Wall clock time and date at job start Sat Apr 11 2020 02:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30016 * 127.33699 * 2 1 4 4 O 1.20657 * 112.30379 * 180.30578 * 3 2 1 5 5 C 1.33497 * 113.15390 * 359.71638 * 4 3 2 6 6 C 1.50694 * 126.82506 * 180.02562 * 5 4 3 7 7 C 1.53000 * 117.50161 * 8.59676 * 6 5 4 8 8 C 1.53006 * 117.50084 * 299.97110 * 6 5 4 9 9 C 1.37355 * 106.34217 * 359.97438 * 5 4 3 10 10 C 1.47408 * 128.56265 * 179.97438 * 9 5 4 11 11 O 1.21606 * 119.99584 * 90.00478 * 10 9 5 12 12 N 1.34769 * 119.99868 * 270.00042 * 10 9 5 13 13 C 1.46498 * 120.00009 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47314 * 180.02562 * 13 12 10 15 15 H 1.08998 * 115.49201 * 29.61782 * 14 13 12 16 16 C 1.57114 * 118.26980 * 243.46015 * 14 13 12 17 17 H 1.09000 * 121.24576 * 3.77279 * 16 14 13 18 18 C 1.54391 * 118.19972 * 162.01281 * 16 14 13 19 19 N 1.48155 * 104.61624 * 86.20383 * 18 16 14 20 20 C 1.36932 * 127.84099 * 140.41487 * 19 18 16 21 21 H 1.07997 * 120.00056 * 195.61544 * 20 19 18 22 22 C 1.38817 * 119.99827 * 15.61600 * 20 19 18 23 23 N 1.31614 * 120.00197 * 9.10103 * 22 20 19 24 24 Si 1.86804 * 119.99863 * 189.11079 * 22 20 19 25 25 H 1.48494 * 109.47290 * 89.99921 * 24 22 20 26 26 H 1.48504 * 109.46759 * 210.00088 * 24 22 20 27 27 H 1.48499 * 109.46879 * 329.99182 * 24 22 20 28 28 C 1.48150 * 104.32123 * 320.41234 * 19 18 16 29 29 C 1.53000 * 117.44123 * 175.00170 * 14 13 12 30 30 H 1.09006 * 119.54017 * 355.87476 * 29 14 13 31 31 H 1.09000 * 109.47017 * 270.14021 * 1 2 3 32 32 H 1.09000 * 109.47483 * 30.14150 * 1 2 3 33 33 H 1.09002 * 109.47039 * 150.14753 * 1 2 3 34 34 H 1.09007 * 115.55078 * 154.30491 * 6 5 4 35 35 H 1.08991 * 117.49756 * 359.97438 * 7 6 5 36 36 H 1.09001 * 117.49864 * 145.02235 * 7 6 5 37 37 H 1.09001 * 117.49685 * 214.98212 * 8 6 5 38 38 H 1.08993 * 117.49452 * 359.97438 * 8 6 5 39 39 H 0.97001 * 120.00131 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.47544 * 59.99933 * 13 12 10 41 41 H 1.09003 * 109.46952 * 299.99711 * 13 12 10 42 42 H 1.08995 * 110.40805 * 327.42138 * 18 16 14 43 43 H 1.09001 * 110.50897 * 205.03264 * 18 16 14 44 44 H 0.96999 * 120.00326 * 179.97438 * 23 22 20 45 45 H 1.09003 * 110.40444 * 280.80193 * 28 19 18 46 46 H 1.08999 * 110.40302 * 158.37160 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0060 5 6 3.6494 -0.6008 -0.0050 6 6 4.9711 -1.3245 -0.0106 7 6 6.2363 -0.4866 0.1846 8 6 5.9104 -1.0709 -1.1915 9 6 2.3991 -1.1696 0.0034 10 6 2.0401 -2.5993 0.0073 11 8 1.8984 -3.1876 1.0621 12 7 1.8688 -3.2542 -1.1580 13 6 1.5113 -4.6749 -1.1541 14 6 1.3790 -5.1715 -2.5953 15 1 2.0051 -4.6607 -3.3268 16 6 -0.0270 -5.6760 -3.0823 17 1 -0.9031 -5.6186 -2.4364 18 6 -0.2805 -5.7744 -4.6021 19 7 0.2272 -7.1140 -4.9799 20 6 -0.3232 -8.0019 -5.8652 21 1 -0.0018 -9.0330 -5.8660 22 6 -1.2941 -7.5767 -6.7615 23 7 -1.5582 -6.2934 -6.8859 24 14 -2.2261 -8.8262 -7.7911 25 1 -3.4441 -9.2597 -7.0606 26 1 -2.6175 -8.2089 -9.0838 27 1 -1.3573 -10.0029 -8.0474 28 6 1.4653 -7.2749 -4.1825 29 6 1.1241 -6.6653 -2.8057 30 1 1.1121 -7.3349 -1.9456 31 1 -0.3633 0.0025 1.0277 32 1 -0.3634 0.8887 -0.5160 33 1 -0.3633 -0.8913 -0.5116 34 1 4.9600 -2.3270 0.4174 35 1 6.1126 0.5882 0.3166 36 1 7.0578 -0.9377 0.7412 37 1 6.5175 -1.9064 -1.5401 38 1 5.5721 -0.3809 -1.9644 39 1 1.9821 -2.7849 -1.9993 40 1 0.5627 -4.8096 -0.6345 41 1 2.2889 -5.2438 -0.6442 42 1 0.2704 -4.9963 -5.1305 43 1 -1.3463 -5.6973 -4.8173 44 1 -2.2364 -5.9962 -7.5125 45 1 2.2888 -6.7312 -4.6454 46 1 1.7162 -8.3306 -4.0791 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978506079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:28 Heat of formation + Delta-G solvation = 109.064591 kcal Electronic energy + Delta-G solvation = -27561.795055 eV Core-core repulsion = 23650.526768 eV Total energy + Delta-G solvation = -3911.268287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.15456 -39.77785 -38.58005 -37.81979 -35.05010 -34.83329 -33.32843 -32.05415 -30.80697 -29.08430 -27.73162 -27.15247 -25.41870 -24.21980 -23.79308 -22.87316 -21.22395 -21.00837 -20.14170 -19.67189 -19.22729 -18.11737 -18.00794 -16.91839 -16.80119 -16.26233 -16.13793 -15.16134 -14.92550 -14.69066 -14.26114 -14.00590 -13.65039 -13.62901 -13.53186 -13.35003 -13.05700 -12.83943 -12.69358 -12.41921 -12.05570 -11.86074 -11.77677 -11.55213 -11.30368 -11.13178 -10.91785 -10.87606 -10.77435 -10.42459 -10.31656 -10.16901 -10.15091 -9.77921 -9.50009 -9.47839 -9.21063 -9.00279 -8.65574 -6.90910 -5.83715 -3.18109 0.94587 1.63591 2.21016 2.45810 3.02905 3.33262 3.35663 3.41131 3.42838 3.74856 3.87873 4.01064 4.23735 4.38430 4.41450 4.42263 4.61163 4.81709 4.91252 5.05559 5.17171 5.20942 5.23088 5.25479 5.31051 5.34348 5.39090 5.43387 5.46994 5.53216 5.61353 5.70575 5.76266 5.78586 5.86106 5.90446 6.21242 6.22588 6.49769 6.60656 6.65735 6.87376 7.29169 7.32028 7.49117 7.67969 7.93569 7.96241 8.16939 9.07238 9.69950 10.46733 11.30555 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.002273 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.618912 B =12317.222722 C =12772.481403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.058 3.942 3 N -0.355 5.355 4 O 0.096 5.904 5 C 0.051 3.949 6 C -0.096 4.096 7 C -0.161 4.161 8 C -0.155 4.155 9 C -0.244 4.244 10 C 0.599 3.401 11 O -0.528 6.528 12 N -0.709 5.709 13 C 0.156 3.844 14 C -0.154 4.154 15 H 0.104 0.896 16 C -0.167 4.167 17 H 0.104 0.896 18 C 0.182 3.818 19 N -0.594 5.594 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.006 4.006 23 N -0.916 5.916 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.152 3.848 29 C -0.160 4.160 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.405 0.595 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.022 0.978 43 H 0.090 0.910 44 H 0.254 0.746 45 H 0.024 0.976 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.361 12.785 13.978 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 N -0.062 5.062 4 O 0.035 5.965 5 C -0.012 4.012 6 C -0.115 4.115 7 C -0.198 4.198 8 C -0.192 4.192 9 C -0.251 4.251 10 C 0.383 3.617 11 O -0.405 6.405 12 N -0.360 5.360 13 C 0.033 3.967 14 C -0.173 4.173 15 H 0.122 0.878 16 C -0.187 4.187 17 H 0.122 0.878 18 C 0.057 3.943 19 N -0.318 5.318 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.026 3.974 29 C -0.181 4.181 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.158 0.842 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.240 0.760 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.040 0.960 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.877 13.595 14.488 23.148 hybrid contribution -0.633 -1.166 -0.848 1.574 sum 11.245 12.429 13.641 21.610 Atomic orbital electron populations 1.20259 0.84915 1.04464 1.04046 1.24767 0.98658 0.86351 1.00602 1.73632 0.88982 1.23190 1.20365 1.84504 1.21609 1.22304 1.68090 1.23516 0.95462 0.83527 0.98722 1.20545 0.84116 0.99646 1.07242 1.23101 0.96689 1.00299 0.99744 1.23159 1.00537 1.03974 0.91574 1.21825 0.92523 0.95383 1.15408 1.16818 0.76998 0.83786 0.84093 1.90832 1.50500 1.68007 1.31145 1.46002 1.69886 1.11842 1.08251 1.20894 1.00888 0.79253 0.95685 1.23119 1.01136 0.97953 0.95130 0.87809 1.25021 0.89605 1.03148 1.00937 0.87758 1.21084 1.01224 0.86696 0.85330 1.45212 1.22208 1.16786 1.47576 1.19008 1.17628 0.89825 1.09119 0.90543 1.24899 1.00995 0.96125 0.98247 1.69889 1.35002 1.12442 1.38860 0.86108 0.79977 0.80181 0.79425 1.21473 1.21641 1.20523 1.21176 0.90203 0.97712 0.88315 1.23839 1.04186 0.89931 1.00117 0.87903 0.89520 0.89726 0.89521 0.84234 0.87593 0.87296 0.87043 0.87841 0.75984 0.91049 0.90936 0.95995 0.89187 0.93547 0.95796 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.49 36.00 0.38 -0.34 16 2 C 0.06 0.67 7.59 -79.77 -0.61 0.07 16 3 N -0.35 -4.31 12.01 34.78 0.42 -3.89 16 4 O 0.10 1.06 10.86 18.64 0.20 1.27 16 5 C 0.05 0.53 7.00 -34.63 -0.24 0.28 16 6 C -0.10 -0.74 6.15 -91.77 -0.56 -1.30 16 7 C -0.16 -0.91 10.18 -26.73 -0.27 -1.18 16 8 C -0.16 -0.90 10.24 -26.72 -0.27 -1.18 16 9 C -0.24 -2.86 6.24 -102.89 -0.64 -3.50 16 10 C 0.60 7.72 7.63 -12.53 -0.10 7.63 16 11 O -0.53 -8.61 17.11 5.27 0.09 -8.52 16 12 N -0.71 -8.05 5.55 -61.39 -0.34 -8.39 16 13 C 0.16 1.94 5.98 -4.04 -0.02 1.92 16 14 C -0.15 -2.20 5.54 -88.39 -0.49 -2.69 16 15 H 0.10 1.47 8.04 -51.93 -0.42 1.05 16 16 C -0.17 -3.00 7.00 -86.99 -0.61 -3.61 16 17 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 18 C 0.18 4.22 5.73 -2.40 -0.01 4.21 16 19 N -0.59 -14.87 3.38 -168.85 -0.57 -15.44 16 20 C -0.23 -6.24 10.35 -15.06 -0.16 -6.40 16 21 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 22 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 23 N -0.92 -26.36 10.86 55.49 0.60 -25.76 16 24 Si 0.91 21.64 29.56 -169.99 -5.03 16.62 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 28 C 0.15 3.07 7.03 -2.41 -0.02 3.06 16 29 C -0.16 -2.69 6.71 -89.22 -0.60 -3.28 16 30 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.14 1.08 8.14 -51.92 -0.42 0.65 16 35 H 0.11 0.59 8.02 -51.93 -0.42 0.18 16 36 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.41 3.99 8.39 -40.82 -0.34 3.65 16 40 H 0.07 0.95 8.00 -51.93 -0.42 0.53 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.36 6.51 -51.93 -0.34 2.02 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 390.88 15.07 5.89 5.89 Total: -1.00 -32.41 390.88 -10.03 -42.44 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.97 Total: 2.35 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -4.32 Total: -6.57 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.11 Total: -53.47 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.29 Total: -7.26 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.41 -10.03 -42.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978506079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.503 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds