Wall clock time and date at job start Sat Apr 11 2020 02:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.51315 * 2 1 4 4 C 1.53287 * 109.51232 * 120.10325 * 2 1 3 5 5 N 1.47162 * 108.49694 * 172.90246 * 4 2 1 6 6 C 1.34776 * 121.05657 * 128.78521 * 5 4 2 7 7 O 1.21555 * 119.99565 * 185.84708 * 6 5 4 8 8 C 1.47838 * 120.00006 * 5.84628 * 6 5 4 9 9 C 1.40024 * 120.55875 * 37.84023 * 8 6 5 10 10 C 1.38354 * 118.28897 * 179.97438 * 9 8 6 11 11 C 1.38348 * 119.30516 * 359.97438 * 10 9 8 12 12 N 1.31933 * 121.07722 * 359.72845 * 11 10 9 13 13 C 1.31699 * 121.87913 * 0.56365 * 12 11 10 14 14 C 1.47299 * 117.88465 * 309.05729 * 5 4 2 15 15 C 1.52108 * 108.67660 * 49.02274 * 14 5 4 16 16 C 1.54521 * 110.11111 * 187.40644 * 15 14 5 17 17 C 1.55017 * 101.53340 * 207.07641 * 16 15 14 18 18 N 1.47482 * 104.90093 * 36.36962 * 17 16 15 19 19 C 1.36933 * 125.66622 * 155.99949 * 18 17 16 20 20 H 1.08006 * 120.00506 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99912 * 359.97438 * 19 18 17 22 22 N 1.31615 * 120.00133 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00082 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47164 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47074 * 119.99773 * 23 21 19 26 26 H 1.48498 * 109.47241 * 239.99695 * 23 21 19 27 27 C 1.47186 * 108.67218 * 335.99080 * 18 17 16 28 28 O 1.42053 * 111.21412 * 310.02684 * 15 14 5 29 29 H 1.08996 * 109.47162 * 299.89959 * 1 2 3 30 30 H 1.09004 * 109.46833 * 59.89204 * 1 2 3 31 31 H 1.08995 * 109.47231 * 179.89523 * 1 2 3 32 32 H 1.09003 * 109.62745 * 53.20469 * 4 2 1 33 33 H 1.08989 * 109.80010 * 292.70391 * 4 2 1 34 34 H 1.08003 * 120.85368 * 359.97438 * 9 8 6 35 35 H 1.07997 * 120.35008 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.46309 * 180.02562 * 11 10 9 37 37 H 1.07996 * 119.71850 * 179.71446 * 13 12 11 38 38 H 1.09003 * 109.63604 * 168.77067 * 14 5 4 39 39 H 1.08995 * 109.63871 * 289.39293 * 14 5 4 40 40 H 1.09004 * 111.01373 * 325.13644 * 16 15 14 41 41 H 1.09000 * 111.01717 * 88.97192 * 16 15 14 42 42 H 1.09001 * 110.35614 * 155.23019 * 17 16 15 43 43 H 1.09002 * 110.35473 * 277.41200 * 17 16 15 44 44 H 0.96999 * 120.00075 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.90381 * 242.13591 * 27 18 17 46 46 H 1.08991 * 109.91147 * 120.87699 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 1.2500 5 7 3.5033 -0.8626 1.1440 6 6 4.3130 -0.4743 2.1490 7 8 5.5193 -0.4974 2.0010 8 6 3.7341 -0.0204 3.4314 9 6 2.5973 -0.6443 3.9597 10 6 2.0952 -0.1820 5.1632 11 6 2.7264 0.8714 5.8003 12 7 3.7999 1.4364 5.2815 13 6 4.3121 1.0358 4.1362 14 6 4.0532 -1.4327 -0.0978 15 6 3.4231 -0.7173 -1.2831 16 6 3.8337 -1.4105 -2.6016 17 6 3.7407 -0.2373 -3.6106 18 7 4.2015 0.9457 -2.8602 19 6 4.7282 2.0842 -3.4093 20 1 5.0371 2.8988 -2.7709 21 6 4.8651 2.1914 -4.7865 22 7 4.4891 1.1986 -5.5645 23 14 5.5828 3.7447 -5.5357 24 1 5.9248 4.7035 -4.4545 25 1 6.8092 3.4043 -6.3008 26 1 4.5858 4.3610 -6.4474 27 6 4.0012 0.6995 -1.4229 28 8 2.0079 -0.6774 -1.1663 29 1 -0.3633 0.5122 0.8908 30 1 -0.3633 0.5155 -0.8891 31 1 -0.3633 -1.0276 -0.0019 32 1 1.5847 -1.7121 1.3139 33 1 1.7922 -0.1471 2.1399 34 1 2.1246 -1.4653 3.4411 35 1 1.2202 -0.6391 5.6011 36 1 2.3369 1.2341 6.7400 37 1 5.1894 1.5264 3.7413 38 1 5.1339 -1.2917 -0.1185 39 1 3.8184 -2.4959 -0.1482 40 1 4.8522 -1.7940 -2.5409 41 1 3.1339 -2.2053 -2.8598 42 1 4.3907 -0.4206 -4.4661 43 1 2.7106 -0.1015 -3.9402 44 1 4.5851 1.2733 -6.5268 45 1 3.3002 1.4282 -1.0158 46 1 4.9545 0.7649 -0.8987 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071123760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:55:08 Heat of formation + Delta-G solvation = 8.948252 kcal Electronic energy + Delta-G solvation = -29621.121171 eV Core-core repulsion = 25705.511514 eV Total energy + Delta-G solvation = -3915.609657 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.19204 -40.03735 -38.53775 -36.43893 -34.85391 -33.40627 -32.77100 -31.72942 -31.36207 -29.41152 -28.37211 -26.70777 -25.99742 -24.57856 -24.01075 -23.27143 -21.89201 -20.46168 -20.11022 -19.03641 -17.67671 -17.36691 -17.06531 -16.82910 -16.49747 -16.05577 -15.20514 -15.01920 -14.70433 -14.62013 -14.26270 -14.11857 -13.80808 -13.68954 -13.57038 -13.32354 -12.94036 -12.67712 -12.40704 -12.34703 -12.28651 -12.02364 -11.61673 -11.56844 -11.12737 -10.92147 -10.86491 -10.55322 -10.45577 -10.33979 -10.11979 -10.06861 -9.92513 -9.68725 -9.61813 -9.57295 -9.50282 -8.63952 -8.44936 -6.82068 -5.63950 -3.05292 0.40614 0.81597 2.52055 2.72998 3.41233 3.46200 3.46847 3.49372 3.78403 3.98084 4.26189 4.36076 4.45262 4.48955 4.57611 4.67151 4.80585 4.94571 4.97440 5.12025 5.14685 5.29333 5.32796 5.40123 5.46550 5.52134 5.56392 5.59343 5.64231 5.66135 5.82909 5.85793 5.98431 6.08314 6.16380 6.24206 6.25798 6.44373 6.52379 6.60780 6.67361 7.16759 7.54448 7.56180 7.60057 7.63653 7.86101 7.94664 8.36306 9.23347 9.83403 10.48294 11.40164 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015706 B = 0.003466 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.277503 B = 8076.272683 C = 8726.204780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.068 3.932 3 H 0.069 0.931 4 C 0.071 3.929 5 N -0.605 5.605 6 C 0.564 3.436 7 O -0.525 6.525 8 C -0.178 4.178 9 C -0.048 4.048 10 C -0.180 4.180 11 C 0.117 3.883 12 N -0.485 5.485 13 C 0.156 3.844 14 C 0.099 3.901 15 C 0.094 3.906 16 C -0.129 4.129 17 C 0.157 3.843 18 N -0.600 5.600 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.121 3.879 28 O -0.352 6.352 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.017 0.983 44 H 0.252 0.748 45 H 0.023 0.977 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 -7.168 20.020 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.009 3.991 3 H 0.087 0.913 4 C -0.052 4.052 5 N -0.338 5.338 6 C 0.352 3.648 7 O -0.401 6.401 8 C -0.183 4.183 9 C -0.074 4.074 10 C -0.200 4.200 11 C -0.040 4.040 12 N -0.193 5.193 13 C -0.002 4.002 14 C -0.023 4.023 15 C 0.053 3.947 16 C -0.168 4.168 17 C 0.033 3.967 18 N -0.326 5.326 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.206 1.206 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.005 4.005 28 O -0.271 6.271 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.178 0.822 37 H 0.184 0.816 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.125 0.875 43 H 0.035 0.965 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.460 -6.477 20.047 22.702 hybrid contribution -0.117 0.209 -0.584 0.631 sum -8.577 -6.268 19.463 22.173 Atomic orbital electron populations 1.21689 0.92342 1.02914 1.02854 1.22460 0.95333 0.96394 0.84900 0.91324 1.22860 0.80132 1.01905 1.00315 1.48081 1.06757 1.62337 1.16624 1.18092 0.86320 0.77384 0.83029 1.90823 1.13870 1.53709 1.81715 1.20992 0.98631 1.00961 0.97741 1.21930 0.92747 0.97926 0.94808 1.22125 1.02389 0.99225 0.96222 1.23042 0.90524 0.91555 0.98886 1.67820 1.11303 1.28832 1.11395 1.23004 0.97102 0.91278 0.88786 1.22247 1.01016 0.97203 0.81876 1.22239 0.80720 0.96817 0.94904 1.23012 1.00309 0.99836 0.93679 1.21939 0.98819 0.82115 0.93861 1.44498 1.73059 1.16127 0.98945 1.19113 1.33002 0.92502 0.90318 0.90575 1.24772 1.01637 0.98325 0.95859 1.69796 1.53285 1.30607 1.03318 0.85997 0.78352 0.82144 0.79023 1.20553 1.21681 1.21748 1.21728 0.97158 0.92869 0.88736 1.87874 1.20505 1.76618 1.42108 0.91258 0.91020 0.91717 0.90304 0.88736 0.83890 0.83983 0.82218 0.81609 0.87609 0.90627 0.90502 0.90979 0.87457 0.96461 0.93767 0.95936 0.95110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.57 37.16 0.36 -1.08 16 2 C 0.07 0.91 3.17 -26.58 -0.08 0.82 16 3 H 0.07 1.06 6.25 -51.93 -0.32 0.73 16 4 C 0.07 0.76 4.31 -3.53 -0.02 0.74 16 5 N -0.61 -8.24 2.95 -173.99 -0.51 -8.75 16 6 C 0.56 8.19 7.39 -12.33 -0.09 8.10 16 7 O -0.52 -9.49 16.39 5.32 0.09 -9.41 16 8 C -0.18 -2.06 5.21 -104.82 -0.55 -2.60 16 9 C -0.05 -0.40 7.54 -38.87 -0.29 -0.69 16 10 C -0.18 -1.18 10.10 -39.50 -0.40 -1.58 16 11 C 0.12 0.92 11.17 -17.47 -0.20 0.73 16 12 N -0.49 -5.36 10.35 -12.91 -0.13 -5.50 16 13 C 0.16 1.85 10.80 -17.13 -0.18 1.67 16 14 C 0.10 1.51 5.19 -4.06 -0.02 1.49 16 15 C 0.09 1.69 0.80 -89.93 -0.07 1.62 16 16 C -0.13 -2.47 6.21 -24.87 -0.15 -2.63 16 17 C 0.16 3.89 5.89 -2.44 -0.01 3.88 16 18 N -0.60 -15.85 3.40 -170.24 -0.58 -16.43 16 19 C -0.22 -6.34 10.28 -15.06 -0.15 -6.49 16 20 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 21 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 22 N -0.92 -27.10 10.09 55.49 0.56 -26.54 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C 0.12 2.68 6.34 -3.32 -0.02 2.65 16 28 O -0.35 -6.05 9.90 -35.23 -0.35 -6.40 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 33 H 0.09 0.83 4.83 -51.94 -0.25 0.58 16 34 H 0.14 0.92 6.40 -52.48 -0.34 0.59 16 35 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.17 1.97 8.04 -52.49 -0.42 1.55 16 38 H 0.11 1.80 6.78 -51.93 -0.35 1.44 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 1.39 8.01 -51.93 -0.42 0.98 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.11 2.95 5.88 -51.93 -0.31 2.64 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.51 6.03 -51.93 -0.31 0.20 16 46 H 0.03 0.71 7.59 -51.93 -0.39 0.32 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -34.37 362.35 -8.94 -43.31 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.46 Total: 0.57 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.99 Total: 6.24 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.67 Total: -57.22 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.26 Total: -15.81 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.37 -8.94 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071123760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.260 kcal (2) G-P(sol) polarization free energy of solvation -34.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds