Wall clock time and date at job start Sat Apr 11 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.50696 * 109.47314 * 2 1 4 4 O 1.21297 * 119.99939 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00380 * 179.97438 * 3 2 1 6 6 C 1.39956 * 120.00152 * 184.62592 * 5 3 2 7 7 C 1.38991 * 119.99903 * 144.91916 * 6 5 3 8 8 C 1.38211 * 120.22622 * 179.72112 * 7 6 5 9 9 C 1.38027 * 120.21945 * 0.02562 * 8 7 6 10 10 C 1.39577 * 119.99766 * 359.97438 * 9 8 7 11 11 C 1.47856 * 120.10947 * 179.97438 * 10 9 8 12 12 O 1.21558 * 119.99452 * 179.97438 * 11 10 9 13 13 N 1.34770 * 120.00440 * 359.97438 * 11 10 9 14 14 C 1.46498 * 120.00339 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47137 * 179.97438 * 14 13 11 16 16 H 1.09004 * 112.96381 * 53.32623 * 15 14 13 17 17 C 1.53948 * 113.76747 * 184.99793 * 15 14 13 18 18 C 1.53947 * 86.28859 * 137.91163 * 17 15 14 19 19 N 1.47580 * 113.77270 * 281.49471 * 15 14 13 20 20 C 1.36931 * 134.48850 * 41.05621 * 19 15 14 21 21 H 1.07995 * 120.00573 * 0.02562 * 20 19 15 22 22 C 1.38818 * 119.99687 * 179.97438 * 20 19 15 23 23 N 1.31615 * 119.99946 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00103 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46809 * 60.00540 * 24 22 20 26 26 H 1.48493 * 109.47339 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47399 * 300.00740 * 24 22 20 28 28 C 1.38594 * 120.00254 * 324.64510 * 6 5 3 29 29 H 1.09000 * 109.47571 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47473 * 300.00046 * 1 2 3 31 31 H 1.09001 * 109.47660 * 59.99999 * 1 2 3 32 32 H 1.09001 * 109.47473 * 239.99954 * 2 1 3 33 33 H 1.09001 * 109.47660 * 120.00001 * 2 1 3 34 34 H 0.96999 * 119.99581 * 4.63112 * 5 3 2 35 35 H 1.08004 * 119.88602 * 359.70170 * 7 6 5 36 36 H 1.07997 * 119.88787 * 180.02562 * 8 7 6 37 37 H 1.07999 * 119.99663 * 180.02562 * 9 8 7 38 38 H 0.97006 * 119.99673 * 359.97438 * 13 11 10 39 39 H 1.08997 * 109.47397 * 300.00179 * 14 13 11 40 40 H 1.09005 * 109.46872 * 59.99597 * 14 13 11 41 41 H 1.08997 * 113.74131 * 252.25785 * 17 15 14 42 42 H 1.09001 * 113.74367 * 23.45759 * 17 15 14 43 43 H 1.08997 * 113.76461 * 90.69330 * 18 17 15 44 44 H 1.08998 * 113.76874 * 221.98190 * 18 17 15 45 45 H 0.97003 * 120.00306 * 179.97438 * 23 22 20 46 46 H 1.08003 * 120.10866 * 0.25519 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8245 2.9827 0.0983 7 6 4.9948 3.2545 0.7971 8 6 5.4636 4.5512 0.8917 9 6 4.7722 5.5852 0.2933 10 6 3.5960 5.3228 -0.4108 11 6 2.8532 6.4286 -1.0523 12 8 1.8292 6.1977 -1.6654 13 7 3.3113 7.6925 -0.9574 14 6 2.5750 8.7882 -1.5926 15 6 3.3031 10.1089 -1.3348 16 1 4.3531 10.0796 -1.6260 17 6 2.5489 11.3454 -1.8565 18 6 2.9551 12.0260 -0.5367 19 7 3.0727 10.6619 0.0140 20 6 2.9980 10.1248 1.2714 21 1 3.1235 9.0615 1.4128 22 6 2.7620 10.9472 2.3645 23 7 2.6096 12.2431 2.1923 24 14 2.6593 10.2145 4.0797 25 1 3.9415 9.5410 4.4078 26 1 2.4011 11.2951 5.0650 27 1 1.5533 9.2248 4.1299 28 6 3.1233 4.0139 -0.5065 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9872 0.9325 -0.0669 35 1 5.5397 2.4496 1.2681 36 1 6.3737 4.7561 1.4357 37 1 5.1420 6.5971 0.3691 38 1 4.1282 7.8768 -0.4679 39 1 2.5135 8.6104 -2.6662 40 1 1.5695 8.8405 -1.1749 41 1 3.0019 11.7954 -2.7398 42 1 1.4747 11.1926 -1.9609 43 1 3.9034 12.5607 -0.5919 44 1 2.1591 12.6173 -0.0841 45 1 2.4443 12.8178 2.9560 46 1 2.2138 3.8047 -1.0503 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038318921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:10 Heat of formation + Delta-G solvation = -17.285055 kcal Electronic energy + Delta-G solvation = -27822.710113 eV Core-core repulsion = 23905.962894 eV Total energy + Delta-G solvation = -3916.747219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.78378 -40.91730 -39.74544 -39.02907 -35.99889 -35.57252 -34.22343 -33.82264 -32.28999 -30.82745 -29.90037 -29.11354 -25.84013 -25.30206 -25.22635 -23.49572 -23.35305 -21.63585 -21.28374 -20.86969 -19.55017 -18.48825 -18.25551 -17.44351 -17.22936 -17.10647 -17.00551 -16.70665 -16.24539 -15.79656 -15.56519 -15.51833 -15.21093 -14.90810 -14.71713 -14.56734 -14.33860 -13.81091 -13.51783 -13.29100 -13.21596 -12.94360 -12.91030 -12.79054 -12.68354 -12.62214 -12.59988 -12.33277 -12.06030 -11.87344 -11.57795 -11.52699 -11.41598 -10.96048 -10.90246 -10.82929 -10.22417 -9.91897 -9.27077 -8.89249 -7.87678 -5.19155 -0.23224 0.24745 1.41217 1.45268 1.48485 1.49980 1.82359 1.95577 2.19673 2.46672 2.82642 3.30855 3.36872 3.59738 3.70806 3.89377 3.97283 4.04068 4.09816 4.17912 4.18494 4.24212 4.32537 4.40957 4.47379 4.58855 4.68089 4.72050 4.85325 4.87739 4.95307 5.02221 5.05071 5.06976 5.18392 5.24853 5.29061 5.32387 5.33653 5.37513 5.42371 5.60535 5.74082 5.90410 5.97919 6.39534 6.47729 6.95295 7.12579 7.14319 7.64633 8.59323 9.29013 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013105 B = 0.002922 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.000504 B = 9580.195506 C =10204.193993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.495 3.505 4 O -0.572 6.572 5 N -0.659 5.659 6 C 0.125 3.875 7 C -0.102 4.102 8 C -0.100 4.100 9 C -0.102 4.102 10 C -0.138 4.138 11 C 0.547 3.453 12 O -0.588 6.588 13 N -0.702 5.702 14 C 0.130 3.870 15 C 0.134 3.866 16 H 0.077 0.923 17 C -0.131 4.131 18 C 0.151 3.849 19 N -0.630 5.630 20 C -0.215 4.215 21 H 0.081 0.919 22 C -0.068 4.068 23 N -0.953 5.953 24 Si 0.964 3.036 25 H -0.269 1.269 26 H -0.295 1.295 27 H -0.291 1.291 28 C -0.091 4.091 29 H 0.092 0.908 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.434 0.566 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.138 0.862 38 H 0.409 0.591 39 H 0.081 0.919 40 H 0.038 0.962 41 H 0.097 0.903 42 H 0.075 0.925 43 H 0.026 0.974 44 H 0.038 0.962 45 H 0.246 0.754 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.440 -26.077 -5.873 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.285 3.715 4 O -0.450 6.450 5 N -0.307 5.307 6 C 0.031 3.969 7 C -0.122 4.122 8 C -0.118 4.118 9 C -0.122 4.122 10 C -0.141 4.141 11 C 0.336 3.664 12 O -0.471 6.471 13 N -0.352 5.352 14 C 0.006 3.994 15 C 0.028 3.972 16 H 0.094 0.906 17 C -0.170 4.170 18 C 0.026 3.974 19 N -0.357 5.357 20 C -0.343 4.343 21 H 0.099 0.901 22 C -0.261 4.261 23 N -0.603 5.603 24 Si 0.793 3.207 25 H -0.195 1.195 26 H -0.221 1.221 27 H -0.218 1.218 28 C -0.112 4.112 29 H 0.110 0.890 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.275 0.725 35 H 0.193 0.807 36 H 0.189 0.811 37 H 0.155 0.845 38 H 0.246 0.754 39 H 0.100 0.900 40 H 0.057 0.943 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.090 -25.619 -5.969 27.521 hybrid contribution -0.032 0.295 1.252 1.287 sum 8.058 -25.325 -4.717 26.991 Atomic orbital electron populations 1.21584 0.94126 1.02855 1.01545 1.21706 0.97613 0.89844 1.07591 1.22069 0.81585 0.93821 0.74007 1.90808 1.56553 1.48376 1.49242 1.43452 1.08089 1.06442 1.72703 1.17758 0.95912 0.84950 0.98299 1.21532 0.95073 0.98822 0.96796 1.21365 1.00800 0.91176 0.98449 1.21581 0.93141 1.01316 0.96137 1.19788 0.97926 0.92982 1.03434 1.18766 0.84239 0.83660 0.79739 1.90714 1.26434 1.84803 1.45111 1.45817 1.28695 1.05914 1.54798 1.21618 0.95063 0.85522 0.97236 1.22685 0.97642 0.91780 0.85133 0.90611 1.23575 1.00350 0.95441 0.97617 1.22169 0.97341 0.88255 0.89632 1.46406 1.83297 1.04706 1.01284 1.19225 1.39923 0.92205 0.82968 0.90105 1.25480 1.03636 0.95979 1.01016 1.69982 1.57050 1.03590 1.29684 0.85371 0.78193 0.76734 0.80434 1.19455 1.22092 1.21758 1.21205 0.99887 0.91702 0.98400 0.88966 0.94046 0.94110 0.85370 0.85229 0.72512 0.80662 0.81119 0.84468 0.75387 0.90042 0.94329 0.88481 0.90633 0.95582 0.94355 0.94505 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.20 71.98 0.66 -1.41 16 2 C -0.13 -1.23 6.42 29.84 0.19 -1.04 16 3 C 0.49 10.18 7.67 87.66 0.67 10.85 16 4 O -0.57 -19.41 13.43 -3.08 -0.04 -19.45 16 5 N -0.66 -10.13 5.34 -303.59 -1.62 -11.75 16 6 C 0.13 2.80 6.29 38.11 0.24 3.04 16 7 C -0.10 -1.58 9.96 22.44 0.22 -1.35 16 8 C -0.10 -1.73 10.02 22.21 0.22 -1.51 16 9 C -0.10 -2.56 9.54 22.54 0.22 -2.34 16 10 C -0.14 -4.55 5.87 -20.11 -0.12 -4.67 16 11 C 0.55 21.81 7.77 86.79 0.67 22.48 16 12 O -0.59 -28.14 16.35 -3.90 -0.06 -28.21 16 13 N -0.70 -25.68 5.48 -465.96 -2.55 -28.23 16 14 C 0.13 4.97 5.54 86.38 0.48 5.45 16 15 C 0.13 5.08 4.33 45.09 0.20 5.27 16 16 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 17 C -0.13 -4.69 7.86 31.25 0.25 -4.44 16 18 C 0.15 7.07 7.51 86.48 0.65 7.72 16 19 N -0.63 -31.31 3.57 -694.07 -2.48 -33.80 16 20 C -0.21 -11.84 10.51 84.04 0.88 -10.96 16 21 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 22 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 23 N -0.95 -58.23 11.39 21.65 0.25 -57.98 16 24 Si 0.96 46.92 29.55 68.60 2.03 48.95 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 27 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 28 C -0.09 -2.96 8.25 22.66 0.19 -2.77 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.77 8.10 -2.39 -0.02 0.76 16 31 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 32 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.43 2.14 8.82 -92.71 -0.82 1.32 16 35 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.14 3.15 6.40 -2.91 -0.02 3.13 16 38 H 0.41 13.49 6.50 -92.70 -0.60 12.89 16 39 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 40 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 43 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.04 2.05 7.16 -2.39 -0.02 2.03 16 45 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 46 H 0.11 4.56 5.82 -2.91 -0.02 4.54 16 Total: -1.00 -88.00 385.03 1.20 -86.80 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.41 Total: 22.83 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 6.09 Total: 20.83 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -6.41 Total: -131.75 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.11 Total: -47.66 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -88.00 1.20 -86.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038318921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.518 kcal (2) G-P(sol) polarization free energy of solvation -88.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds