Wall clock time and date at job start Sat Apr 11 2020 02:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34859 * 119.09983 * 2 1 4 4 C 1.41671 * 119.34166 * 180.02562 * 3 2 1 5 5 O 1.22088 * 121.06899 * 180.27205 * 4 3 2 6 6 C 1.47094 * 117.86339 * 359.97438 * 4 3 2 7 7 C 1.47291 * 120.88608 * 179.97438 * 6 4 3 8 8 O 1.21621 * 119.99383 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00052 * 179.97438 * 7 6 4 10 10 C 1.46505 * 119.99531 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46559 * 180.02562 * 10 9 7 12 12 H 1.08995 * 115.51973 * 29.58820 * 11 10 9 13 13 C 1.52999 * 117.44031 * 244.24007 * 11 10 9 14 14 H 1.08992 * 119.54200 * 4.12172 * 13 11 10 15 15 C 1.57693 * 116.10833 * 161.64579 * 13 11 10 16 16 N 1.48142 * 104.68063 * 87.30861 * 15 13 11 17 17 C 1.36937 * 127.84204 * 139.77112 * 16 15 13 18 18 H 1.07996 * 119.99894 * 341.44979 * 17 16 15 19 19 C 1.38811 * 119.99966 * 161.44622 * 17 16 15 20 20 N 1.31620 * 119.99831 * 352.24804 * 19 17 16 21 21 Si 1.86795 * 119.99969 * 172.24372 * 19 17 16 22 22 H 1.48506 * 109.47060 * 90.00409 * 21 19 17 23 23 H 1.48501 * 109.47306 * 209.99973 * 21 19 17 24 24 H 1.48499 * 109.47139 * 330.00134 * 21 19 17 25 25 C 1.48149 * 104.32076 * 319.77605 * 16 15 13 26 26 C 1.53008 * 117.43888 * 175.00111 * 11 10 9 27 27 H 1.09000 * 119.53563 * 355.88555 * 26 11 10 28 28 C 1.37989 * 118.23751 * 359.97438 * 6 4 3 29 29 N 1.34350 * 120.36973 * 0.02562 * 28 6 4 30 30 C 1.46499 * 118.80788 * 180.02562 * 29 28 6 31 31 H 1.08994 * 109.47599 * 263.85878 * 1 2 3 32 32 H 1.08997 * 109.47262 * 23.86415 * 1 2 3 33 33 H 1.09007 * 109.46951 * 143.85900 * 1 2 3 34 34 H 1.08000 * 120.33323 * 0.02562 * 3 2 1 35 35 H 0.96990 * 120.00065 * 0.02562 * 9 7 6 36 36 H 1.08993 * 109.47355 * 300.00366 * 10 9 7 37 37 H 1.09002 * 109.46963 * 60.00573 * 10 9 7 38 38 H 1.09002 * 110.92059 * 328.22228 * 15 13 11 39 39 H 1.09007 * 109.93177 * 205.89261 * 15 13 11 40 40 H 0.96999 * 119.99938 * 179.97438 * 20 19 17 41 41 H 1.09009 * 110.40569 * 280.79922 * 25 16 15 42 42 H 1.08994 * 110.40793 * 158.37135 * 25 16 15 43 43 H 1.07996 * 119.81837 * 180.02562 * 28 6 4 44 44 H 1.08997 * 109.47615 * 95.81909 * 30 29 28 45 45 H 1.09001 * 109.47166 * 215.82242 * 30 29 28 46 46 H 1.09006 * 109.46822 * 335.82152 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1784 0.0000 4 6 3.5795 1.1843 -0.0006 5 8 4.2052 2.2327 0.0044 6 6 4.2725 -0.1131 -0.0005 7 6 5.7437 -0.1846 -0.0016 8 8 6.4020 0.8380 -0.0021 9 7 6.3601 -1.3831 -0.0011 10 6 7.8235 -1.4541 -0.0028 11 6 8.2629 -2.9196 -0.0023 12 1 7.5779 -3.6154 -0.4867 13 6 9.0321 -3.4247 1.2200 14 1 9.1843 -2.7611 2.0711 15 6 9.0806 -4.9892 1.4116 16 7 10.2551 -5.4279 0.6225 17 6 11.1834 -6.3779 0.9552 18 1 11.2927 -6.6893 1.9835 19 6 11.9840 -6.9408 -0.0293 20 7 11.7506 -6.6774 -1.2976 21 14 13.3926 -8.0718 0.4459 22 1 12.9049 -9.4734 0.5015 23 1 14.4760 -7.9645 -0.5640 24 1 13.9168 -7.6769 1.7780 25 6 10.1974 -4.6054 -0.6084 26 6 9.7610 -3.2066 -0.1222 27 1 10.4562 -2.3803 -0.2709 28 6 3.5077 -1.2617 0.0006 29 7 2.1664 -1.1847 0.0011 30 6 1.3880 -2.4258 0.0028 31 1 -0.3634 -0.1099 1.0217 32 1 -0.3633 0.9398 -0.4157 33 1 -0.3633 -0.8300 -0.6061 34 1 1.6136 2.1083 0.0004 35 1 5.8350 -2.1986 -0.0003 36 1 8.2102 -0.9594 -0.8936 37 1 8.2123 -0.9575 0.8863 38 1 8.1717 -5.4562 1.0322 39 1 9.2193 -5.2304 2.4656 40 1 12.3103 -7.0704 -1.9855 41 1 9.4630 -5.0124 -1.3035 42 1 11.1796 -4.5551 -1.0783 43 1 3.9900 -2.2280 0.0010 44 1 1.1071 -2.6771 1.0255 45 1 0.4888 -2.2915 -0.5984 46 1 1.9891 -3.2322 -0.4175 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978319954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:16 Heat of formation + Delta-G solvation = 4.513749 kcal Electronic energy + Delta-G solvation = -27307.997081 eV Core-core repulsion = 23392.195129 eV Total energy + Delta-G solvation = -3915.801952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.21694 -40.70109 -39.97416 -38.86842 -36.29069 -35.11969 -34.29668 -33.61618 -32.60230 -29.72469 -28.75635 -28.27811 -27.65427 -26.49267 -25.12800 -23.11000 -22.51570 -21.98631 -21.23943 -20.83773 -19.17884 -18.77760 -18.59164 -17.25850 -17.00094 -16.98539 -16.82516 -16.55433 -16.16229 -15.89619 -15.55254 -15.22897 -14.90482 -14.77947 -14.56570 -14.37328 -14.17735 -14.09960 -13.83002 -13.80446 -13.34139 -13.31591 -13.15567 -12.86934 -12.70098 -12.65601 -12.50341 -12.31226 -11.95489 -11.87630 -11.76799 -11.28639 -10.93012 -10.70565 -10.59394 -10.49385 -10.29816 -10.05034 -9.04898 -8.86236 -7.92196 -5.29066 -0.20009 0.33792 1.46426 1.48033 1.48434 1.57491 1.89283 2.06913 2.47951 2.75059 2.80756 3.23558 3.27172 3.58929 3.62426 3.66860 3.72892 3.82533 3.88264 4.13883 4.24162 4.26233 4.28176 4.36004 4.44803 4.48761 4.58876 4.68034 4.73619 4.73915 4.76924 4.84754 4.88623 4.95459 5.04406 5.17287 5.21517 5.32209 5.35893 5.45927 5.47181 5.54962 5.66462 5.71775 5.80891 6.19444 6.61376 7.01909 7.10284 7.33356 7.69207 8.48642 9.22123 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.002056 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.686592 B =13617.970334 C =14440.016803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.187 3.813 3 C -0.305 4.305 4 C 0.381 3.619 5 O -0.570 6.570 6 C -0.353 4.353 7 C 0.568 3.432 8 O -0.582 6.582 9 N -0.710 5.710 10 C 0.164 3.836 11 C -0.106 4.106 12 H 0.120 0.880 13 C -0.158 4.158 14 H 0.124 0.876 15 C 0.152 3.848 16 N -0.621 5.621 17 C -0.241 4.241 18 H 0.079 0.921 19 C -0.062 4.062 20 N -0.946 5.946 21 Si 0.979 3.021 22 H -0.281 1.281 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.194 3.806 26 C -0.183 4.183 27 H 0.105 0.895 28 C 0.224 3.776 29 N -0.456 5.456 30 C 0.031 3.969 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.153 0.847 35 H 0.413 0.587 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.039 0.961 39 H 0.054 0.946 40 H 0.250 0.750 41 H 0.009 0.991 42 H 0.044 0.956 43 H 0.214 0.786 44 H 0.105 0.895 45 H 0.120 0.880 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.999 4.557 2.782 32.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 C -0.328 4.328 4 C 0.274 3.726 5 O -0.458 6.458 6 C -0.364 4.364 7 C 0.357 3.643 8 O -0.462 6.462 9 N -0.364 5.364 10 C 0.040 3.960 11 C -0.125 4.125 12 H 0.138 0.862 13 C -0.178 4.178 14 H 0.142 0.858 15 C 0.027 3.973 16 N -0.345 5.345 17 C -0.369 4.369 18 H 0.097 0.903 19 C -0.256 4.256 20 N -0.593 5.593 21 Si 0.806 3.194 22 H -0.208 1.208 23 H -0.221 1.221 24 H -0.195 1.195 25 C 0.068 3.932 26 C -0.204 4.204 27 H 0.123 0.877 28 C 0.089 3.911 29 N -0.138 5.138 30 C -0.108 4.108 31 H 0.129 0.871 32 H 0.116 0.884 33 H 0.131 0.869 34 H 0.171 0.829 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.230 0.770 44 H 0.124 0.876 45 H 0.138 0.862 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -31.178 5.442 2.715 31.765 hybrid contribution 1.437 -0.457 -0.132 1.513 sum -29.741 4.985 2.584 30.266 Atomic orbital electron populations 1.21405 0.84019 1.06811 1.06076 1.20826 0.97030 0.83950 0.90252 1.22148 0.94090 0.99453 1.17075 1.18978 0.90367 0.87915 0.75309 1.90772 1.71739 1.35683 1.47653 1.22139 0.93076 0.96332 1.24854 1.17975 0.87433 0.83130 0.75749 1.90818 1.67508 1.36332 1.51538 1.45638 1.07068 1.07813 1.75886 1.20628 0.79898 0.93952 1.01537 1.22395 0.93877 0.95381 1.00870 0.86224 1.24665 1.04495 0.96909 0.91710 0.85815 1.21879 0.89509 0.90386 0.95574 1.45435 1.27131 1.42467 1.19459 1.19336 1.11348 1.13207 0.93049 0.90316 1.25779 1.03307 1.01311 0.95194 1.70087 1.41141 1.48643 0.99446 0.85093 0.78446 0.78604 0.77233 1.20785 1.22131 1.19499 1.20745 0.98252 0.85904 0.88302 1.23882 0.94210 0.99244 1.03043 0.87732 1.22703 0.82903 0.99647 0.85895 1.43217 1.05067 1.08996 1.56557 1.23145 0.98610 0.82117 1.06888 0.87145 0.88446 0.86866 0.82902 0.74843 0.92138 0.92174 0.94320 0.92724 0.94139 0.97349 0.93722 0.76966 0.87635 0.86212 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.31 9.34 71.24 0.67 0.98 16 2 C 0.19 1.40 6.64 41.20 0.27 1.68 16 3 C -0.30 -5.77 9.57 22.34 0.21 -5.55 16 4 C 0.38 11.99 6.96 25.44 0.18 12.17 16 5 O -0.57 -25.46 16.41 13.54 0.22 -25.24 16 6 C -0.35 -8.71 6.05 -18.63 -0.11 -8.82 16 7 C 0.57 17.95 7.77 86.62 0.67 18.63 16 8 O -0.58 -26.05 15.57 15.04 0.23 -25.82 16 9 N -0.71 -16.35 5.51 -466.49 -2.57 -18.92 16 10 C 0.16 4.52 5.95 86.38 0.51 5.03 16 11 C -0.11 -2.98 5.34 -10.79 -0.06 -3.03 16 12 H 0.12 3.00 8.04 -2.39 -0.02 2.98 16 13 C -0.16 -5.14 7.03 -8.69 -0.06 -5.20 16 14 H 0.12 3.69 8.12 -2.39 -0.02 3.67 16 15 C 0.15 5.88 7.09 87.73 0.62 6.51 16 16 N -0.62 -31.44 3.37 -681.42 -2.30 -33.74 16 17 C -0.24 -13.34 10.34 84.03 0.87 -12.47 16 18 H 0.08 4.17 7.84 -2.91 -0.02 4.15 16 19 C -0.06 -3.49 5.40 84.86 0.46 -3.04 16 20 N -0.95 -56.45 10.98 21.65 0.24 -56.21 16 21 Si 0.98 45.16 29.56 68.60 2.03 47.19 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 C 0.19 9.36 5.64 86.53 0.49 9.84 16 26 C -0.18 -6.83 6.77 -9.88 -0.07 -6.90 16 27 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 28 C 0.22 2.14 9.80 84.25 0.83 2.96 16 29 N -0.46 -1.80 2.97 -532.77 -1.58 -3.38 16 30 C 0.03 -0.21 9.98 127.77 1.28 1.06 16 31 H 0.11 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.10 -0.18 7.97 -2.39 -0.02 -0.20 16 33 H 0.11 -0.91 6.01 -2.38 -0.01 -0.92 16 34 H 0.15 2.65 8.00 -2.91 -0.02 2.62 16 35 H 0.41 5.54 6.48 -92.72 -0.60 4.94 16 36 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.06 1.81 7.94 -2.39 -0.02 1.79 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 40 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 41 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 42 H 0.04 2.49 6.69 -2.39 -0.02 2.47 16 43 H 0.21 0.04 6.28 -2.91 -0.02 0.02 16 44 H 0.11 -0.98 8.14 -2.39 -0.02 -1.00 16 45 H 0.12 -1.29 5.93 -2.39 -0.01 -1.31 16 46 H 0.12 -1.18 7.86 -2.38 -0.02 -1.19 16 Total: -1.00 -101.24 377.85 3.44 -97.80 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 0.41 Total: 4.46 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.76 Total: 13.84 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -6.21 Total: -112.24 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: 0.46 Total: -51.06 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -101.24 3.44 -97.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978319954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.312 kcal (2) G-P(sol) polarization free energy of solvation -101.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds