Wall clock time and date at job start Sat Apr 11 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 110.77960 * 2 1 4 4 C 1.54319 * 110.72323 * 123.23924 * 2 1 3 5 5 N 1.47027 * 107.27064 * 96.17128 * 4 2 1 6 6 C 1.36932 * 125.64827 * 178.97888 * 5 4 2 7 7 H 1.08005 * 119.99976 * 349.94033 * 6 5 4 8 8 C 1.38816 * 119.99894 * 169.93973 * 6 5 4 9 9 N 1.31614 * 119.99975 * 350.42072 * 8 6 5 10 10 Si 1.86802 * 119.99657 * 170.42264 * 8 6 5 11 11 H 1.48496 * 109.47006 * 94.14331 * 10 8 6 12 12 H 1.48500 * 109.46736 * 214.13984 * 10 8 6 13 13 H 1.48494 * 109.47475 * 334.13794 * 10 8 6 14 14 C 1.47426 * 108.70207 * 358.94034 * 5 4 2 15 15 C 1.54916 * 104.82976 * 24.13159 * 14 5 4 16 16 H 1.09004 * 110.99757 * 204.91593 * 15 14 5 17 17 N 1.46495 * 111.00382 * 81.10204 * 15 14 5 18 18 C 1.34778 * 120.00206 * 86.45157 * 17 15 14 19 19 O 1.21531 * 119.99520 * 0.02562 * 18 17 15 20 20 C 1.48030 * 120.00424 * 179.97438 * 18 17 15 21 21 C 1.39563 * 119.99307 * 359.72858 * 20 18 17 22 22 C 1.37821 * 119.99325 * 179.71640 * 21 20 18 23 23 C 1.39558 * 120.00191 * 0.55555 * 22 21 20 24 24 C 1.48033 * 120.00151 * 179.74190 * 23 22 21 25 25 N 1.34780 * 119.99954 * 359.97438 * 24 23 22 26 26 O 1.21525 * 120.00127 * 179.97438 * 24 23 22 27 27 C 1.39551 * 119.99946 * 359.72241 * 23 22 21 28 28 C 1.37827 * 120.00009 * 359.97438 * 27 23 22 29 29 H 1.08999 * 109.47010 * 298.21437 * 1 2 3 30 30 H 1.08995 * 109.47435 * 58.21012 * 1 2 3 31 31 H 1.09000 * 109.47371 * 178.21556 * 1 2 3 32 32 H 1.08998 * 109.47413 * 181.78544 * 3 2 1 33 33 H 1.08997 * 109.47680 * 301.78658 * 3 2 1 34 34 H 1.09006 * 109.47030 * 61.78532 * 3 2 1 35 35 H 1.09003 * 109.88233 * 336.75626 * 4 2 1 36 36 H 1.09001 * 109.88668 * 215.58904 * 4 2 1 37 37 H 0.96998 * 120.00188 * 180.02562 * 9 8 6 38 38 H 1.08993 * 110.36640 * 142.96759 * 14 5 4 39 39 H 1.08997 * 110.36318 * 265.29393 * 14 5 4 40 40 H 0.97001 * 119.99946 * 266.44623 * 17 15 14 41 41 H 1.07997 * 120.00303 * 359.97438 * 21 20 18 42 42 H 1.08000 * 119.99784 * 180.25039 * 22 21 20 43 43 H 0.96995 * 119.99771 * 0.02562 * 25 24 23 44 44 H 0.97001 * 119.99699 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.00280 * 179.97438 * 27 23 22 46 46 H 1.08000 * 120.00000 * 180.02562 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 2.3716 -2.1531 0.7389 6 6 2.8933 -3.1637 1.5016 7 1 3.2737 -2.9529 2.4902 8 6 2.9330 -4.4590 1.0042 9 7 2.3044 -4.7543 -0.1138 10 14 3.8788 -5.7831 1.9217 11 1 2.9547 -6.5168 2.8233 12 1 4.4753 -6.7310 0.9465 13 1 4.9583 -5.1543 2.7244 14 6 2.0126 -2.2509 -0.6876 15 6 2.0790 -0.7953 -1.2138 16 1 1.4395 -0.6661 -2.0871 17 7 3.4593 -0.4084 -1.5153 18 6 3.9878 -0.6842 -2.7241 19 8 3.3190 -1.2534 -3.5641 20 6 5.3825 -0.2927 -3.0291 21 6 6.1482 0.3670 -2.0667 22 6 7.4486 0.7262 -2.3485 23 6 7.9958 0.4407 -3.6002 24 6 9.3907 0.8316 -3.9048 25 7 10.1321 1.4639 -2.9736 26 8 9.8674 0.5826 -4.9946 27 6 7.2282 -0.2138 -4.5644 28 6 5.9298 -0.5787 -4.2805 29 1 -0.3633 0.4858 0.9056 30 1 -0.3634 0.5413 -0.8734 31 1 -0.3634 -1.0271 -0.0320 32 1 3.1620 1.4059 -0.0320 33 1 1.6956 1.9623 -0.8735 34 1 1.7474 1.9426 0.9056 35 1 1.3263 -0.8255 1.9977 36 1 2.9868 -0.3206 1.5775 37 1 2.3318 -5.6595 -0.4612 38 1 2.7292 -2.8786 -1.2170 39 1 1.0039 -2.6487 -0.7985 40 1 3.9930 0.0463 -0.8450 41 1 5.7232 0.5922 -1.0997 42 1 8.0426 1.2331 -1.6024 43 1 9.7518 1.6623 -2.1037 44 1 11.0462 1.7197 -3.1731 45 1 7.6515 -0.4344 -5.5332 46 1 5.3358 -1.0855 -5.0266 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977575613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:15 Heat of formation + Delta-G solvation = -21.782965 kcal Electronic energy + Delta-G solvation = -28649.841502 eV Core-core repulsion = 24732.899239 eV Total energy + Delta-G solvation = -3916.942263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55033 -39.76686 -38.50678 -37.39429 -34.18389 -33.93057 -33.23485 -31.36430 -31.06532 -30.74558 -28.19306 -26.92739 -25.67314 -25.06990 -23.37298 -22.69929 -21.55646 -20.51749 -19.81110 -19.05115 -18.45537 -17.48810 -16.99515 -16.69438 -15.99336 -15.30219 -15.09044 -15.06843 -14.81598 -14.49223 -14.30461 -13.97147 -13.78575 -13.73745 -13.72212 -13.24767 -12.81980 -12.59198 -12.48238 -12.14603 -11.97742 -11.81244 -11.40129 -11.32817 -11.31725 -10.92439 -10.80024 -10.45485 -10.40829 -10.24448 -10.07097 -10.04106 -9.93937 -9.74385 -9.61710 -9.25059 -9.19729 -8.60924 -8.48564 -6.80585 -5.74665 -3.08263 0.31974 1.13173 2.36997 3.14193 3.18735 3.38183 3.42703 3.43823 3.46299 3.85281 4.41874 4.47551 4.48488 4.66294 4.86972 4.93718 5.08628 5.17794 5.18351 5.22653 5.45386 5.48346 5.58561 5.70200 5.73294 5.81829 5.92623 5.96562 6.03188 6.06274 6.10844 6.17202 6.20963 6.35522 6.40927 6.47010 6.53979 6.56264 6.65290 6.67394 6.91884 6.95807 7.49169 7.53950 7.77252 7.87508 7.89855 8.25349 8.53056 9.17389 9.80157 10.46763 11.37518 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.003565 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.352747 B = 7851.984745 C = 9124.236040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.131 4.131 4 C 0.142 3.858 5 N -0.599 5.599 6 C -0.234 4.234 7 H 0.075 0.925 8 C -0.003 4.003 9 N -0.913 5.913 10 Si 0.907 3.093 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.169 3.831 15 C 0.122 3.878 16 H 0.089 0.911 17 N -0.695 5.695 18 C 0.551 3.449 19 O -0.533 6.533 20 C -0.092 4.092 21 C -0.094 4.094 22 C -0.093 4.093 23 C -0.126 4.126 24 C 0.565 3.435 25 N -0.851 5.851 26 O -0.539 6.539 27 C -0.066 4.066 28 C -0.070 4.070 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.025 0.975 36 H 0.021 0.979 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.396 0.604 41 H 0.134 0.866 42 H 0.131 0.869 43 H 0.402 0.598 44 H 0.405 0.595 45 H 0.142 0.858 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.182 16.736 -2.469 18.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.087 4.087 3 C -0.189 4.189 4 C 0.016 3.984 5 N -0.326 5.326 6 C -0.362 4.362 7 H 0.093 0.907 8 C -0.200 4.200 9 N -0.559 5.559 10 Si 0.738 3.262 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.043 3.957 15 C 0.017 3.983 16 H 0.106 0.894 17 N -0.346 5.346 18 C 0.336 3.664 19 O -0.410 6.410 20 C -0.096 4.096 21 C -0.113 4.113 22 C -0.112 4.112 23 C -0.130 4.130 24 C 0.351 3.649 25 N -0.415 5.415 26 O -0.416 6.416 27 C -0.085 4.085 28 C -0.089 4.089 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.232 0.768 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.232 0.768 44 H 0.236 0.764 45 H 0.160 0.840 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.855 15.852 -3.811 18.097 hybrid contribution 0.941 -0.431 1.405 1.745 sum 8.796 15.421 -2.406 17.915 Atomic orbital electron populations 1.21693 0.93338 1.02681 1.00961 1.21825 0.96206 0.94467 0.96184 1.21730 1.00161 0.95515 1.01513 1.21416 0.96383 0.86946 0.93616 1.44434 1.74672 1.06820 1.06645 1.18951 1.32543 0.86304 0.98391 0.90738 1.24812 1.00326 0.96958 0.97949 1.69937 1.44893 1.19130 1.21924 0.86188 0.79573 0.81856 0.78604 1.21612 1.21638 1.20687 1.21774 0.99905 0.89442 0.84585 1.22590 0.80909 0.98299 0.96513 0.89354 1.45789 1.15136 1.59451 1.14200 1.18161 0.86076 0.79500 0.82614 1.90776 1.61528 1.41347 1.47374 1.20357 0.94725 0.99277 0.95203 1.21279 0.93909 0.97157 0.98963 1.21156 0.95345 0.99194 0.95455 1.19994 0.94018 1.03223 0.95718 1.18345 0.85800 0.76833 0.83943 1.43757 1.17649 1.62334 1.17771 1.90815 1.72996 1.54651 1.23158 1.21258 0.92982 0.94892 0.99355 1.21326 0.94573 0.96905 0.96055 0.92587 0.93055 0.91565 0.93141 0.92695 0.92523 0.95721 0.96158 0.93612 0.90676 0.94608 0.76803 0.84868 0.85146 0.76820 0.76398 0.84019 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.44 37.15 0.31 -1.55 16 2 C -0.09 -1.33 0.81 -152.68 -0.12 -1.46 16 3 C -0.13 -1.56 8.16 37.16 0.30 -1.26 16 4 C 0.14 2.72 6.41 -3.06 -0.02 2.70 16 5 N -0.60 -14.51 3.39 -170.07 -0.58 -15.09 16 6 C -0.23 -6.33 10.24 -15.06 -0.15 -6.48 16 7 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 8 C 0.00 -0.09 5.40 -17.43 -0.09 -0.18 16 9 N -0.91 -26.88 10.68 55.49 0.59 -26.29 16 10 Si 0.91 21.98 29.56 -169.99 -5.03 16.95 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.17 4.02 4.80 -2.52 -0.01 4.01 16 15 C 0.12 2.23 2.56 -65.78 -0.17 2.06 16 16 H 0.09 1.64 7.63 -51.93 -0.40 1.25 16 17 N -0.70 -11.33 4.63 -52.61 -0.24 -11.57 16 18 C 0.55 9.52 7.78 -12.24 -0.10 9.43 16 19 O -0.53 -11.13 16.08 5.34 0.09 -11.04 16 20 C -0.09 -1.28 5.88 -104.90 -0.62 -1.90 16 21 C -0.09 -1.02 9.53 -39.24 -0.37 -1.40 16 22 C -0.09 -0.83 9.53 -39.24 -0.37 -1.21 16 23 C -0.13 -1.36 5.88 -104.90 -0.62 -1.97 16 24 C 0.56 6.07 8.05 -12.24 -0.10 5.97 16 25 N -0.85 -5.34 8.82 30.57 0.27 -5.07 16 26 O -0.54 -7.84 17.17 5.34 0.09 -7.75 16 27 C -0.07 -0.79 9.58 -39.24 -0.38 -1.16 16 28 C -0.07 -0.92 9.58 -39.24 -0.38 -1.30 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 1.11 7.44 -51.93 -0.39 0.72 16 32 H 0.05 0.55 6.21 -51.93 -0.32 0.23 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.02 0.49 7.84 -51.93 -0.41 0.08 16 36 H 0.02 0.37 7.82 -51.93 -0.41 -0.03 16 37 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 2.10 6.93 -51.93 -0.36 1.74 16 39 H 0.04 0.94 7.64 -51.93 -0.40 0.54 16 40 H 0.40 5.52 4.84 -40.82 -0.20 5.32 16 41 H 0.13 1.21 6.39 -52.49 -0.34 0.87 16 42 H 0.13 0.67 6.39 -52.49 -0.34 0.34 16 43 H 0.40 1.42 6.85 -40.82 -0.28 1.14 16 44 H 0.40 1.99 8.93 -40.82 -0.36 1.63 16 45 H 0.14 1.60 7.64 -52.49 -0.40 1.20 16 46 H 0.15 1.92 7.64 -52.49 -0.40 1.52 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -35.22 373.19 -8.29 -43.51 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.23 Total: 6.44 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: -2.88 Total: 4.29 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.04 Total: -58.02 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.18 Total: -18.79 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.22 -8.29 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977575613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.728 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds