Wall clock time and date at job start Sat Apr 11 2020 02:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32560 * 119.99769 * 2 1 4 4 C 1.47816 * 120.00283 * 7.09141 * 3 2 1 5 5 C 1.39554 * 120.13866 * 213.49293 * 4 3 2 6 6 C 1.37956 * 119.85521 * 179.78593 * 5 4 3 7 7 C 1.38369 * 120.13849 * 0.49186 * 6 5 4 8 8 C 1.38321 * 120.28675 * 359.73860 * 7 6 5 9 9 N 1.48008 * 119.92858 * 180.02562 * 8 7 6 10 10 O 1.21800 * 119.99954 * 180.02562 * 9 8 7 11 11 O 1.21798 * 120.00432 * 0.02562 * 9 8 7 12 12 C 1.38001 * 120.14469 * 0.02562 * 8 7 6 13 13 C 1.50694 * 119.99961 * 179.97438 * 2 1 3 14 14 N 1.46910 * 109.47261 * 275.00025 * 13 2 1 15 15 C 1.46902 * 110.99721 * 294.30661 * 14 13 2 16 16 C 1.53233 * 109.33908 * 172.74629 * 15 14 13 17 17 N 1.47076 * 108.52283 * 53.82721 * 16 15 14 18 18 C 1.36939 * 120.88250 * 128.83839 * 17 16 15 19 19 H 1.08000 * 119.99913 * 208.74776 * 18 17 16 20 20 C 1.38807 * 120.00133 * 28.75327 * 18 17 16 21 21 N 1.31626 * 120.00168 * 11.40032 * 20 18 17 22 22 Si 1.86802 * 120.00142 * 191.40642 * 20 18 17 23 23 H 1.48505 * 109.47068 * 89.99627 * 22 20 18 24 24 H 1.48501 * 109.47203 * 209.99684 * 22 20 18 25 25 H 1.48492 * 109.47237 * 329.99846 * 22 20 18 26 26 C 1.47084 * 118.23909 * 308.81382 * 17 16 15 27 27 C 1.46897 * 111.00007 * 170.00291 * 14 13 2 28 28 H 1.09000 * 109.47368 * 268.68819 * 1 2 3 29 29 H 1.09000 * 109.47427 * 28.68802 * 1 2 3 30 30 H 1.09007 * 109.46963 * 148.69016 * 1 2 3 31 31 H 1.08002 * 120.00012 * 187.09653 * 3 2 1 32 32 H 1.08001 * 120.07510 * 0.02562 * 5 4 3 33 33 H 1.07993 * 119.93448 * 180.21003 * 6 5 4 34 34 H 1.08004 * 119.85568 * 179.71989 * 7 6 5 35 35 H 1.07998 * 120.07216 * 179.97438 * 12 8 7 36 36 H 1.08996 * 109.47658 * 34.99738 * 13 2 1 37 37 H 1.09000 * 109.47546 * 155.00125 * 13 2 1 38 38 H 1.09004 * 109.49232 * 292.70171 * 15 14 13 39 39 H 1.08993 * 109.49604 * 52.78066 * 15 14 13 40 40 H 1.09004 * 109.62911 * 294.11772 * 16 15 14 41 41 H 1.09006 * 109.63039 * 173.53768 * 16 15 14 42 42 H 0.96999 * 119.99801 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.62930 * 291.47625 * 26 17 16 44 44 H 1.08999 * 109.78886 * 170.98835 * 26 17 16 45 45 H 1.09001 * 109.49167 * 307.21220 * 27 14 13 46 46 H 1.08994 * 109.49265 * 67.29639 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1480 0.0000 4 6 1.4392 2.4233 0.1580 5 6 1.8900 3.5740 -0.4901 6 6 1.2011 4.7601 -0.3421 7 6 0.0713 4.8125 0.4551 8 6 -0.3779 3.6765 1.1040 9 7 -1.5876 3.7415 1.9543 10 8 -1.9840 2.7421 2.5267 11 8 -2.1867 4.7942 2.0818 12 6 0.2994 2.4828 0.9603 13 6 2.2605 -1.3051 0.0006 14 7 2.4008 -1.7889 1.3806 15 6 3.2491 -0.8869 2.1710 16 6 3.2235 -1.3233 3.6396 17 7 3.5921 -2.7453 3.7110 18 6 4.5748 -3.1748 4.5626 19 1 5.1570 -4.0507 4.3173 20 6 4.8224 -2.4845 5.7411 21 7 3.9793 -1.5612 6.1527 22 14 6.3522 -2.8656 6.7430 23 1 7.4689 -1.9971 6.2911 24 1 6.0785 -2.6121 8.1804 25 1 6.7256 -4.2903 6.5540 26 6 2.8770 -3.6940 2.8438 27 6 2.9163 -3.1642 1.4064 28 1 -0.3634 -0.0235 1.0274 29 1 -0.3634 0.9015 -0.4933 30 1 -0.3633 -0.8781 -0.5341 31 1 3.2436 1.1517 -0.1156 32 1 2.7740 3.5353 -1.1093 33 1 1.5468 5.6506 -0.8458 34 1 -0.4619 5.7445 0.5714 35 1 -0.0521 1.5967 1.4678 36 1 1.7132 -2.0409 -0.5884 37 1 3.2488 -1.1543 -0.4338 38 1 4.2720 -0.9287 1.7969 39 1 2.8725 0.1325 2.0878 40 1 2.2215 -1.1840 4.0456 41 1 3.9385 -0.7306 4.2103 42 1 4.1526 -1.0786 6.9760 43 1 1.8418 -3.7825 3.1733 44 1 3.3600 -4.6702 2.8876 45 1 2.2983 -3.7963 0.7687 46 1 3.9438 -3.1743 1.0430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347327905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:08 Heat of formation + Delta-G solvation = 76.199428 kcal Electronic energy + Delta-G solvation = -28347.092002 eV Core-core repulsion = 24434.398575 eV Total energy + Delta-G solvation = -3912.693427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.25735 -39.97689 -38.40559 -36.65162 -36.12250 -34.01762 -32.38095 -31.62829 -30.57162 -29.94319 -27.90465 -27.20945 -26.57170 -24.76378 -23.08123 -22.58902 -22.51463 -21.78982 -19.53885 -19.10802 -18.75171 -17.99031 -17.59300 -16.83800 -16.80307 -15.80066 -15.41630 -15.24439 -14.75157 -14.65273 -14.41353 -14.05330 -13.63535 -13.41958 -13.24791 -13.18210 -12.90787 -12.61924 -12.54981 -12.19826 -11.89632 -11.64908 -11.59386 -11.43175 -11.25880 -11.19580 -11.15808 -10.94818 -10.79527 -10.46853 -10.35452 -10.22036 -10.04282 -9.80779 -9.75529 -9.64223 -8.56536 -8.51210 -7.86901 -6.64119 -5.77619 -3.23525 -0.32017 0.46491 1.15510 1.29247 2.00977 3.12844 3.36316 3.42933 3.44596 4.08694 4.16250 4.37865 4.47146 4.50467 4.55496 4.63546 4.73608 4.89617 4.98923 5.25238 5.38296 5.40416 5.42158 5.50608 5.53814 5.58999 5.63101 5.65372 5.83290 5.86785 5.89707 5.93548 5.97734 6.11073 6.21131 6.30140 6.32383 6.36316 6.52286 6.60352 6.69358 6.92030 7.24579 7.53020 7.55477 7.64161 7.70944 7.80448 8.44964 9.21772 9.83574 10.42673 11.30531 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.002994 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.052047 B = 9349.263592 C =10142.617716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.061 4.061 3 C -0.153 4.153 4 C -0.032 4.032 5 C -0.064 4.064 6 C -0.118 4.118 7 C -0.065 4.065 8 C -0.042 4.042 9 N 0.028 4.972 10 O -0.153 6.153 11 O -0.167 6.167 12 C -0.055 4.055 13 C 0.084 3.916 14 N -0.525 5.525 15 C 0.032 3.968 16 C 0.179 3.821 17 N -0.596 5.596 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.905 5.905 22 Si 0.904 3.096 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.149 3.851 27 C 0.046 3.954 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.128 0.872 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.165 0.835 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.022 0.978 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.090 0.910 42 H 0.254 0.746 43 H 0.026 0.974 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 10.440 -18.063 21.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.061 4.061 3 C -0.172 4.172 4 C -0.033 4.033 5 C -0.083 4.083 6 C -0.136 4.136 7 C -0.084 4.084 8 C -0.125 4.125 9 N 0.548 4.452 10 O -0.370 6.370 11 O -0.381 6.381 12 C -0.074 4.074 13 C -0.044 4.044 14 N -0.250 5.250 15 C -0.097 4.097 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.382 4.382 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.735 3.265 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.022 3.978 27 C -0.084 4.084 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.182 0.818 36 H 0.096 0.904 37 H 0.054 0.946 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.299 10.478 -18.076 21.554 hybrid contribution 1.328 -0.026 0.435 1.398 sum -3.971 10.451 -17.641 20.885 Atomic orbital electron populations 1.21185 0.92011 1.02157 1.02916 1.22136 0.95999 0.94341 0.93657 1.21327 0.99090 0.89682 1.07133 1.18958 0.93659 0.94748 0.95951 1.21772 0.98928 0.91586 0.95969 1.21113 0.94579 0.98966 0.98977 1.21078 0.96118 0.97343 0.93906 1.21045 0.91253 0.97783 1.02427 1.43645 1.01622 1.00333 0.99647 1.94589 1.70169 1.25994 1.46286 1.94514 1.56983 1.18903 1.67719 1.21661 0.93205 0.97053 0.95453 1.21139 0.97607 0.93577 0.92076 1.61967 1.51536 1.02800 1.08728 1.23003 0.93130 0.95406 0.98197 1.20884 0.99576 0.85444 0.88796 1.44099 1.40940 1.01852 1.45011 1.19201 1.08827 1.12157 0.98042 0.91729 1.25112 0.98421 0.99744 0.96305 1.69977 1.35089 1.26986 1.22902 0.86257 0.82783 0.78033 0.79475 1.21533 1.21629 1.20459 1.20973 0.95799 0.92955 0.88073 1.22644 0.96855 0.88656 1.00199 0.89771 0.92048 0.91221 0.85440 0.83965 0.83645 0.83204 0.81811 0.90416 0.94599 0.95929 0.91832 0.95627 0.89157 0.93565 0.95613 0.92602 0.91974 0.95431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 8.19 36.01 0.29 -1.05 16 2 C -0.06 -0.70 4.90 -101.26 -0.50 -1.19 16 3 C -0.15 -1.63 7.84 -37.57 -0.29 -1.93 16 4 C -0.03 -0.32 5.21 -105.01 -0.55 -0.87 16 5 C -0.06 -0.49 9.79 -39.19 -0.38 -0.87 16 6 C -0.12 -0.80 10.03 -39.64 -0.40 -1.20 16 7 C -0.07 -0.58 9.55 -39.50 -0.38 -0.96 16 8 C -0.04 -0.50 6.84 -80.01 -0.55 -1.04 16 9 N 0.03 0.40 4.45 33.93 0.15 0.55 16 10 O -0.15 -2.38 18.44 -29.46 -0.54 -2.92 16 11 O -0.17 -2.38 18.44 -29.46 -0.54 -2.92 16 12 C -0.06 -0.63 7.13 -39.19 -0.28 -0.91 16 13 C 0.08 1.07 5.15 -4.97 -0.03 1.05 16 14 N -0.53 -8.82 4.62 -235.77 -1.09 -9.91 16 15 C 0.03 0.60 5.38 -3.70 -0.02 0.58 16 16 C 0.18 4.32 5.38 -3.61 -0.02 4.30 16 17 N -0.60 -15.04 3.04 -172.01 -0.52 -15.57 16 18 C -0.25 -6.94 9.64 -15.06 -0.15 -7.09 16 19 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 20 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 21 N -0.90 -26.37 10.97 55.49 0.61 -25.76 16 22 Si 0.90 21.70 29.57 -169.99 -5.03 16.67 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.15 3.12 6.69 -3.60 -0.02 3.10 16 27 C 0.05 0.79 5.62 -3.70 -0.02 0.76 16 28 H 0.08 1.00 6.73 -51.93 -0.35 0.65 16 29 H 0.06 0.60 6.12 -51.93 -0.32 0.28 16 30 H 0.07 0.67 8.10 -51.92 -0.42 0.25 16 31 H 0.13 1.29 7.99 -52.49 -0.42 0.87 16 32 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.15 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.15 1.11 7.60 -52.48 -0.40 0.71 16 35 H 0.16 2.04 4.80 -52.49 -0.25 1.79 16 36 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 37 H 0.04 0.45 7.97 -51.93 -0.41 0.04 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.11 5.99 -51.93 -0.31 0.80 16 40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 2.43 6.10 -51.93 -0.32 2.12 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 45 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -31.35 373.37 -11.23 -42.58 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.52 Total: -1.01 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -3.37 Total: -7.34 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: -0.85 Total: -50.69 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -1.09 Total: -5.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.35 -11.23 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347327905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.782 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds