Wall clock time and date at job start Sat Apr 11 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50696 * 109.47314 * 2 1 4 4 O 1.21297 * 119.99939 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00380 * 179.97438 * 3 2 1 6 6 C 1.39956 * 120.00152 * 184.62592 * 5 3 2 7 7 C 1.38991 * 119.99903 * 144.91916 * 6 5 3 8 8 C 1.38211 * 120.22622 * 179.72112 * 7 6 5 9 9 C 1.38027 * 120.21945 * 0.02562 * 8 7 6 10 10 C 1.39577 * 119.99766 * 359.97438 * 9 8 7 11 11 C 1.47856 * 120.10947 * 179.97438 * 10 9 8 12 12 O 1.21558 * 119.99452 * 179.97438 * 11 10 9 13 13 N 1.34770 * 120.00440 * 359.97438 * 11 10 9 14 14 C 1.46498 * 120.00339 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47137 * 179.97438 * 14 13 11 16 16 H 1.09004 * 112.96381 * 53.32623 * 15 14 13 17 17 C 1.53948 * 113.76747 * 184.99793 * 15 14 13 18 18 C 1.53947 * 86.28859 * 137.91163 * 17 15 14 19 19 N 1.47580 * 113.77270 * 281.49471 * 15 14 13 20 20 C 1.36931 * 134.48850 * 41.05621 * 19 15 14 21 21 H 1.07995 * 120.00573 * 0.02562 * 20 19 15 22 22 C 1.38818 * 119.99687 * 179.97438 * 20 19 15 23 23 N 1.31615 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00103 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46809 * 60.00540 * 24 22 20 26 26 H 1.48493 * 109.47339 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47399 * 300.00740 * 24 22 20 28 28 C 1.38594 * 120.00254 * 324.64510 * 6 5 3 29 29 H 1.09000 * 109.47571 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47473 * 300.00046 * 1 2 3 31 31 H 1.09001 * 109.47660 * 59.99999 * 1 2 3 32 32 H 1.09001 * 109.47473 * 239.99954 * 2 1 3 33 33 H 1.09001 * 109.47660 * 120.00001 * 2 1 3 34 34 H 0.96999 * 119.99581 * 4.63112 * 5 3 2 35 35 H 1.08004 * 119.88602 * 359.70170 * 7 6 5 36 36 H 1.07997 * 119.88787 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.99663 * 180.02562 * 9 8 7 38 38 H 0.97006 * 119.99673 * 359.97438 * 13 11 10 39 39 H 1.08997 * 109.47397 * 300.00179 * 14 13 11 40 40 H 1.09005 * 109.46872 * 59.99597 * 14 13 11 41 41 H 1.08997 * 113.74131 * 252.25785 * 17 15 14 42 42 H 1.09001 * 113.74367 * 23.45759 * 17 15 14 43 43 H 1.08997 * 113.76461 * 90.69330 * 18 17 15 44 44 H 1.08998 * 113.76874 * 221.98190 * 18 17 15 45 45 H 0.97003 * 120.00306 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.10866 * 0.25519 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8245 2.9827 0.0983 7 6 4.9948 3.2545 0.7971 8 6 5.4636 4.5512 0.8917 9 6 4.7722 5.5852 0.2933 10 6 3.5960 5.3228 -0.4108 11 6 2.8532 6.4286 -1.0523 12 8 1.8292 6.1977 -1.6654 13 7 3.3113 7.6925 -0.9574 14 6 2.5750 8.7882 -1.5926 15 6 3.3031 10.1089 -1.3348 16 1 4.3531 10.0796 -1.6260 17 6 2.5489 11.3454 -1.8565 18 6 2.9551 12.0260 -0.5367 19 7 3.0727 10.6619 0.0140 20 6 2.9980 10.1248 1.2714 21 1 3.1235 9.0615 1.4128 22 6 2.7620 10.9472 2.3645 23 7 2.6096 12.2431 2.1923 24 14 2.6593 10.2145 4.0797 25 1 3.9415 9.5410 4.4078 26 1 2.4011 11.2951 5.0650 27 1 1.5533 9.2248 4.1299 28 6 3.1233 4.0139 -0.5065 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9872 0.9325 -0.0669 35 1 5.5397 2.4496 1.2681 36 1 6.3737 4.7561 1.4357 37 1 5.1420 6.5971 0.3691 38 1 4.1282 7.8768 -0.4679 39 1 2.5135 8.6104 -2.6662 40 1 1.5695 8.8405 -1.1749 41 1 3.0019 11.7954 -2.7398 42 1 1.4747 11.1926 -1.9609 43 1 3.9034 12.5607 -0.5919 44 1 2.1591 12.6173 -0.0841 45 1 2.4443 12.8178 2.9560 46 1 2.2138 3.8047 -1.0503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038318921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:13 Heat of formation + Delta-G solvation = 9.235800 kcal Electronic energy + Delta-G solvation = -27821.560082 eV Core-core repulsion = 23905.962894 eV Total energy + Delta-G solvation = -3915.597188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.83271 -39.61025 -38.30504 -37.65907 -35.01391 -34.05618 -33.19177 -32.16817 -31.22570 -29.85104 -27.98561 -27.55244 -25.11376 -23.96376 -23.34175 -22.50673 -21.92929 -20.49503 -20.25688 -19.17862 -18.26935 -17.49120 -16.65902 -16.44072 -16.09061 -15.86249 -15.69007 -15.24787 -14.63392 -14.55693 -14.43369 -14.05749 -13.81756 -13.73163 -13.52002 -13.20483 -12.99193 -12.71413 -12.56207 -12.10493 -11.99832 -11.84046 -11.66280 -11.51710 -11.39686 -11.07219 -10.98699 -10.70715 -10.58821 -10.54020 -10.01241 -9.99561 -9.74439 -9.65444 -9.32618 -9.03175 -8.77256 -8.53208 -8.34592 -6.87505 -5.74208 -3.06648 0.81435 1.23360 2.30616 2.71486 3.07239 3.40467 3.46061 3.46694 3.55256 3.94108 4.30638 4.45717 4.65536 4.69958 4.73834 4.79385 5.05120 5.08049 5.12810 5.17126 5.36359 5.38355 5.43060 5.45147 5.59576 5.64141 5.72436 5.81333 5.93353 5.94531 6.08888 6.12410 6.17247 6.27529 6.34088 6.38467 6.43118 6.64479 6.74188 6.82658 6.93238 7.06823 7.26916 7.43328 7.61506 7.85241 7.92239 8.00836 8.58343 9.06737 9.73482 10.61545 11.42507 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002922 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.000504 B = 9580.195506 C =10204.193993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 C 0.504 3.496 4 O -0.508 6.508 5 N -0.676 5.676 6 C 0.129 3.871 7 C -0.125 4.125 8 C -0.108 4.108 9 C -0.097 4.097 10 C -0.109 4.109 11 C 0.552 3.448 12 O -0.542 6.542 13 N -0.708 5.708 14 C 0.123 3.877 15 C 0.126 3.874 16 H 0.050 0.950 17 C -0.156 4.156 18 C 0.159 3.841 19 N -0.603 5.603 20 C -0.219 4.219 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.920 5.920 24 Si 0.906 3.094 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C -0.064 4.064 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.410 0.590 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.401 0.599 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.026 0.974 44 H 0.073 0.927 45 H 0.253 0.747 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.268 -22.857 -6.233 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.180 4.180 3 C 0.291 3.709 4 O -0.381 6.381 5 N -0.322 5.322 6 C 0.035 3.965 7 C -0.145 4.145 8 C -0.126 4.126 9 C -0.117 4.117 10 C -0.113 4.113 11 C 0.339 3.661 12 O -0.421 6.421 13 N -0.358 5.358 14 C -0.001 4.001 15 C 0.018 3.982 16 H 0.067 0.933 17 C -0.195 4.195 18 C 0.034 3.966 19 N -0.329 5.329 20 C -0.347 4.347 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.085 4.085 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.246 0.754 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.237 0.763 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.842 -22.343 -6.305 23.716 hybrid contribution 0.930 -0.616 1.421 1.807 sum 5.772 -22.959 -4.884 24.172 Atomic orbital electron populations 1.21561 0.92588 1.01814 1.03837 1.21626 0.99076 0.92782 1.04509 1.21100 0.81602 0.92525 0.75629 1.90812 1.54890 1.46109 1.46311 1.43528 1.07982 1.06864 1.73865 1.17605 0.95597 0.84470 0.98818 1.21031 0.96685 0.97697 0.99133 1.20888 1.00274 0.91721 0.99730 1.21427 0.94032 0.99923 0.96288 1.19961 0.96286 0.93941 1.01095 1.18182 0.84663 0.82836 0.80437 1.90754 1.24313 1.84097 1.42912 1.45879 1.28670 1.06287 1.54956 1.21796 0.96838 0.85222 0.96293 1.22510 0.96265 0.91448 0.87970 0.93301 1.23774 1.00200 0.97137 0.98344 1.22193 0.98364 0.88814 0.87239 1.46063 1.83065 1.03343 1.00421 1.18897 1.42190 0.91978 0.81640 0.90433 1.24744 1.02404 0.95483 0.97646 1.69805 1.54906 1.02561 1.29473 0.86293 0.77978 0.77826 0.84280 1.21208 1.21558 1.21077 1.21365 1.00087 0.90368 0.96687 0.91855 0.91735 0.91677 0.88637 0.88631 0.75408 0.85452 0.84894 0.85086 0.76293 0.92019 0.90814 0.92797 0.90466 0.95577 0.90828 0.93654 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.20 37.15 0.34 -0.71 16 2 C -0.14 -0.85 6.42 -27.89 -0.18 -1.03 16 3 C 0.50 5.35 7.67 -10.99 -0.08 5.26 16 4 O -0.51 -8.09 13.43 5.54 0.07 -8.01 16 5 N -0.68 -5.98 5.34 -9.89 -0.05 -6.03 16 6 C 0.13 1.55 6.29 -83.74 -0.53 1.02 16 7 C -0.12 -1.24 9.96 -39.31 -0.39 -1.63 16 8 C -0.11 -1.15 10.02 -39.67 -0.40 -1.55 16 9 C -0.10 -1.29 9.54 -39.16 -0.37 -1.66 16 10 C -0.11 -1.76 5.87 -104.99 -0.62 -2.38 16 11 C 0.55 10.51 7.77 -12.33 -0.10 10.41 16 12 O -0.54 -12.09 16.35 5.31 0.09 -12.01 16 13 N -0.71 -12.78 5.48 -61.25 -0.34 -13.11 16 14 C 0.12 2.33 5.54 -4.04 -0.02 2.31 16 15 C 0.13 2.46 4.33 -66.86 -0.29 2.17 16 16 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 17 C -0.16 -2.89 7.86 -25.80 -0.20 -3.10 16 18 C 0.16 3.69 7.51 -2.97 -0.02 3.67 16 19 N -0.60 -14.90 3.57 -170.73 -0.61 -15.51 16 20 C -0.22 -5.99 10.51 -15.06 -0.16 -6.15 16 21 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 23 N -0.92 -27.31 11.39 55.49 0.63 -26.68 16 24 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 28 C -0.06 -1.01 8.25 -38.98 -0.32 -1.33 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.41 1.86 8.82 -40.82 -0.36 1.50 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.61 6.40 -52.49 -0.34 1.27 16 38 H 0.40 6.70 6.50 -40.82 -0.27 6.43 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.07 1.90 7.16 -51.93 -0.37 1.53 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.15 2.74 5.82 -52.48 -0.31 2.44 16 LS Contribution 385.03 15.07 5.80 5.80 Total: -1.00 -36.64 385.03 -9.54 -46.17 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -6.67 Total: 6.91 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: -3.44 Total: 5.03 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.37 Total: -61.33 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.16 Total: -20.02 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.64 -9.54 -46.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038318921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.406 kcal (2) G-P(sol) polarization free energy of solvation -36.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds