Wall clock time and date at job start Sat Apr 11 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.64442 * 2 1 4 4 C 1.54325 * 110.72233 * 236.66640 * 2 1 3 5 5 N 1.47023 * 107.27366 * 219.44485 * 4 2 1 6 6 C 1.34776 * 125.64652 * 178.95924 * 5 4 2 7 7 O 1.21509 * 120.00355 * 354.06210 * 6 5 4 8 8 C 1.48161 * 119.99891 * 174.06131 * 6 5 4 9 9 C 1.39614 * 120.88978 * 343.42064 * 8 6 5 10 10 C 1.38854 * 118.94703 * 179.77696 * 9 8 6 11 11 O 1.35691 * 119.62125 * 180.25027 * 10 9 8 12 12 N 1.32199 * 120.75785 * 0.51085 * 10 9 8 13 13 C 1.31885 * 121.96874 * 359.74124 * 12 10 9 14 14 C 1.50703 * 119.51091 * 180.02562 * 13 12 10 15 15 C 1.52991 * 117.49657 * 163.59905 * 14 13 12 16 16 C 1.52992 * 117.49733 * 94.97482 * 14 13 12 17 17 C 1.38020 * 120.97657 * 359.97438 * 13 12 10 18 18 C 1.47424 * 108.70272 * 358.93502 * 5 4 2 19 19 C 1.54913 * 104.82973 * 24.13400 * 18 5 4 20 20 H 1.08993 * 111.03957 * 81.07476 * 19 18 5 21 21 N 1.46497 * 111.00114 * 204.91287 * 19 18 5 22 22 C 1.36936 * 119.99996 * 267.19499 * 21 19 18 23 23 H 1.08000 * 120.00247 * 359.97438 * 22 21 19 24 24 C 1.38819 * 120.00013 * 180.02562 * 22 21 19 25 25 N 1.31621 * 119.99803 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99887 * 180.27562 * 24 22 21 27 27 H 1.48509 * 109.46922 * 179.72138 * 26 24 22 28 28 H 1.48501 * 109.47179 * 299.72031 * 26 24 22 29 29 H 1.48499 * 109.47149 * 59.72287 * 26 24 22 30 30 H 1.09001 * 109.46797 * 296.85565 * 1 2 3 31 31 H 1.08992 * 109.46938 * 56.85730 * 1 2 3 32 32 H 1.09006 * 109.46935 * 176.86096 * 1 2 3 33 33 H 1.08998 * 109.87951 * 338.86162 * 4 2 1 34 34 H 1.08997 * 109.88226 * 100.02354 * 4 2 1 35 35 H 1.07996 * 120.52765 * 0.02562 * 9 8 6 36 36 H 0.96707 * 113.99705 * 270.25808 * 11 10 9 37 37 H 1.08997 * 115.54827 * 309.30547 * 14 13 12 38 38 H 1.09005 * 117.50575 * 359.97438 * 15 14 13 39 39 H 1.08999 * 117.49835 * 145.02021 * 15 14 13 40 40 H 1.08995 * 117.50260 * 214.97566 * 16 14 13 41 41 H 1.09000 * 117.50001 * 359.97438 * 16 14 13 42 42 H 1.07991 * 120.43524 * 179.97438 * 17 13 12 43 43 H 1.08991 * 110.36858 * 265.29044 * 18 5 4 44 44 H 1.09000 * 110.36495 * 142.96524 * 18 5 4 45 45 H 0.97003 * 119.99953 * 87.19881 * 21 19 18 46 46 H 0.96994 * 119.99862 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7932 -1.2059 5 7 3.2445 -1.5520 -0.7364 6 6 3.9921 -2.3863 -1.4858 7 8 3.6569 -2.6453 -2.6247 8 6 5.2227 -2.9877 -0.9208 9 6 5.8154 -2.4612 0.2283 10 6 6.9655 -3.0594 0.7257 11 8 7.5501 -2.5620 1.8447 12 7 7.5004 -4.1049 0.1187 13 6 6.9712 -4.6259 -0.9712 14 6 7.6269 -5.8188 -1.6178 15 6 6.7999 -6.6196 -2.6254 16 6 7.0981 -7.2047 -1.2435 17 6 5.8250 -4.0953 -1.5278 18 6 3.4634 -1.2486 0.6895 19 6 2.0790 -0.7935 1.2151 20 1 1.4449 -1.6508 1.4406 21 7 2.2215 0.0735 2.3873 22 6 2.1869 -0.4654 3.6457 23 1 2.0540 -1.5295 3.7741 24 6 2.3214 0.3562 4.7566 25 7 2.4828 1.6531 4.6002 26 14 2.2818 -0.3799 6.4729 27 1 2.4519 0.6996 7.4785 28 1 0.9789 -1.0584 6.6906 29 1 3.3832 -1.3659 6.6142 30 1 -0.3633 0.4643 0.9169 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3633 -1.0262 -0.0563 33 1 1.3130 -1.4784 -1.5751 34 1 2.3741 -0.1057 -1.9975 35 1 5.3840 -1.6046 0.7248 36 1 8.2112 -1.8777 1.6721 37 1 8.6960 -5.7223 -1.8072 38 1 5.7813 -6.2840 -2.8204 39 1 7.3248 -7.0501 -3.4782 40 1 7.8190 -8.0202 -1.1872 41 1 6.2761 -7.2538 -0.5293 42 1 5.3993 -4.5286 -2.4207 43 1 4.1932 -0.4466 0.7991 44 1 3.7961 -2.1406 1.2204 45 1 2.3404 1.0293 2.2721 46 1 2.5771 2.2271 5.3763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054758024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:54:46 Heat of formation + Delta-G solvation = 16.826819 kcal Electronic energy + Delta-G solvation = -28450.013240 eV Core-core repulsion = 24534.745223 eV Total energy + Delta-G solvation = -3915.268017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10257 -39.71549 -38.03689 -37.68480 -36.28820 -34.25308 -33.32195 -32.11601 -30.82216 -30.15029 -27.80208 -26.73895 -25.18167 -24.16813 -23.77628 -22.55214 -21.99009 -21.17193 -20.12844 -19.65746 -18.31014 -17.38955 -17.19488 -16.92305 -16.14756 -16.09437 -15.72650 -15.40266 -15.01330 -14.70571 -14.55665 -14.08629 -13.69422 -13.37210 -13.25955 -13.11163 -12.84339 -12.80237 -12.45136 -12.17203 -11.95243 -11.91358 -11.74162 -11.59859 -11.17310 -11.04802 -10.94697 -10.76231 -10.72025 -10.68819 -10.34339 -10.25267 -10.08088 -9.92039 -9.81522 -9.50155 -9.08072 -8.90569 -8.53399 -7.16809 -5.91513 -3.22969 0.57695 0.79910 2.72937 2.91927 3.18638 3.37730 3.42891 3.43560 3.57934 3.66246 4.16655 4.29638 4.49499 4.58217 4.65003 4.83107 4.84761 4.85368 4.89709 5.03346 5.12833 5.22392 5.36887 5.39922 5.45520 5.51190 5.56898 5.58959 5.63451 5.72837 5.77446 5.81947 5.85567 5.90756 5.94403 6.10318 6.11098 6.22323 6.26186 6.33978 6.38351 6.54109 6.74223 7.37947 7.52704 7.58276 7.74169 8.07923 8.25561 9.38111 9.89295 10.24500 11.29977 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011252 B = 0.003593 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.842700 B = 7792.001503 C = 9565.727501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 H 0.086 0.914 4 C 0.116 3.884 5 N -0.602 5.602 6 C 0.570 3.430 7 O -0.540 6.540 8 C -0.063 4.063 9 C -0.171 4.171 10 C 0.314 3.686 11 O -0.474 6.474 12 N -0.485 5.485 13 C 0.174 3.826 14 C -0.108 4.108 15 C -0.172 4.172 16 C -0.161 4.161 17 C -0.127 4.127 18 C 0.060 3.940 19 C 0.177 3.823 20 H 0.071 0.929 21 N -0.707 5.707 22 C -0.253 4.253 23 H 0.072 0.928 24 C -0.004 4.004 25 N -0.928 5.928 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.285 1.285 29 H -0.283 1.283 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.171 0.829 36 H 0.402 0.598 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.150 0.850 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.388 0.612 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 -9.768 -13.833 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.135 4.135 3 H 0.104 0.896 4 C -0.006 4.006 5 N -0.334 5.334 6 C 0.358 3.642 7 O -0.419 6.419 8 C -0.074 4.074 9 C -0.192 4.192 10 C 0.135 3.865 11 O -0.281 6.281 12 N -0.205 5.205 13 C 0.036 3.964 14 C -0.127 4.127 15 C -0.209 4.209 16 C -0.198 4.198 17 C -0.148 4.148 18 C -0.066 4.066 19 C 0.064 3.936 20 H 0.089 0.911 21 N -0.346 5.346 22 C -0.383 4.383 23 H 0.090 0.910 24 C -0.201 4.201 25 N -0.575 5.575 26 Si 0.737 3.263 27 H -0.216 1.216 28 H -0.211 1.211 29 H -0.210 1.210 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.188 0.812 36 H 0.259 0.741 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.168 0.832 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.222 0.778 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.277 -10.692 -13.576 18.751 hybrid contribution -0.150 0.767 0.642 1.012 sum 7.127 -9.925 -12.934 17.793 Atomic orbital electron populations 1.21661 0.93739 1.01611 1.02157 1.22552 0.96707 0.99828 0.94451 0.89599 1.22062 0.87163 0.94288 0.97095 1.48384 1.29537 1.43070 1.12441 1.17763 0.82657 0.78808 0.84974 1.90750 1.71585 1.61361 1.18204 1.20180 0.95714 0.96287 0.95206 1.23297 0.97365 1.02915 0.95629 1.18969 0.90706 0.90263 0.86530 1.84858 1.58875 1.58525 1.25797 1.66668 1.34478 1.11138 1.08218 1.19937 0.91564 0.94885 0.89965 1.20748 0.99455 0.89284 1.03190 1.23143 1.01454 1.02928 0.93416 1.22990 1.03482 0.94924 0.98445 1.22020 0.95741 0.95688 1.01302 1.23974 1.03130 1.00837 0.78615 1.21394 0.91461 0.93889 0.86818 0.91125 1.42282 1.86068 1.06208 1.00088 1.19192 1.43387 0.92712 0.83032 0.91007 1.24751 1.01942 0.95399 0.98012 1.69642 1.55576 1.02688 1.29615 0.86278 0.78015 0.77888 0.84074 1.21593 1.21118 1.20982 0.91199 0.93136 0.92867 0.91193 0.91618 0.81239 0.74068 0.85795 0.87989 0.87793 0.87985 0.88541 0.83234 0.90559 0.90366 0.77788 0.93215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.16 37.16 0.34 -1.47 16 2 C -0.12 -1.70 3.20 -88.78 -0.28 -1.98 16 3 H 0.09 1.29 8.00 -51.93 -0.42 0.87 16 4 C 0.12 1.64 6.47 -3.06 -0.02 1.62 16 5 N -0.60 -9.23 3.33 -171.52 -0.57 -9.80 16 6 C 0.57 9.13 7.75 -12.19 -0.09 9.04 16 7 O -0.54 -9.75 16.89 5.36 0.09 -9.66 16 8 C -0.06 -0.92 5.81 -104.68 -0.61 -1.53 16 9 C -0.17 -2.43 8.18 -38.84 -0.32 -2.75 16 10 C 0.31 4.48 7.74 -17.17 -0.13 4.35 16 11 O -0.47 -6.26 13.56 -18.78 -0.25 -6.51 16 12 N -0.49 -6.93 10.27 -9.59 -0.10 -7.03 16 13 C 0.17 2.21 6.45 -82.65 -0.53 1.67 16 14 C -0.11 -1.05 6.21 -91.78 -0.57 -1.62 16 15 C -0.17 -1.34 9.79 -26.74 -0.26 -1.60 16 16 C -0.16 -1.36 10.23 -26.74 -0.27 -1.63 16 17 C -0.13 -1.66 8.92 -39.03 -0.35 -2.01 16 18 C 0.06 0.97 4.63 -2.53 -0.01 0.96 16 19 C 0.18 3.14 3.16 -65.78 -0.21 2.94 16 20 H 0.07 1.31 8.00 -51.93 -0.42 0.89 16 21 N -0.71 -15.81 5.24 -51.35 -0.27 -16.08 16 22 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 24 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 25 N -0.93 -26.26 13.06 55.49 0.72 -25.54 16 26 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.17 2.43 4.04 -52.49 -0.21 2.22 16 36 H 0.40 3.17 9.06 45.56 0.41 3.58 16 37 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.10 0.82 6.39 -51.93 -0.33 0.49 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.15 1.79 6.01 -52.49 -0.32 1.47 16 43 H 0.08 1.25 7.06 -51.93 -0.37 0.88 16 44 H 0.08 1.30 6.44 -51.93 -0.33 0.97 16 45 H 0.39 9.23 7.76 -40.82 -0.32 8.92 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -31.32 378.11 -8.89 -40.21 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -5.62 Total: 13.16 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -3.57 Total: -0.82 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.21 Total: -58.45 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.16 Total: -16.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.32 -8.89 -40.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054758024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.038 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds