Wall clock time and date at job start Sat Apr 11 2020 02:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35926 * 117.00202 * 2 1 4 4 C 1.38848 * 120.40503 * 359.97438 * 3 2 1 5 5 N 1.31874 * 121.00058 * 180.02562 * 4 3 2 6 6 C 1.31683 * 121.93996 * 359.69809 * 5 4 3 7 7 C 1.39524 * 120.69341 * 0.58955 * 6 5 4 8 8 C 1.47851 * 120.53503 * 179.69986 * 7 6 5 9 9 O 1.21548 * 119.99928 * 173.62208 * 8 7 6 10 10 N 1.34776 * 119.99752 * 353.63009 * 8 7 6 11 11 C 1.46501 * 119.99807 * 179.72499 * 10 8 7 12 12 C 1.52995 * 109.47278 * 180.26944 * 11 10 8 13 13 H 1.09005 * 115.51776 * 29.58840 * 12 11 10 14 14 C 1.52998 * 117.44758 * 244.23621 * 12 11 10 15 15 H 1.09005 * 119.53620 * 4.12600 * 14 12 11 16 16 C 1.57696 * 116.11269 * 161.63441 * 14 12 11 17 17 N 1.48154 * 104.67051 * 87.31321 * 16 14 12 18 18 C 1.36933 * 127.83475 * 139.77539 * 17 16 14 19 19 H 1.08003 * 120.00194 * 345.51369 * 18 17 16 20 20 C 1.38814 * 119.99688 * 165.52102 * 18 17 16 21 21 N 1.31622 * 120.00143 * 349.56238 * 20 18 17 22 22 Si 1.86804 * 119.99907 * 169.56178 * 20 18 17 23 23 H 1.48500 * 109.46797 * 89.99684 * 22 20 18 24 24 H 1.48498 * 109.47089 * 209.99979 * 22 20 18 25 25 H 1.48496 * 109.46956 * 330.00061 * 22 20 18 26 26 C 1.48144 * 104.32148 * 319.77717 * 17 16 14 27 27 C 1.52999 * 117.44354 * 174.99779 * 12 11 10 28 28 H 1.09000 * 119.54213 * 355.88421 * 27 12 11 29 29 C 1.38840 * 120.40372 * 179.97438 * 3 2 1 30 30 C 1.50700 * 120.88314 * 0.02562 * 29 3 2 31 31 H 1.08996 * 109.46799 * 299.99771 * 1 2 3 32 32 H 1.09000 * 109.47318 * 59.99233 * 1 2 3 33 33 H 1.09002 * 109.47354 * 179.97438 * 1 2 3 34 34 H 1.08000 * 119.50060 * 0.04160 * 4 3 2 35 35 H 1.08004 * 119.65636 * 180.28945 * 6 5 4 36 36 H 0.96996 * 119.99935 * 359.97438 * 10 8 7 37 37 H 1.09005 * 109.47256 * 300.27433 * 11 10 8 38 38 H 1.09001 * 109.47139 * 60.26973 * 11 10 8 39 39 H 1.08999 * 110.92058 * 328.23653 * 16 14 12 40 40 H 1.09000 * 109.93655 * 205.89386 * 16 14 12 41 41 H 0.96995 * 119.99734 * 180.02562 * 21 20 18 42 42 H 1.09010 * 110.40792 * 280.79868 * 26 17 16 43 43 H 1.09003 * 110.40647 * 158.37504 * 26 17 16 44 44 H 1.09001 * 109.47217 * 263.68904 * 30 29 3 45 45 H 1.08999 * 109.46944 * 23.68223 * 30 29 3 46 46 H 1.08996 * 109.47483 * 143.68507 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5620 -0.0010 6 6 3.1954 3.6890 0.0048 7 6 4.0200 2.5636 -0.0005 8 6 5.4912 2.7102 -0.0005 9 8 6.1997 1.7291 0.1118 10 7 6.0465 3.9319 -0.1250 11 6 7.5042 4.0779 -0.1190 12 6 7.8693 5.5563 -0.2674 13 1 7.1438 6.2620 0.1371 14 6 8.6283 5.9720 -1.5291 15 1 8.8250 5.2331 -2.3059 16 6 8.6004 7.5090 -1.8810 17 7 9.7408 8.0862 -1.1319 18 6 10.6244 9.0436 -1.5536 19 1 10.6844 9.2992 -2.6012 20 6 11.4431 9.6854 -0.6345 21 7 11.2334 9.5292 0.6555 22 14 12.8426 10.7709 -1.2285 23 1 12.3536 12.1636 -1.3919 24 1 13.9445 10.7466 -0.2334 25 1 13.3418 10.2655 -2.5325 26 6 9.7083 7.3927 0.1768 27 6 9.3493 5.9307 -0.1657 28 1 10.0833 5.1610 0.0731 29 6 3.4321 1.2935 0.0005 30 6 4.2810 0.0483 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 0.2198 2.3226 -0.0003 35 1 3.6367 4.6748 0.0089 36 1 5.4810 4.7149 -0.2149 37 1 7.9037 3.6976 0.8212 38 1 7.9293 3.5137 -0.9490 39 1 7.6643 7.9650 -1.5591 40 1 8.7408 7.6474 -2.9531 41 1 11.8053 9.9779 1.2976 42 1 8.9451 7.8307 0.8202 43 1 10.6854 7.4417 0.6573 44 1 4.5786 -0.1885 1.0220 45 1 3.7082 -0.7819 -0.4126 46 1 5.1700 0.2146 -0.6076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978378043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:20 Heat of formation + Delta-G solvation = 28.561886 kcal Electronic energy + Delta-G solvation = -27191.286254 eV Core-core repulsion = 23276.527108 eV Total energy + Delta-G solvation = -3914.759146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.38807 -39.79939 -38.73466 -38.20402 -35.26507 -33.94471 -33.45027 -31.44629 -30.62230 -28.37416 -28.09957 -27.21286 -26.94143 -25.09363 -23.91453 -22.63193 -21.11928 -21.04055 -19.99876 -19.30361 -18.54748 -17.81493 -16.89141 -16.75051 -16.68261 -16.45624 -15.85773 -15.47032 -14.86005 -14.62955 -14.41055 -14.24527 -13.90811 -13.56281 -13.35373 -13.16133 -13.05557 -12.95499 -12.76031 -12.66824 -12.52846 -12.17422 -11.93807 -11.86685 -11.26246 -11.10616 -10.82696 -10.65180 -10.39258 -10.28430 -10.14262 -9.87800 -9.75041 -9.68557 -9.42554 -9.16949 -8.99587 -8.88628 -8.64758 -6.89472 -5.81403 -3.14774 0.23178 0.81525 2.53238 2.60209 3.04442 3.37251 3.43100 3.43785 3.45167 3.92192 4.08004 4.13203 4.33880 4.36909 4.45338 4.55781 4.62462 4.74351 4.83865 4.88926 4.99819 5.22164 5.27131 5.36815 5.38633 5.43170 5.48264 5.55254 5.74936 5.76287 5.80755 5.85469 5.87594 5.92129 6.15514 6.21590 6.31123 6.52193 6.64168 6.67480 6.67979 6.88635 7.30383 7.34510 7.43083 7.51288 7.70457 7.99170 8.19071 9.09439 9.72572 10.49036 11.32913 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.034691 B = 0.001877 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.931251 B =14910.861731 C =15328.350756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.306 6.306 3 C 0.065 3.935 4 C 0.040 3.960 5 N -0.456 5.456 6 C 0.103 3.897 7 C -0.154 4.154 8 C 0.562 3.438 9 O -0.528 6.528 10 N -0.715 5.715 11 C 0.155 3.845 12 C -0.155 4.155 13 H 0.104 0.896 14 C -0.171 4.171 15 H 0.107 0.893 16 C 0.156 3.844 17 N -0.594 5.594 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.183 3.817 27 C -0.161 4.161 28 H 0.102 0.898 29 C -0.011 4.011 30 C -0.114 4.114 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.402 0.598 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.027 0.973 40 H 0.048 0.952 41 H 0.254 0.746 42 H 0.024 0.976 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.459 -18.551 -0.489 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.017 3.983 4 C -0.117 4.117 5 N -0.165 5.165 6 C -0.056 4.056 7 C -0.159 4.159 8 C 0.348 3.652 9 O -0.406 6.406 10 N -0.366 5.366 11 C 0.032 3.968 12 C -0.174 4.174 13 H 0.122 0.878 14 C -0.191 4.191 15 H 0.125 0.875 16 C 0.029 3.971 17 N -0.318 5.318 18 C -0.355 4.355 19 H 0.094 0.906 20 C -0.203 4.203 21 N -0.562 5.562 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.057 3.943 27 C -0.181 4.181 28 H 0.120 0.880 29 C -0.021 4.021 30 C -0.170 4.170 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.179 0.821 35 H 0.181 0.819 36 H 0.237 0.763 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.151 -18.505 -0.344 28.106 hybrid contribution 0.559 0.381 -0.237 0.717 sum -20.592 -18.125 -0.581 27.439 Atomic orbital electron populations 1.23163 0.77826 1.04605 1.01650 1.86101 1.21632 1.25469 1.88574 1.19767 0.92331 0.86103 1.00075 1.23096 1.00770 0.87068 1.00745 1.67545 1.11875 1.25950 1.11109 1.22894 0.88747 0.98186 0.95804 1.20742 0.94815 0.93823 1.06494 1.17881 0.86668 0.83543 0.77129 1.90749 1.63098 1.37371 1.49380 1.45961 1.08676 1.08339 1.73660 1.20939 0.78420 0.95116 1.02314 1.22555 0.96858 0.94498 1.03519 0.87844 1.24720 1.04542 0.99132 0.90730 0.87480 1.21718 0.91260 0.88145 0.95990 1.45154 1.29854 1.43869 1.12877 1.18985 1.12212 1.11863 0.92477 0.90558 1.24874 1.00734 0.99384 0.95308 1.69899 1.39810 1.46658 0.99785 0.86127 0.81793 0.80199 0.77677 1.21464 1.21528 1.20571 1.21096 1.01384 0.83675 0.88139 1.24177 0.91425 1.01540 1.00997 0.87982 1.19852 0.90804 0.95945 0.95450 1.20926 0.99528 0.92490 1.04046 0.92274 0.92285 0.87688 0.82060 0.81933 0.76265 0.90812 0.91142 0.95531 0.93322 0.93545 0.95853 0.89135 0.90116 0.91418 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.47 9.57 -19.51 -0.19 -2.66 16 3 C 0.06 0.61 6.68 -39.13 -0.26 0.35 16 4 C 0.04 0.35 10.21 -17.31 -0.18 0.18 16 5 N -0.46 -4.70 10.34 -12.80 -0.13 -4.84 16 6 C 0.10 1.01 10.69 -17.14 -0.18 0.82 16 7 C -0.15 -1.67 5.89 -104.84 -0.62 -2.29 16 8 C 0.56 6.91 7.72 -12.33 -0.10 6.81 16 9 O -0.53 -7.87 13.50 5.32 0.07 -7.79 16 10 N -0.71 -7.89 5.51 -61.25 -0.34 -8.23 16 11 C 0.15 1.97 5.95 -4.04 -0.02 1.95 16 12 C -0.16 -2.26 5.34 -90.62 -0.48 -2.74 16 13 H 0.10 1.49 8.04 -51.93 -0.42 1.07 16 14 C -0.17 -2.89 7.03 -87.39 -0.61 -3.51 16 15 H 0.11 1.67 8.12 -51.93 -0.42 1.25 16 16 C 0.16 3.16 7.10 -0.56 0.00 3.16 16 17 N -0.59 -14.99 3.38 -166.72 -0.56 -15.55 16 18 C -0.23 -6.28 10.35 -15.06 -0.16 -6.43 16 19 H 0.08 2.04 7.85 -52.48 -0.41 1.62 16 20 C -0.01 -0.17 5.39 -17.43 -0.09 -0.26 16 21 N -0.92 -26.56 10.86 55.49 0.60 -25.96 16 22 Si 0.91 21.78 29.57 -169.99 -5.03 16.75 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.18 4.29 5.72 -2.41 -0.01 4.28 16 27 C -0.16 -2.94 6.77 -89.22 -0.60 -3.54 16 28 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 29 C -0.01 -0.12 5.97 -103.76 -0.62 -0.74 16 30 C -0.11 -1.19 8.70 36.01 0.31 -0.88 16 31 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 32 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 33 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.16 0.92 6.30 -52.49 -0.33 0.59 16 35 H 0.16 1.20 6.47 -52.48 -0.34 0.86 16 36 H 0.40 3.55 6.51 -40.82 -0.27 3.28 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.93 7.94 -51.93 -0.41 0.52 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.02 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.09 2.40 6.48 -51.93 -0.34 2.06 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.62 7.44 -51.93 -0.39 0.24 16 46 H 0.10 1.17 5.95 -51.93 -0.31 0.86 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -32.84 375.12 -9.08 -41.92 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.52 Total: 2.48 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.64 Total: -1.78 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.43 Total: -54.58 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.11 Total: -10.45 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.84 -9.08 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978378043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.481 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds