325 4 C 0.611 3.389 5 O -0.522 6.522 6 N -0.613 5.613 7 C 0.104 3.896 8 C -0.185 4.185 9 C 0.363 3.637 10 O -0.458 6.458 11 C -0.177 4.177 12 C 0.189 3.811 13 H 0.074 0.926 14 C -0.132 4.132 15 C -0.160 4.160 16 C -0.199 4.199 17 C 0.052 3.948 18 N -0.289 5.289 19 N -0.311 5.311 20 C 0.225 3.775 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.082 3.918 24 N -0.882 5.882 25 Si 0.872 3.128 26 H -0.270 1.270 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.142 0.858 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.180 0.820 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.211 17.619 10.959 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.021 3.979 3 C -0.340 4.340 4 C 0.401 3.599 5 O -0.399 6.399 6 N -0.348 5.348 7 C -0.019 4.019 8 C -0.224 4.224 9 C 0.238 3.762 10 O -0.332 6.332 11 C -0.216 4.216 12 C 0.085 3.915 13 H 0.092 0.908 14 C -0.150 4.150 15 C -0.197 4.197 16 C -0.237 4.237 17 C -0.134 4.134 18 N -0.109 5.109 19 N -0.088 5.088 20 C 0.107 3.893 21 C -0.585 4.585 22 H 0.100 0.900 23 C -0.123 4.123 24 N -0.518 5.518 25 Si 0.698 3.302 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.188 1.188 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.159 0.841 39 H 0.103 0.897 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.197 0.803 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.628 16.775 10.841 19.983 hybrid contribution -0.477 -0.094 0.494 0.693 sum 0.151 16.681 11.335 20.168 Atomic orbital electron populations 1.20612 0.87129 1.05537 1.02840 1.21295 0.94656 0.86315 0.95619 1.19652 0.93395 0.92488 1.28514 1.17414 0.80334 0.83706 0.78422 1.90715 1.31479 1.78433 1.39277 1.47963 1.32991 1.10943 1.42866 1.22011 0.88091 1.04232 0.87577 1.22731 1.04031 0.96563 0.99078 1.24814 0.82499 0.88924 0.79916 1.90416 1.56353 1.54615 1.31801 1.22830 0.99068 1.04325 0.95381 1.20738 0.95298 0.82998 0.92426 0.90833 1.22729 0.99367 0.95289 0.97633 1.22807 1.01080 1.03155 0.92678 1.23149 1.00118 0.96386 1.04033 1.23747 0.96240 0.92393 1.00975 1.77162 0.98113 1.12234 1.23369 1.48869 1.02652 1.07472 1.49777 1.20141 0.95655 0.73335 1.00206 1.21102 1.48147 0.99202 0.90076 0.89963 1.24799 0.94306 0.97387 0.95853 1.69862 1.44931 1.18153 1.18826 0.86914 0.79469 0.81112 0.82721 1.19518 1.20353 1.18789 0.90763 0.88878 0.89300 0.86532 0.90794 0.87713 0.88180 0.87610 0.88364 0.84093 0.89685 0.88788 0.88932 0.89540 0.80275 0.92722 0.93503 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.59 9.70 36.01 0.35 -1.25 16 2 C 0.16 2.83 7.01 -81.60 -0.57 2.26 16 3 C -0.32 -5.22 5.33 -105.07 -0.56 -5.78 16 4 C 0.61 8.68 7.25 -12.52 -0.09 8.59 16 5 O -0.52 -8.43 11.39 5.27 0.06 -8.37 16 6 N -0.61 -6.63 2.90 -166.04 -0.48 -7.11 16 7 C 0.10 0.91 5.93 -3.64 -0.02 0.88 16 8 C -0.19 -1.49 6.34 -27.39 -0.17 -1.66 16 9 C 0.36 3.48 6.68 -28.45 -0.19 3.29 16 10 O -0.46 -5.83 17.89 6.00 0.11 -5.72 16 11 C -0.18 -1.49 5.55 -27.13 -0.15 -1.64 16 12 C 0.19 1.82 3.07 -67.27 -0.21 1.62 16 13 H 0.07 0.68 7.99 -51.93 -0.41 0.26 16 14 C -0.13 -1.42 3.21 -90.62 -0.29 -1.71 16 15 C -0.16 -1.74 9.74 -26.69 -0.26 -2.00 16 16 C -0.20 -1.80 10.12 -26.69 -0.27 -2.07 16 17 C 0.05 0.82 9.60 -16.98 -0.16 0.66 16 18 N -0.29 -5.67 12.50 30.86 0.39 -5.29 16 19 N -0.31 -6.38 3.56 -57.78 -0.21 -6.58 16 20 C 0.23 4.98 4.85 -5.20 -0.03 4.95 16 21 C -0.55 -14.56 9.94 -34.44 -0.34 -14.90 16 22 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 23 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 24 N -0.88 -25.39 13.96 55.43 0.77 -24.61 16 25 Si 0.87 19.17 27.47 -169.99 -4.67 14.50 16 26 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.41 6.93 -51.93 -0.36 1.05 16 31 H 0.09 1.50 7.71 -51.93 -0.40 1.10 16 32 H 0.12 1.09 3.87 -51.93 -0.20 0.89 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.14 1.83 5.90 -52.38 -0.31 1.52 16 39 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.18 2.08 7.14 -52.48 -0.37 1.71 16 44 H 0.05 1.22 7.20 -51.93 -0.37 0.84 16 45 H 0.05 0.94 7.06 -51.93 -0.37 0.58 16 46 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 371.73 15.07 5.60 5.60 Total: -1.00 -31.58 371.73 -8.11 -39.69 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.61 Total: 4.56 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.06 Total: -6.67 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.47 Total: -43.59 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.17 Total: -14.09 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.67 Total: 14.50 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.58 -8.11 -39.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891789355.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.810 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds