Wall clock time and date at job start Sat Apr 11 2020 02:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32560 * 119.99769 * 2 1 4 4 C 1.47816 * 120.00283 * 7.09141 * 3 2 1 5 5 C 1.39554 * 120.13866 * 213.49293 * 4 3 2 6 6 C 1.37956 * 119.85521 * 179.78593 * 5 4 3 7 7 C 1.38369 * 120.13849 * 0.49186 * 6 5 4 8 8 C 1.38321 * 120.28675 * 359.73860 * 7 6 5 9 9 N 1.48008 * 119.92858 * 180.02562 * 8 7 6 10 10 O 1.21800 * 119.99954 * 180.02562 * 9 8 7 11 11 O 1.21798 * 120.00432 * 0.02562 * 9 8 7 12 12 C 1.38001 * 120.14469 * 0.02562 * 8 7 6 13 13 C 1.50694 * 119.99961 * 179.97438 * 2 1 3 14 14 N 1.46910 * 109.47261 * 275.00025 * 13 2 1 15 15 C 1.46902 * 110.99721 * 294.30661 * 14 13 2 16 16 C 1.53233 * 109.33908 * 172.74629 * 15 14 13 17 17 N 1.47076 * 108.52283 * 53.82721 * 16 15 14 18 18 C 1.36939 * 120.88250 * 128.83839 * 17 16 15 19 19 H 1.08000 * 119.99913 * 208.74776 * 18 17 16 20 20 C 1.38807 * 120.00133 * 28.75327 * 18 17 16 21 21 N 1.31626 * 120.00168 * 11.40032 * 20 18 17 22 22 Si 1.86802 * 120.00142 * 191.40642 * 20 18 17 23 23 H 1.48505 * 109.47068 * 89.99627 * 22 20 18 24 24 H 1.48501 * 109.47203 * 209.99684 * 22 20 18 25 25 H 1.48492 * 109.47237 * 329.99846 * 22 20 18 26 26 C 1.47084 * 118.23909 * 308.81382 * 17 16 15 27 27 C 1.46897 * 111.00007 * 170.00291 * 14 13 2 28 28 H 1.09000 * 109.47368 * 268.68819 * 1 2 3 29 29 H 1.09000 * 109.47427 * 28.68802 * 1 2 3 30 30 H 1.09007 * 109.46963 * 148.69016 * 1 2 3 31 31 H 1.08002 * 120.00012 * 187.09653 * 3 2 1 32 32 H 1.08001 * 120.07510 * 0.02562 * 5 4 3 33 33 H 1.07993 * 119.93448 * 180.21003 * 6 5 4 34 34 H 1.08004 * 119.85568 * 179.71989 * 7 6 5 35 35 H 1.07998 * 120.07216 * 179.97438 * 12 8 7 36 36 H 1.08996 * 109.47658 * 34.99738 * 13 2 1 37 37 H 1.09000 * 109.47546 * 155.00125 * 13 2 1 38 38 H 1.09004 * 109.49232 * 292.70171 * 15 14 13 39 39 H 1.08993 * 109.49604 * 52.78066 * 15 14 13 40 40 H 1.09004 * 109.62911 * 294.11772 * 16 15 14 41 41 H 1.09006 * 109.63039 * 173.53768 * 16 15 14 42 42 H 0.96999 * 119.99801 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.62930 * 291.47625 * 26 17 16 44 44 H 1.08999 * 109.78886 * 170.98835 * 26 17 16 45 45 H 1.09001 * 109.49167 * 307.21220 * 27 14 13 46 46 H 1.08994 * 109.49265 * 67.29639 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1698 1.1480 0.0000 4 6 1.4392 2.4233 0.1580 5 6 1.8900 3.5740 -0.4901 6 6 1.2011 4.7601 -0.3421 7 6 0.0713 4.8125 0.4551 8 6 -0.3779 3.6765 1.1040 9 7 -1.5876 3.7415 1.9543 10 8 -1.9840 2.7421 2.5267 11 8 -2.1867 4.7942 2.0818 12 6 0.2994 2.4828 0.9603 13 6 2.2605 -1.3051 0.0006 14 7 2.4008 -1.7889 1.3806 15 6 3.2491 -0.8869 2.1710 16 6 3.2235 -1.3233 3.6396 17 7 3.5921 -2.7453 3.7110 18 6 4.5748 -3.1748 4.5626 19 1 5.1570 -4.0507 4.3173 20 6 4.8224 -2.4845 5.7411 21 7 3.9793 -1.5612 6.1527 22 14 6.3522 -2.8656 6.7430 23 1 7.4689 -1.9971 6.2911 24 1 6.0785 -2.6121 8.1804 25 1 6.7256 -4.2903 6.5540 26 6 2.8770 -3.6940 2.8438 27 6 2.9163 -3.1642 1.4064 28 1 -0.3634 -0.0235 1.0274 29 1 -0.3634 0.9015 -0.4933 30 1 -0.3633 -0.8781 -0.5341 31 1 3.2436 1.1517 -0.1156 32 1 2.7740 3.5353 -1.1093 33 1 1.5468 5.6506 -0.8458 34 1 -0.4619 5.7445 0.5714 35 1 -0.0521 1.5967 1.4678 36 1 1.7132 -2.0409 -0.5884 37 1 3.2488 -1.1543 -0.4338 38 1 4.2720 -0.9287 1.7969 39 1 2.8725 0.1325 2.0878 40 1 2.2215 -1.1840 4.0456 41 1 3.9385 -0.7306 4.2103 42 1 4.1526 -1.0786 6.9760 43 1 1.8418 -3.7825 3.1733 44 1 3.3600 -4.6702 2.8876 45 1 2.2983 -3.7963 0.7687 46 1 3.9438 -3.1743 1.0430 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347327905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:07 Heat of formation + Delta-G solvation = 58.837226 kcal Electronic energy + Delta-G solvation = -28347.844883 eV Core-core repulsion = 24434.398575 eV Total energy + Delta-G solvation = -3913.446309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.27933 -40.78841 -39.76980 -37.73350 -37.34689 -35.54713 -33.34290 -33.07209 -31.71777 -31.61757 -29.02829 -28.49576 -27.48259 -26.31836 -24.35134 -24.16669 -23.56221 -22.87444 -20.83850 -20.44611 -19.78249 -18.89231 -18.73099 -18.63468 -17.49586 -17.06713 -16.62970 -16.29373 -16.20946 -15.71312 -15.60942 -15.31426 -15.09047 -14.95770 -14.78097 -14.42358 -13.91551 -13.77802 -13.32950 -13.22002 -13.07803 -12.97376 -12.81963 -12.75358 -12.65680 -12.54663 -12.34505 -12.28713 -12.25021 -12.07796 -11.99395 -11.85018 -11.63482 -11.40224 -11.00164 -10.61583 -10.47468 -9.44178 -9.17941 -8.66040 -7.87806 -5.37601 -1.25377 -0.29513 0.28086 0.37624 1.17135 1.45399 1.45945 1.55695 2.40562 2.48927 3.11688 3.28500 3.32858 3.47904 3.68412 3.70806 3.83955 3.87172 3.96118 4.14304 4.20672 4.30933 4.35081 4.46491 4.52612 4.58003 4.66438 4.68190 4.71226 4.74113 4.78177 4.85193 4.90137 4.96984 5.03705 5.07334 5.11667 5.14463 5.19740 5.36921 5.47711 5.55822 5.58938 5.68863 5.75695 6.18630 6.26387 6.37676 6.43532 7.12581 7.82452 8.37115 9.18180 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012817 B = 0.002994 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.052047 B = 9349.263592 C =10142.617716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.141 4.141 4 C -0.047 4.047 5 C -0.046 4.046 6 C -0.103 4.103 7 C -0.061 4.061 8 C -0.065 4.065 9 N 0.030 4.970 10 O -0.212 6.212 11 O -0.158 6.158 12 C -0.070 4.070 13 C 0.089 3.911 14 N -0.538 5.538 15 C 0.055 3.945 16 C 0.187 3.813 17 N -0.615 5.615 18 C -0.264 4.264 19 H 0.069 0.931 20 C -0.052 4.052 21 N -0.939 5.939 22 Si 0.972 3.028 23 H -0.283 1.283 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.142 3.858 27 C 0.057 3.943 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.178 0.822 33 H 0.190 0.810 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.020 0.980 39 H 0.076 0.924 40 H -0.011 1.011 41 H 0.056 0.944 42 H 0.249 0.751 43 H 0.012 0.988 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.646 11.668 -21.322 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.081 4.081 3 C -0.160 4.160 4 C -0.048 4.048 5 C -0.064 4.064 6 C -0.121 4.121 7 C -0.080 4.080 8 C -0.148 4.148 9 N 0.544 4.456 10 O -0.417 6.417 11 O -0.378 6.378 12 C -0.089 4.089 13 C -0.038 4.038 14 N -0.263 5.263 15 C -0.075 4.075 16 C 0.061 3.939 17 N -0.339 5.339 18 C -0.394 4.394 19 H 0.087 0.913 20 C -0.247 4.247 21 N -0.585 5.585 22 Si 0.799 3.201 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.192 1.192 26 C 0.017 3.983 27 C -0.072 4.072 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.195 0.805 33 H 0.207 0.793 34 H 0.184 0.816 35 H 0.161 0.839 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.095 0.905 40 H 0.008 0.992 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.080 0.920 45 H 0.116 0.884 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.538 11.592 -21.339 24.540 hybrid contribution 0.772 -0.282 1.342 1.574 sum -2.765 11.310 -19.997 23.140 Atomic orbital electron populations 1.21095 0.91912 1.02862 1.01711 1.22087 0.96120 0.94239 0.95658 1.21524 0.99586 0.89750 1.05114 1.19034 0.93343 0.95710 0.96728 1.22230 0.99261 0.90507 0.94401 1.21620 0.92838 1.00191 0.97435 1.21483 0.96664 0.96750 0.93065 1.21248 0.90733 0.99216 1.03621 1.44053 1.02235 0.99804 0.99531 1.94590 1.71826 1.26514 1.48752 1.94458 1.57382 1.18774 1.67224 1.21589 0.94271 0.96568 0.96439 1.21163 0.98632 0.94642 0.89369 1.61846 1.50670 1.02332 1.11455 1.22554 0.93575 0.96385 0.94959 1.20597 0.96302 0.85099 0.91896 1.44391 1.41202 1.02890 1.45445 1.19569 1.09343 1.12067 0.98405 0.91329 1.25908 1.01335 0.99905 0.97560 1.70173 1.36974 1.28226 1.23156 0.85204 0.79196 0.78349 0.77311 1.21003 1.22218 1.19171 1.21147 0.94479 0.92828 0.89860 1.22469 0.97742 0.89330 0.97614 0.92037 0.91507 0.90343 0.84307 0.80486 0.79304 0.81605 0.83900 0.88486 0.93507 0.96174 0.90546 0.99241 0.92550 0.94160 0.96956 0.92005 0.88413 0.95456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 8.19 71.24 0.58 -1.94 16 2 C -0.08 -1.73 4.90 -17.60 -0.09 -1.81 16 3 C -0.14 -2.69 7.84 23.66 0.19 -2.50 16 4 C -0.05 -0.85 5.21 -20.12 -0.10 -0.95 16 5 C -0.05 -0.49 9.79 22.52 0.22 -0.27 16 6 C -0.10 -0.91 10.03 22.23 0.22 -0.68 16 7 C -0.06 -0.91 9.55 22.32 0.21 -0.70 16 8 C -0.07 -1.51 6.84 36.34 0.25 -1.26 16 9 N 0.03 0.89 4.45 -46.56 -0.21 0.68 16 10 O -0.21 -7.24 18.44 18.89 0.35 -6.90 16 11 O -0.16 -4.55 18.44 18.89 0.35 -4.20 16 12 C -0.07 -1.62 7.13 22.52 0.16 -1.46 16 13 C 0.09 2.06 5.15 85.55 0.44 2.50 16 14 N -0.54 -17.50 4.62 -899.83 -4.16 -21.65 16 15 C 0.05 2.07 5.38 86.38 0.46 2.54 16 16 C 0.19 9.44 5.38 86.35 0.46 9.91 16 17 N -0.62 -31.87 3.04 -698.12 -2.12 -33.99 16 18 C -0.26 -14.75 9.64 84.03 0.81 -13.94 16 19 H 0.07 3.70 7.85 -2.91 -0.02 3.68 16 20 C -0.05 -2.96 5.06 84.86 0.43 -2.53 16 21 N -0.94 -57.02 10.97 21.65 0.24 -56.78 16 22 Si 0.97 45.33 29.57 68.60 2.03 47.36 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 C 0.14 6.01 6.69 86.35 0.58 6.58 16 27 C 0.06 1.87 5.62 86.38 0.49 2.36 16 28 H 0.06 1.57 6.73 -2.39 -0.02 1.56 16 29 H 0.07 1.30 6.12 -2.39 -0.01 1.29 16 30 H 0.08 1.45 8.10 -2.38 -0.02 1.43 16 31 H 0.14 2.33 7.99 -2.91 -0.02 2.30 16 32 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.19 0.13 8.06 -2.91 -0.02 0.10 16 34 H 0.17 1.95 7.60 -2.91 -0.02 1.92 16 35 H 0.14 3.89 4.80 -2.91 -0.01 3.88 16 36 H 0.10 1.90 7.93 -2.39 -0.02 1.88 16 37 H 0.05 1.02 7.97 -2.39 -0.02 1.00 16 38 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 39 H 0.08 2.68 5.99 -2.39 -0.01 2.66 16 40 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 41 H 0.06 3.20 6.10 -2.38 -0.01 3.18 16 42 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.06 2.47 7.96 -2.39 -0.02 2.46 16 45 H 0.10 2.53 7.99 -2.39 -0.02 2.51 16 46 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -72.94 373.37 2.78 -70.16 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.99 Total: 9.49 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 5.32 Total: -4.17 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -6.25 Total: -111.74 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.70 Total: -11.09 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.94 2.78 -70.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347327905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.995 kcal (2) G-P(sol) polarization free energy of solvation -72.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds