Wall clock time and date at job start Sat Apr 11 2020 02:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.47398 * 2 1 4 4 C 1.38017 * 119.51309 * 125.00054 * 3 2 1 5 5 C 1.39929 * 119.13166 * 179.97438 * 4 3 2 6 6 C 1.48168 * 120.89122 * 179.97438 * 5 4 3 7 7 O 1.21515 * 120.00193 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99929 * 179.97438 * 6 5 4 9 9 C 1.46498 * 119.99813 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.46995 * 180.02562 * 9 8 6 11 11 H 1.09004 * 115.49465 * 29.62565 * 10 9 8 12 12 C 1.52996 * 117.44727 * 244.24139 * 10 9 8 13 13 H 1.09003 * 119.54049 * 4.12257 * 12 10 9 14 14 C 1.54790 * 117.94164 * 160.75517 * 12 10 9 15 15 N 1.48150 * 104.41815 * 87.46648 * 14 12 10 16 16 C 1.36933 * 127.83528 * 140.36727 * 15 14 12 17 17 H 1.07998 * 120.00773 * 338.37365 * 16 15 14 18 18 C 1.38819 * 119.99655 * 158.37879 * 16 15 14 19 19 N 1.31615 * 120.00000 * 335.54352 * 18 16 15 20 20 Si 1.86803 * 120.00006 * 155.55040 * 18 16 15 21 21 H 1.48499 * 109.47195 * 89.99634 * 20 18 16 22 22 H 1.48507 * 109.46994 * 329.99965 * 20 18 16 23 23 H 1.48494 * 109.47086 * 210.00046 * 20 18 16 24 24 C 1.48141 * 104.32133 * 320.11100 * 15 14 12 25 25 C 1.53002 * 117.44392 * 175.00034 * 10 9 8 26 26 H 1.08999 * 120.26386 * 356.17596 * 25 10 9 27 27 C 1.39607 * 118.21667 * 0.25279 * 5 4 3 28 28 C 1.38852 * 118.94751 * 359.50668 * 27 5 4 29 29 O 1.35690 * 119.62198 * 180.24880 * 28 27 5 30 30 N 1.31878 * 119.51132 * 304.98102 * 3 2 1 31 31 H 1.08997 * 109.47369 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46742 * 299.99643 * 1 2 3 33 33 H 1.08999 * 109.47089 * 59.99684 * 1 2 3 34 34 H 1.09000 * 109.46742 * 240.00356 * 2 1 3 35 35 H 1.08999 * 109.47089 * 120.00316 * 2 1 3 36 36 H 1.07998 * 120.43303 * 0.02562 * 4 3 2 37 37 H 0.96997 * 120.00357 * 0.02562 * 8 6 5 38 38 H 1.09002 * 109.47094 * 60.01006 * 9 8 6 39 39 H 1.09000 * 109.47497 * 300.00407 * 9 8 6 40 40 H 1.08999 * 110.54193 * 328.72949 * 14 12 10 41 41 H 1.08999 * 110.46666 * 206.16921 * 14 12 10 42 42 H 0.97003 * 120.00000 * 354.38840 * 19 18 16 43 43 H 1.09001 * 110.40844 * 158.63097 * 24 15 14 44 44 H 1.09003 * 110.40914 * 280.93898 * 24 15 14 45 45 H 1.08003 * 120.52492 * 179.74375 * 27 5 4 46 46 H 0.96694 * 113.99987 * 270.25537 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9086 1.8321 0.9839 5 6 3.3705 3.1530 0.9759 6 6 4.3113 3.6361 2.0136 7 8 4.6925 2.8819 2.8868 8 7 4.7451 4.9119 1.9885 9 6 5.6749 5.3897 3.0148 10 6 6.0057 6.8613 2.7579 11 1 5.2209 7.4406 2.2714 12 6 7.4552 7.2084 2.4127 13 1 8.1856 6.4082 2.2933 14 6 7.7307 8.5640 1.7183 15 7 7.8898 9.5248 2.8347 16 6 8.7874 10.5540 2.9357 17 1 9.6921 10.5414 2.3461 18 6 8.5344 11.6136 3.7961 19 7 7.2969 11.9014 4.1396 20 14 9.9504 12.6312 4.4662 21 1 10.2225 13.7660 3.5479 22 1 11.1630 11.7808 4.5751 23 1 9.5914 13.1555 5.8083 24 6 6.8533 9.1235 3.8141 25 6 6.8739 7.5799 3.7927 26 1 7.1820 7.0661 4.7033 27 6 2.9164 4.0049 -0.0325 28 6 2.0387 3.5085 -0.9871 29 8 1.5927 4.3233 -1.9763 30 7 1.6287 2.2526 -0.9403 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.2341 1.1433 1.7494 37 1 4.4412 5.5139 1.2913 38 1 6.5906 4.7995 2.9786 39 1 5.2151 5.2872 3.9978 40 1 6.8881 8.8494 1.0885 41 1 8.6461 8.5113 1.1289 42 1 6.5569 11.4268 3.7295 43 1 7.1059 9.4932 4.8079 44 1 5.8760 9.4966 3.5077 45 1 3.2456 5.0328 -0.0718 46 1 0.7813 4.8010 -1.7565 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978490779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:25 Heat of formation + Delta-G solvation = 11.307838 kcal Electronic energy + Delta-G solvation = -26960.692760 eV Core-core repulsion = 23045.185422 eV Total energy + Delta-G solvation = -3915.507338 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.27561 -39.79833 -38.92471 -37.70268 -35.33054 -34.48798 -33.61962 -32.64217 -30.86148 -29.87762 -27.74464 -27.31940 -25.55980 -24.81926 -23.71546 -22.71500 -21.31320 -20.80853 -20.02015 -19.48583 -19.06396 -17.62765 -17.48421 -17.39856 -16.20518 -16.03406 -15.84740 -15.50201 -14.89055 -14.73479 -14.67640 -14.25860 -13.94615 -13.78108 -13.58691 -13.32466 -13.23953 -12.99465 -12.84298 -12.36914 -12.23450 -12.06917 -11.90660 -11.70529 -11.49564 -11.01197 -10.74230 -10.66802 -10.61378 -10.50177 -10.33815 -10.08984 -9.89407 -9.68570 -9.68162 -9.31480 -9.25574 -9.18765 -8.53125 -7.05060 -6.18979 -3.24916 0.22162 0.47458 2.44390 2.70280 3.02153 3.32210 3.46216 3.50916 3.66081 3.90024 3.92756 4.15560 4.44835 4.47343 4.51274 4.64726 4.69267 4.78573 4.86605 4.97551 5.06872 5.15378 5.23791 5.26833 5.29261 5.38014 5.46193 5.50498 5.56791 5.65845 5.68976 5.72126 5.78376 5.81493 5.91318 5.96074 6.08957 6.34196 6.44226 6.52781 6.70048 6.90860 6.93254 6.98913 7.14196 7.40655 7.69546 7.80773 8.39332 8.91314 9.72358 10.35131 11.16895 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.027730 B = 0.001906 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.485647 B =14689.377271 C =15276.277932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C 0.153 3.847 4 C -0.125 4.125 5 C -0.065 4.065 6 C 0.557 3.443 7 O -0.528 6.528 8 N -0.713 5.713 9 C 0.154 3.846 10 C -0.149 4.149 11 H 0.104 0.896 12 C -0.167 4.167 13 H 0.106 0.894 14 C 0.153 3.847 15 N -0.597 5.597 16 C -0.332 4.332 17 H 0.065 0.935 18 C -0.026 4.026 19 N -0.918 5.918 20 Si 1.071 2.929 21 H -0.293 1.293 22 H -0.292 1.292 23 H -0.285 1.285 24 C 0.164 3.836 25 C -0.157 4.157 26 H 0.108 0.892 27 C -0.162 4.162 28 C 0.315 3.685 29 O -0.478 6.478 30 N -0.486 5.486 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.403 0.597 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.023 0.977 41 H 0.052 0.948 42 H 0.268 0.732 43 H 0.068 0.932 44 H 0.026 0.974 45 H 0.147 0.853 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.895 -21.377 -8.029 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C 0.015 3.985 4 C -0.145 4.145 5 C -0.076 4.076 6 C 0.342 3.658 7 O -0.405 6.405 8 N -0.365 5.365 9 C 0.031 3.969 10 C -0.168 4.168 11 H 0.122 0.878 12 C -0.187 4.187 13 H 0.124 0.876 14 C 0.027 3.973 15 N -0.322 5.322 16 C -0.459 4.459 17 H 0.082 0.918 18 C -0.227 4.227 19 N -0.558 5.558 20 Si 0.900 3.100 21 H -0.221 1.221 22 H -0.218 1.218 23 H -0.211 1.211 24 C 0.038 3.962 25 C -0.178 4.178 26 H 0.126 0.874 27 C -0.184 4.184 28 C 0.136 3.864 29 O -0.285 6.285 30 N -0.206 5.206 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.170 0.830 37 H 0.238 0.762 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.164 0.836 46 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -13.144 -20.923 -7.290 25.762 hybrid contribution -0.336 -0.339 -0.742 0.882 sum -13.479 -21.262 -8.032 26.425 Atomic orbital electron populations 1.21683 0.93791 1.02039 1.02711 1.20563 0.97305 0.89591 1.03784 1.21024 0.92605 0.95932 0.88943 1.22148 0.96812 0.95524 1.00052 1.20294 0.97307 0.94621 0.95389 1.18076 0.80882 0.82246 0.84595 1.90798 1.57588 1.55256 1.36837 1.45946 1.47463 1.11530 1.31537 1.20953 0.92639 0.92595 0.90707 1.22526 0.95030 0.94091 1.05161 0.87802 1.24104 0.93969 1.00158 1.00429 0.87560 1.21229 0.98261 0.86976 0.90862 1.45305 1.39421 1.33542 1.13913 1.19754 0.98586 0.98719 1.28857 0.91754 1.25895 1.01600 0.95777 0.99447 1.70750 0.98473 1.40595 1.45992 0.83453 0.74302 0.75347 0.76866 1.22065 1.21826 1.21061 1.21137 0.92118 0.87475 0.95463 1.23961 1.02597 0.98178 0.93062 0.87387 1.22326 1.00385 1.01557 0.94092 1.18939 0.93255 0.87253 0.86922 1.84819 1.46898 1.58044 1.38784 1.66785 1.25616 1.04015 1.24157 0.92033 0.92782 0.91540 0.89503 0.89663 0.82976 0.76153 0.90888 0.90601 0.95909 0.92903 0.92101 0.91399 0.95647 0.83570 0.73875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.77 37.16 0.36 -0.47 16 2 C -0.07 -0.46 6.33 -27.88 -0.18 -0.63 16 3 C 0.15 1.34 6.17 -82.65 -0.51 0.83 16 4 C -0.12 -1.15 9.27 -39.03 -0.36 -1.51 16 5 C -0.07 -0.65 5.91 -104.67 -0.62 -1.27 16 6 C 0.56 6.60 7.80 -12.18 -0.09 6.50 16 7 O -0.53 -7.94 16.44 5.35 0.09 -7.85 16 8 N -0.71 -7.56 5.51 -61.15 -0.34 -7.90 16 9 C 0.15 1.88 5.95 -4.04 -0.02 1.86 16 10 C -0.15 -2.08 5.39 -90.62 -0.49 -2.57 16 11 H 0.10 1.42 8.04 -51.93 -0.42 1.00 16 12 C -0.17 -2.78 6.76 -89.01 -0.60 -3.38 16 13 H 0.11 1.64 8.12 -51.93 -0.42 1.22 16 14 C 0.15 3.12 7.06 -2.19 -0.02 3.10 16 15 N -0.60 -15.00 3.22 -168.61 -0.54 -15.54 16 16 C -0.33 -9.31 10.19 -15.06 -0.15 -9.46 16 17 H 0.06 1.80 7.94 -52.49 -0.42 1.38 16 18 C -0.03 -0.72 5.12 -17.43 -0.09 -0.81 16 19 N -0.92 -27.45 12.82 55.49 0.71 -26.74 16 20 Si 1.07 25.13 29.98 -169.99 -5.10 20.04 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.16 3.70 5.00 -2.41 -0.01 3.69 16 25 C -0.16 -2.76 6.85 -89.22 -0.61 -3.37 16 26 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 27 C -0.16 -1.38 9.55 -38.84 -0.37 -1.75 16 28 C 0.32 2.93 7.74 -17.17 -0.13 2.79 16 29 O -0.48 -3.78 13.56 -18.77 -0.25 -4.04 16 30 N -0.49 -4.84 9.87 -9.60 -0.09 -4.94 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.45 7.94 -51.93 -0.41 0.04 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.38 7.86 -51.93 -0.41 -0.02 16 36 H 0.15 1.29 7.62 -52.49 -0.40 0.89 16 37 H 0.40 3.39 6.54 -40.82 -0.27 3.12 16 38 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.27 8.01 6.42 -40.82 -0.26 7.75 16 43 H 0.07 1.70 7.47 -51.93 -0.39 1.32 16 44 H 0.03 0.59 7.66 -51.93 -0.40 0.19 16 45 H 0.15 0.94 6.53 -52.48 -0.34 0.60 16 46 H 0.40 1.17 9.06 45.56 0.41 1.59 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -34.87 383.71 -9.53 -44.40 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.89 Total: 3.25 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -3.90 Total: -6.46 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.26 Total: -55.12 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.17 Total: -11.89 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.10 Total: 20.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.87 -9.53 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978490779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.708 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds