Wall clock time and date at job start Sat Apr 11 2020 02:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32562 * 119.99908 * 2 1 4 4 C 1.47812 * 120.00104 * 188.43561 * 3 2 1 5 5 C 1.39553 * 120.14230 * 45.25645 * 4 3 2 6 6 C 1.37946 * 119.86033 * 179.97438 * 5 4 3 7 7 C 1.38368 * 120.14191 * 0.02562 * 6 5 4 8 8 C 1.38323 * 120.28283 * 359.72168 * 7 6 5 9 9 N 1.48006 * 119.92964 * 180.27643 * 8 7 6 10 10 O 1.21802 * 120.00069 * 180.27652 * 9 8 7 11 11 O 1.21800 * 119.99704 * 0.27836 * 9 8 7 12 12 C 1.37992 * 120.14172 * 0.55732 * 8 7 6 13 13 C 1.50701 * 119.99879 * 180.02562 * 2 1 3 14 14 N 1.46900 * 109.46825 * 277.13820 * 13 2 1 15 15 C 1.46897 * 111.00020 * 288.02264 * 14 13 2 16 16 C 1.53241 * 109.33640 * 172.74594 * 15 14 13 17 17 N 1.47080 * 108.52030 * 53.83658 * 16 15 14 18 18 C 1.36938 * 120.88068 * 128.83326 * 17 16 15 19 19 H 1.07992 * 120.00355 * 327.56221 * 18 17 16 20 20 C 1.38817 * 119.99989 * 147.56681 * 18 17 16 21 21 N 1.31613 * 120.00458 * 166.86032 * 20 18 17 22 22 Si 1.86804 * 119.99610 * 346.85767 * 20 18 17 23 23 H 1.48504 * 109.47084 * 86.73385 * 22 20 18 24 24 H 1.48504 * 109.47181 * 206.72824 * 22 20 18 25 25 H 1.48493 * 109.47371 * 326.73275 * 22 20 18 26 26 C 1.47078 * 118.23703 * 308.81069 * 17 16 15 27 27 C 1.46905 * 110.99525 * 163.72223 * 14 13 2 28 28 H 1.08995 * 109.46903 * 89.99754 * 1 2 3 29 29 H 1.09001 * 109.47172 * 209.99707 * 1 2 3 30 30 H 1.09005 * 109.46814 * 329.99735 * 1 2 3 31 31 H 1.08005 * 120.00473 * 8.43696 * 3 2 1 32 32 H 1.08003 * 120.07108 * 0.02562 * 5 4 3 33 33 H 1.08004 * 119.93365 * 180.02562 * 6 5 4 34 34 H 1.07996 * 119.85656 * 180.02562 * 7 6 5 35 35 H 1.08003 * 120.06925 * 179.71601 * 12 8 7 36 36 H 1.08999 * 109.46817 * 37.14181 * 13 2 1 37 37 H 1.09002 * 109.46689 * 157.13862 * 13 2 1 38 38 H 1.08998 * 109.49775 * 292.70736 * 15 14 13 39 39 H 1.08998 * 109.49177 * 52.79554 * 15 14 13 40 40 H 1.08997 * 109.63072 * 294.12058 * 16 15 14 41 41 H 1.09003 * 109.62648 * 173.53853 * 16 15 14 42 42 H 0.96998 * 120.00250 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.62693 * 291.47818 * 26 17 16 44 44 H 1.08995 * 109.78919 * 170.98914 * 26 17 16 45 45 H 1.08990 * 109.49524 * 307.21327 * 27 14 13 46 46 H 1.09003 * 109.48870 * 67.29908 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1480 0.0000 4 6 3.6360 1.1550 -0.1878 5 6 4.2182 0.3740 -1.1870 6 6 5.5870 0.3853 -1.3575 7 6 6.3826 1.1685 -0.5400 8 6 5.8113 1.9489 0.4489 9 7 6.6691 2.7883 1.3150 10 8 6.1678 3.4722 2.1894 11 8 7.8763 2.7953 1.1532 12 6 4.4438 1.9421 0.6335 13 6 2.2605 -1.3051 -0.0006 14 7 2.3563 -1.8158 1.3735 15 6 3.2960 -1.0143 2.1687 16 6 3.2319 -1.4619 3.6329 17 7 3.4530 -2.9149 3.6873 18 6 4.3900 -3.4522 4.5291 19 1 5.2907 -2.9014 4.7566 20 6 4.1822 -4.7048 5.0901 21 7 5.1750 -5.3335 5.6827 22 14 2.4931 -5.4981 5.0039 23 1 2.3619 -6.2456 3.7275 24 1 2.3270 -6.4340 6.1449 25 1 1.4479 -4.4455 5.0709 26 6 2.6408 -3.7756 2.8141 27 6 2.7280 -3.2370 1.3821 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6386 2.0784 0.1372 32 1 3.5983 -0.2375 -1.8261 33 1 6.0389 -0.2184 -2.1307 34 1 7.4537 1.1741 -0.6777 35 1 3.9993 2.5484 1.4089 36 1 1.7327 -2.0290 -0.6214 37 1 3.2623 -1.1461 -0.3998 38 1 4.3076 -1.1567 1.7888 39 1 3.0255 0.0392 2.0983 40 1 2.2513 -1.2250 4.0456 41 1 4.0064 -0.9520 4.2058 42 1 5.0297 -6.2087 6.0749 43 1 1.6033 -3.7611 3.1481 44 1 3.0212 -4.7966 2.8450 45 1 2.0458 -3.7953 0.7412 46 1 3.7477 -3.3484 1.0131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347327894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:05 Heat of formation + Delta-G solvation = 82.988501 kcal Electronic energy + Delta-G solvation = -29107.349259 eV Core-core repulsion = 25194.950228 eV Total energy + Delta-G solvation = -3912.399031 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.24793 -40.19616 -38.48692 -36.63325 -36.31110 -33.93132 -32.21930 -31.90518 -31.35416 -30.48064 -27.93364 -27.14930 -26.66276 -24.76051 -23.30874 -22.91883 -22.46925 -22.07223 -19.74622 -19.51280 -18.70920 -17.94024 -17.58389 -17.11009 -16.75479 -15.87651 -15.61106 -15.30842 -14.98110 -14.65347 -14.36799 -14.30807 -14.11701 -13.80757 -13.36307 -13.13987 -13.04431 -12.78806 -12.58823 -12.41168 -12.10876 -11.91434 -11.75754 -11.62764 -11.47880 -11.35051 -11.19089 -11.17068 -10.96305 -10.72046 -10.35991 -10.17184 -10.02927 -9.84785 -9.78587 -9.53818 -8.74870 -8.67775 -8.03005 -6.90961 -5.95889 -3.39885 -0.31611 0.48524 1.15515 1.29961 1.85044 3.05927 3.27651 3.45512 3.49365 4.04466 4.17576 4.20163 4.43138 4.50001 4.50940 4.63547 4.66055 4.73743 4.94842 5.01325 5.22801 5.30024 5.34628 5.37302 5.46107 5.48154 5.52486 5.61112 5.62556 5.65955 5.67787 5.85906 5.88595 5.92487 5.99676 6.00940 6.14755 6.22946 6.32219 6.32583 6.50288 6.52857 6.60179 6.82455 7.28677 7.35580 7.56212 7.97904 8.32772 8.91144 9.68625 10.09590 11.20305 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.004074 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.773635 B = 6871.766759 C = 8403.346239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 C -0.152 4.152 4 C -0.035 4.035 5 C -0.065 4.065 6 C -0.116 4.116 7 C -0.060 4.060 8 C -0.038 4.038 9 N 0.029 4.971 10 O -0.158 6.158 11 O -0.162 6.162 12 C -0.050 4.050 13 C 0.062 3.938 14 N -0.525 5.525 15 C 0.044 3.956 16 C 0.152 3.848 17 N -0.608 5.608 18 C -0.262 4.262 19 H 0.083 0.917 20 C 0.025 3.975 21 N -0.913 5.913 22 Si 0.894 3.106 23 H -0.287 1.287 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.127 3.873 27 C 0.045 3.955 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.130 0.870 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.030 0.970 41 H 0.063 0.937 42 H 0.263 0.737 43 H 0.033 0.967 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.546 12.968 -18.914 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C -0.171 4.171 4 C -0.036 4.036 5 C -0.083 4.083 6 C -0.135 4.135 7 C -0.079 4.079 8 C -0.121 4.121 9 N 0.549 4.451 10 O -0.375 6.375 11 O -0.378 6.378 12 C -0.070 4.070 13 C -0.065 4.065 14 N -0.250 5.250 15 C -0.085 4.085 16 C 0.026 3.974 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.100 0.900 20 C -0.174 4.174 21 N -0.556 5.556 22 Si 0.725 3.275 23 H -0.215 1.215 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.002 3.998 27 C -0.084 4.084 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.332 12.434 -18.978 23.843 hybrid contribution 0.218 -0.439 -0.076 0.496 sum -7.114 11.994 -19.054 23.612 Atomic orbital electron populations 1.20815 0.91024 1.03524 1.01882 1.22114 0.96271 0.93942 0.94046 1.21311 0.90249 0.98563 1.07006 1.18953 0.94159 0.95760 0.94695 1.21796 0.95198 0.95260 0.96001 1.21128 0.93286 0.99201 0.99864 1.21094 1.02267 0.92718 0.91850 1.21016 0.91099 1.01682 0.98297 1.43616 1.01475 0.99757 1.00270 1.94549 1.77575 1.39396 1.25943 1.94534 0.96842 1.70792 1.75626 1.21136 0.90161 0.97390 0.98263 1.21614 0.98681 0.94218 0.92014 1.61819 1.50480 1.03064 1.09594 1.22664 0.92819 0.96545 0.96449 1.21011 0.98954 0.85351 0.92090 1.44352 1.43515 1.00880 1.44504 1.18907 0.97436 1.02137 1.20529 0.89967 1.25407 0.97239 0.97736 0.97045 1.69769 1.30664 1.14631 1.40567 0.86839 0.86189 0.78683 0.75824 1.21501 1.23202 1.19468 1.21500 0.95136 0.95158 0.88043 1.22670 0.98404 0.87440 0.99914 0.91109 0.90623 0.91647 0.85271 0.83832 0.83524 0.83051 0.82861 0.90316 0.93084 0.95540 0.91510 0.95156 0.91819 0.92695 0.94880 0.90683 0.91607 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.04 36.01 0.36 -0.57 16 2 C -0.06 -0.60 5.00 -101.25 -0.51 -1.10 16 3 C -0.15 -1.35 8.37 -37.57 -0.31 -1.67 16 4 C -0.03 -0.33 4.05 -105.01 -0.43 -0.76 16 5 C -0.06 -0.54 7.31 -39.20 -0.29 -0.83 16 6 C -0.12 -0.94 10.03 -39.64 -0.40 -1.34 16 7 C -0.06 -0.60 9.55 -39.50 -0.38 -0.98 16 8 C -0.04 -0.46 6.84 -80.01 -0.55 -1.01 16 9 N 0.03 0.42 4.45 33.93 0.15 0.57 16 10 O -0.16 -2.41 18.44 -29.46 -0.54 -2.96 16 11 O -0.16 -2.44 18.44 -29.46 -0.54 -2.98 16 12 C -0.05 -0.55 8.98 -39.20 -0.35 -0.90 16 13 C 0.06 0.70 4.53 -4.98 -0.02 0.67 16 14 N -0.52 -8.05 4.57 -235.76 -1.08 -9.13 16 15 C 0.04 0.74 4.93 -3.70 -0.02 0.72 16 16 C 0.15 3.12 6.69 -3.60 -0.02 3.09 16 17 N -0.61 -14.66 2.77 -172.01 -0.48 -15.14 16 18 C -0.26 -7.43 10.08 -15.06 -0.15 -7.58 16 19 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 20 C 0.02 0.72 5.34 -17.43 -0.09 0.63 16 21 N -0.91 -28.27 13.97 55.49 0.78 -27.50 16 22 Si 0.89 22.59 24.24 -169.99 -4.12 18.47 16 23 H -0.29 -6.88 6.48 56.52 0.37 -6.51 16 24 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 25 H -0.27 -6.75 6.57 56.52 0.37 -6.38 16 26 C 0.13 2.76 4.31 -3.60 -0.02 2.74 16 27 C 0.04 0.77 5.60 -3.70 -0.02 0.75 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 30 H 0.06 0.48 8.05 -51.93 -0.42 0.07 16 31 H 0.13 0.96 8.03 -52.48 -0.42 0.54 16 32 H 0.14 0.94 6.87 -52.48 -0.36 0.58 16 33 H 0.15 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.15 1.33 7.60 -52.49 -0.40 0.93 16 35 H 0.15 1.59 7.60 -52.48 -0.40 1.19 16 36 H 0.08 0.79 7.84 -51.93 -0.41 0.39 16 37 H 0.05 0.56 3.83 -51.93 -0.20 0.36 16 38 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.99 5.60 -51.93 -0.29 0.70 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 1.32 7.95 -51.93 -0.41 0.91 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 43 H 0.03 0.73 6.76 -51.93 -0.35 0.38 16 44 H 0.08 1.76 4.77 -51.93 -0.25 1.51 16 45 H 0.07 0.96 7.92 -51.93 -0.41 0.55 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -32.88 366.65 -9.98 -42.86 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -6.48 Total: -1.60 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.19 Total: -8.13 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.63 Total: -51.19 kcal Atomic # 8 Polarization: -4.85 SS G_CDS: -1.09 Total: -5.94 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.12 Total: 18.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.88 -9.98 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347327894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.846 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds