Wall clock time and date at job start Sat Apr 11 2020 02:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35926 * 117.00202 * 2 1 4 4 C 1.38848 * 120.40503 * 359.97438 * 3 2 1 5 5 N 1.31874 * 121.00058 * 180.02562 * 4 3 2 6 6 C 1.31683 * 121.93996 * 359.69809 * 5 4 3 7 7 C 1.39524 * 120.69341 * 0.58955 * 6 5 4 8 8 C 1.47851 * 120.53503 * 179.69986 * 7 6 5 9 9 O 1.21548 * 119.99928 * 173.62208 * 8 7 6 10 10 N 1.34776 * 119.99752 * 353.63009 * 8 7 6 11 11 C 1.46501 * 119.99807 * 179.72499 * 10 8 7 12 12 C 1.52995 * 109.47278 * 180.26944 * 11 10 8 13 13 H 1.09005 * 115.51776 * 29.58840 * 12 11 10 14 14 C 1.52998 * 117.44758 * 244.23621 * 12 11 10 15 15 H 1.09005 * 119.53620 * 4.12600 * 14 12 11 16 16 C 1.57696 * 116.11269 * 161.63441 * 14 12 11 17 17 N 1.48154 * 104.67051 * 87.31321 * 16 14 12 18 18 C 1.36933 * 127.83475 * 139.77539 * 17 16 14 19 19 H 1.08003 * 120.00194 * 345.51369 * 18 17 16 20 20 C 1.38814 * 119.99688 * 165.52102 * 18 17 16 21 21 N 1.31622 * 120.00143 * 349.56238 * 20 18 17 22 22 Si 1.86804 * 119.99907 * 169.56178 * 20 18 17 23 23 H 1.48500 * 109.46797 * 89.99684 * 22 20 18 24 24 H 1.48498 * 109.47089 * 209.99979 * 22 20 18 25 25 H 1.48496 * 109.46956 * 330.00061 * 22 20 18 26 26 C 1.48144 * 104.32148 * 319.77717 * 17 16 14 27 27 C 1.52999 * 117.44354 * 174.99779 * 12 11 10 28 28 H 1.09000 * 119.54213 * 355.88421 * 27 12 11 29 29 C 1.38840 * 120.40372 * 179.97438 * 3 2 1 30 30 C 1.50700 * 120.88314 * 0.02562 * 29 3 2 31 31 H 1.08996 * 109.46799 * 299.99771 * 1 2 3 32 32 H 1.09000 * 109.47318 * 59.99233 * 1 2 3 33 33 H 1.09002 * 109.47354 * 179.97438 * 1 2 3 34 34 H 1.08000 * 119.50060 * 0.04160 * 4 3 2 35 35 H 1.08004 * 119.65636 * 180.28945 * 6 5 4 36 36 H 0.96996 * 119.99935 * 359.97438 * 10 8 7 37 37 H 1.09005 * 109.47256 * 300.27433 * 11 10 8 38 38 H 1.09001 * 109.47139 * 60.26973 * 11 10 8 39 39 H 1.08999 * 110.92058 * 328.23653 * 16 14 12 40 40 H 1.09000 * 109.93655 * 205.89386 * 16 14 12 41 41 H 0.96995 * 119.99734 * 180.02562 * 21 20 18 42 42 H 1.09010 * 110.40792 * 280.79868 * 26 17 16 43 43 H 1.09003 * 110.40647 * 158.37504 * 26 17 16 44 44 H 1.09001 * 109.47217 * 263.68904 * 30 29 3 45 45 H 1.08999 * 109.46944 * 23.68223 * 30 29 3 46 46 H 1.08996 * 109.47483 * 143.68507 * 30 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5620 -0.0010 6 6 3.1954 3.6890 0.0048 7 6 4.0200 2.5636 -0.0005 8 6 5.4912 2.7102 -0.0005 9 8 6.1997 1.7291 0.1118 10 7 6.0465 3.9319 -0.1250 11 6 7.5042 4.0779 -0.1190 12 6 7.8693 5.5563 -0.2674 13 1 7.1438 6.2620 0.1371 14 6 8.6283 5.9720 -1.5291 15 1 8.8250 5.2331 -2.3059 16 6 8.6004 7.5090 -1.8810 17 7 9.7408 8.0862 -1.1319 18 6 10.6244 9.0436 -1.5536 19 1 10.6844 9.2992 -2.6012 20 6 11.4431 9.6854 -0.6345 21 7 11.2334 9.5292 0.6555 22 14 12.8426 10.7709 -1.2285 23 1 12.3536 12.1636 -1.3919 24 1 13.9445 10.7466 -0.2334 25 1 13.3418 10.2655 -2.5325 26 6 9.7083 7.3927 0.1768 27 6 9.3493 5.9307 -0.1657 28 1 10.0833 5.1610 0.0731 29 6 3.4321 1.2935 0.0005 30 6 4.2810 0.0483 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 -0.0005 34 1 0.2198 2.3226 -0.0003 35 1 3.6367 4.6748 0.0089 36 1 5.4810 4.7149 -0.2149 37 1 7.9037 3.6976 0.8212 38 1 7.9293 3.5137 -0.9490 39 1 7.6643 7.9650 -1.5591 40 1 8.7408 7.6474 -2.9531 41 1 11.8053 9.9779 1.2976 42 1 8.9451 7.8307 0.8202 43 1 10.6854 7.4417 0.6573 44 1 4.5786 -0.1885 1.0220 45 1 3.7082 -0.7819 -0.4126 46 1 5.1700 0.2146 -0.6076 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978378043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:19 Heat of formation + Delta-G solvation = 7.086400 kcal Electronic energy + Delta-G solvation = -27192.217501 eV Core-core repulsion = 23276.527108 eV Total energy + Delta-G solvation = -3915.690393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11845 -40.75999 -40.07739 -38.92040 -36.48790 -35.13987 -34.67818 -32.87638 -31.81243 -29.31067 -28.75173 -28.53429 -28.34101 -26.66463 -24.77235 -23.43380 -22.72817 -22.03848 -21.26632 -20.83425 -19.34547 -18.79405 -18.52298 -17.62568 -17.37545 -17.03514 -16.88819 -16.67551 -16.35596 -15.95896 -15.35717 -15.17843 -15.06192 -14.82995 -14.59777 -14.39666 -14.13468 -13.95196 -13.81420 -13.73326 -13.36729 -13.17326 -13.10926 -12.86175 -12.72388 -12.68316 -12.36450 -12.30322 -11.94891 -11.87853 -11.73413 -11.27107 -10.93702 -10.73408 -10.63703 -10.62023 -10.39481 -10.02647 -9.53112 -8.90234 -7.91137 -5.26001 -0.52017 0.09322 1.46726 1.48353 1.57735 1.72463 1.83647 2.28924 2.48411 2.67625 2.77977 3.26447 3.27852 3.41772 3.57910 3.63001 3.68957 3.72801 3.88344 4.00180 4.10017 4.21951 4.29163 4.34671 4.36966 4.40939 4.55019 4.59005 4.63761 4.68855 4.73305 4.76391 4.78234 4.94526 5.04038 5.04819 5.11650 5.22570 5.35508 5.38909 5.45968 5.47339 5.55017 5.68797 6.13820 6.19061 6.43009 6.72657 7.02256 7.08778 7.69938 8.47802 9.22579 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.034691 B = 0.001877 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.931251 B =14910.861731 C =15328.350756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.066 3.934 4 C 0.045 3.955 5 N -0.472 5.472 6 C 0.103 3.897 7 C -0.163 4.163 8 C 0.564 3.436 9 O -0.558 6.558 10 N -0.706 5.706 11 C 0.164 3.836 12 C -0.114 4.114 13 H 0.111 0.889 14 C -0.158 4.158 15 H 0.130 0.870 16 C 0.148 3.852 17 N -0.621 5.621 18 C -0.240 4.240 19 H 0.080 0.920 20 C -0.063 4.063 21 N -0.947 5.947 22 Si 0.978 3.022 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.269 1.269 26 C 0.188 3.812 27 C -0.177 4.177 28 H 0.112 0.888 29 C -0.032 4.032 30 C -0.106 4.106 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.123 0.877 34 H 0.192 0.808 35 H 0.184 0.816 36 H 0.414 0.586 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.054 0.946 41 H 0.249 0.751 42 H 0.003 0.997 43 H 0.052 0.948 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.556 -19.488 -1.474 30.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.018 3.982 4 C -0.112 4.112 5 N -0.181 5.181 6 C -0.056 4.056 7 C -0.169 4.169 8 C 0.351 3.649 9 O -0.438 6.438 10 N -0.358 5.358 11 C 0.041 3.959 12 C -0.133 4.133 13 H 0.129 0.871 14 C -0.178 4.178 15 H 0.147 0.853 16 C 0.023 3.977 17 N -0.345 5.345 18 C -0.369 4.369 19 H 0.098 0.902 20 C -0.257 4.257 21 N -0.595 5.595 22 Si 0.806 3.194 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.194 1.194 26 C 0.062 3.938 27 C -0.197 4.197 28 H 0.130 0.870 29 C -0.041 4.041 30 C -0.162 4.162 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.141 0.859 34 H 0.209 0.791 35 H 0.201 0.799 36 H 0.252 0.748 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.021 0.979 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.294 -19.445 -1.355 30.373 hybrid contribution 1.053 0.617 0.060 1.222 sum -22.241 -18.827 -1.295 29.168 Atomic orbital electron populations 1.23506 0.75593 1.06326 1.02859 1.86094 1.23939 1.24880 1.88277 1.19776 0.91902 0.86941 0.99537 1.23570 1.02138 0.86355 0.99148 1.67621 1.12029 1.26700 1.11739 1.23180 0.88667 0.98662 0.95109 1.20634 0.93906 0.94427 1.07886 1.18077 0.87214 0.83230 0.76406 1.90742 1.63879 1.38368 1.50842 1.45794 1.08061 1.08673 1.73255 1.20735 0.79461 0.93272 1.02426 1.22443 0.94385 0.95849 1.00599 0.87108 1.24645 1.04693 0.97311 0.91104 0.85263 1.21888 0.89823 0.90143 0.95849 1.45470 1.31115 1.43997 1.13917 1.19370 1.12613 1.12094 0.92791 0.90184 1.25703 1.03237 1.01282 0.95484 1.70093 1.40717 1.47885 1.00777 0.85094 0.78564 0.78417 0.77312 1.21080 1.21983 1.19432 1.20831 0.98735 0.86831 0.87380 1.23855 0.94445 0.98589 1.02842 0.87022 1.20023 0.91820 0.95940 0.96310 1.20801 0.99003 0.93017 1.03405 0.91040 0.91001 0.85894 0.79123 0.79946 0.74798 0.90909 0.90921 0.94991 0.92764 0.94159 0.97923 0.92973 0.90669 0.90542 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.55 9.57 -92.72 -0.89 -5.44 16 3 C 0.07 1.13 6.68 22.56 0.15 1.29 16 4 C 0.04 0.67 10.21 84.83 0.87 1.54 16 5 N -0.47 -8.67 10.34 -194.40 -2.01 -10.68 16 6 C 0.10 1.80 10.69 85.03 0.91 2.71 16 7 C -0.16 -3.36 5.89 -20.01 -0.12 -3.48 16 8 C 0.56 13.17 7.72 86.79 0.67 13.84 16 9 O -0.56 -16.34 13.50 -3.87 -0.05 -16.39 16 10 N -0.71 -14.04 5.51 -465.97 -2.57 -16.61 16 11 C 0.16 3.80 5.95 86.38 0.51 4.32 16 12 C -0.11 -3.06 5.34 -10.80 -0.06 -3.12 16 13 H 0.11 2.91 8.04 -2.38 -0.02 2.89 16 14 C -0.16 -5.01 7.03 -8.70 -0.06 -5.07 16 15 H 0.13 3.61 8.12 -2.38 -0.02 3.59 16 16 C 0.15 5.88 7.10 87.72 0.62 6.50 16 17 N -0.62 -31.69 3.38 -681.38 -2.30 -34.00 16 18 C -0.24 -13.41 10.35 84.03 0.87 -12.54 16 19 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 20 C -0.06 -3.60 5.39 84.86 0.46 -3.14 16 21 N -0.95 -56.80 10.86 21.65 0.24 -56.56 16 22 Si 0.98 45.45 29.57 68.60 2.03 47.48 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 26 C 0.19 9.07 5.72 86.54 0.49 9.56 16 27 C -0.18 -6.34 6.77 -9.89 -0.07 -6.41 16 28 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 29 C -0.03 -0.66 5.97 -19.30 -0.12 -0.78 16 30 C -0.11 -2.20 8.70 71.24 0.62 -1.58 16 31 H 0.07 0.20 7.67 -2.39 -0.02 0.18 16 32 H 0.07 0.19 7.67 -2.39 -0.02 0.17 16 33 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.19 1.53 6.30 -2.91 -0.02 1.51 16 35 H 0.18 2.23 6.47 -2.91 -0.02 2.21 16 36 H 0.41 6.17 6.51 -92.71 -0.60 5.57 16 37 H 0.07 1.78 8.14 -2.38 -0.02 1.77 16 38 H 0.07 1.73 7.94 -2.39 -0.02 1.71 16 39 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 43 H 0.05 2.89 6.48 -2.39 -0.02 2.87 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.08 1.38 7.44 -2.39 -0.02 1.36 16 46 H 0.08 1.98 5.95 -2.39 -0.01 1.97 16 Total: -1.00 -72.87 375.12 1.72 -71.15 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.41 Total: 16.26 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 6.87 Total: 4.80 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -6.65 Total: -117.86 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.94 Total: -21.83 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -72.87 1.72 -71.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978378043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.238 kcal (2) G-P(sol) polarization free energy of solvation -72.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds