Wall clock time and date at job start Sat Apr 11 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51132 * 2 1 4 4 C 1.53280 * 109.51130 * 239.90487 * 2 1 3 5 5 N 1.47158 * 108.56094 * 187.03623 * 4 2 1 6 6 C 1.34780 * 121.07810 * 231.25269 * 5 4 2 7 7 O 1.21559 * 119.99461 * 356.21874 * 6 5 4 8 8 C 1.47831 * 120.00383 * 176.22509 * 6 5 4 9 9 C 1.40032 * 120.55864 * 227.79487 * 8 6 5 10 10 C 1.38354 * 118.29034 * 180.02562 * 9 8 6 11 11 C 1.38354 * 119.30284 * 359.97438 * 10 9 8 12 12 N 1.31928 * 121.07876 * 359.97438 * 11 10 9 13 13 C 1.31693 * 121.88116 * 359.74017 * 12 11 10 14 14 C 1.47342 * 117.85225 * 51.22427 * 5 4 2 15 15 C 1.52365 * 108.39589 * 310.80766 * 14 5 4 16 16 C 1.54374 * 110.38167 * 286.62029 * 15 14 5 17 17 C 1.54468 * 102.86169 * 207.58253 * 16 15 14 18 18 N 1.47088 * 107.29681 * 21.50596 * 17 16 15 19 19 C 1.36939 * 125.62676 * 180.97610 * 18 17 16 20 20 H 1.08001 * 119.99530 * 180.02562 * 19 18 17 21 21 C 1.38807 * 119.99931 * 0.02575 * 19 18 17 22 22 N 1.31615 * 120.00385 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99865 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46955 * 270.00007 * 23 21 19 25 25 H 1.48496 * 109.47245 * 29.99595 * 23 21 19 26 26 H 1.48493 * 109.47273 * 149.99819 * 23 21 19 27 27 C 1.47577 * 108.74307 * 1.23679 * 18 17 16 28 28 O 1.41886 * 111.44299 * 50.09468 * 15 14 5 29 29 H 1.09001 * 109.47115 * 180.09206 * 1 2 3 30 30 H 1.08999 * 109.47431 * 300.09562 * 1 2 3 31 31 H 1.09000 * 109.47402 * 60.09667 * 1 2 3 32 32 H 1.08998 * 109.62180 * 67.30917 * 4 2 1 33 33 H 1.09008 * 109.77667 * 306.84967 * 4 2 1 34 34 H 1.07998 * 120.85354 * 359.97101 * 9 8 6 35 35 H 1.08004 * 120.35005 * 180.02562 * 10 9 8 36 36 H 1.07994 * 119.46208 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.71990 * 180.26852 * 13 12 11 38 38 H 1.08999 * 109.67928 * 191.07819 * 14 5 4 39 39 H 1.08999 * 109.67278 * 70.53384 * 14 5 4 40 40 H 1.09002 * 110.73117 * 89.24767 * 16 15 14 41 41 H 1.08996 * 110.73970 * 325.92820 * 16 15 14 42 42 H 1.08994 * 109.87975 * 262.08246 * 17 16 15 43 43 H 1.09002 * 109.87695 * 140.92408 * 17 16 15 44 44 H 0.96999 * 120.00233 * 180.02562 * 22 21 19 45 45 H 1.09009 * 110.37474 * 95.26192 * 27 18 17 46 46 H 1.09000 * 110.37933 * 217.61045 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2500 5 7 3.5034 -0.8618 -1.1462 6 6 4.3119 -0.4728 -2.1520 7 8 3.8342 -0.0637 -3.1922 8 6 5.7797 -0.5438 -1.9902 9 6 6.5876 0.5463 -2.3362 10 6 7.9556 0.4287 -2.1662 11 6 8.4766 -0.7506 -1.6641 12 7 7.6907 -1.7612 -1.3455 13 6 6.3827 -1.6957 -1.4840 14 6 4.0544 -1.4378 0.0929 15 6 3.4227 -0.7200 1.2792 16 6 4.0033 0.7037 1.4175 17 6 3.8584 0.9888 2.9287 18 7 3.7531 -0.3102 3.6107 19 6 3.5926 -0.4929 4.9583 20 1 3.5259 -1.4918 5.3636 21 6 3.5156 0.6056 5.8033 22 7 3.5975 1.8229 5.3095 23 14 3.2974 0.3564 7.6417 24 1 1.8491 0.3171 7.9674 25 1 3.9305 -0.9245 8.0462 26 1 3.9390 1.4783 8.3730 27 6 3.8552 -1.3841 2.6037 28 8 2.0089 -0.6770 1.1665 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3634 0.5153 0.8891 31 1 -0.3634 0.5123 -0.8908 32 1 1.7909 -0.1443 -2.1379 33 1 1.5853 -1.7120 -1.3170 34 1 6.1541 1.4552 -2.7266 35 1 8.6099 1.2490 -2.4219 36 1 9.5440 -0.8451 -1.5299 37 1 5.7720 -2.5426 -1.2082 38 1 5.1354 -1.2992 0.1132 39 1 3.8193 -2.5011 0.1396 40 1 3.4213 1.4162 0.8329 41 1 5.0516 0.7236 1.1198 42 1 2.9588 1.5767 3.1104 43 1 4.7347 1.5270 3.2900 44 1 3.5441 2.5905 5.9000 45 1 4.8823 -1.7426 2.5340 46 1 3.1822 -2.2043 2.8538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071123761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:55:11 Heat of formation + Delta-G solvation = 6.928644 kcal Electronic energy + Delta-G solvation = -29871.132354 eV Core-core repulsion = 25955.435121 eV Total energy + Delta-G solvation = -3915.697234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.16919 -39.93885 -38.62659 -36.29765 -34.91958 -33.17851 -32.76216 -31.84864 -31.22756 -29.36311 -28.55442 -26.92264 -25.76518 -24.30833 -23.86386 -23.51797 -21.83836 -20.35044 -20.12725 -19.10005 -17.76360 -17.38000 -17.05900 -16.85316 -16.31181 -16.05240 -15.18707 -15.05680 -14.71419 -14.45716 -14.27644 -14.01487 -13.81097 -13.64137 -13.43733 -13.36942 -12.96774 -12.62761 -12.40637 -12.25016 -12.12245 -12.01774 -11.87486 -11.62330 -11.02995 -10.93497 -10.87658 -10.61394 -10.29636 -10.26791 -10.16458 -10.12033 -10.00811 -9.74066 -9.63864 -9.57370 -9.34575 -8.59361 -8.47410 -6.84057 -5.70558 -3.03915 0.51911 0.94971 2.44480 2.72368 3.41288 3.46060 3.47867 3.51526 3.82294 4.02409 4.26102 4.48125 4.54039 4.58462 4.69877 4.76653 4.86264 4.99605 5.03576 5.12527 5.16869 5.30297 5.35917 5.42944 5.48317 5.56306 5.58692 5.66389 5.72765 5.74024 5.78079 5.84280 6.01616 6.04783 6.12816 6.26581 6.31169 6.38573 6.42747 6.48327 6.58475 7.13600 7.53485 7.59857 7.60161 7.63371 7.82149 7.89226 8.24583 9.21591 9.81648 10.46573 11.41459 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.004127 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.597633 B = 6782.730338 C = 8227.048177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.069 3.931 3 H 0.065 0.935 4 C 0.085 3.915 5 N -0.601 5.601 6 C 0.569 3.431 7 O -0.537 6.537 8 C -0.178 4.178 9 C -0.025 4.025 10 C -0.175 4.175 11 C 0.117 3.883 12 N -0.482 5.482 13 C 0.131 3.869 14 C 0.081 3.919 15 C 0.093 3.907 16 C -0.166 4.166 17 C 0.186 3.814 18 N -0.598 5.598 19 C -0.225 4.225 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.923 5.923 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.281 1.281 26 H -0.291 1.291 27 C 0.153 3.847 28 O -0.342 6.342 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.042 0.958 44 H 0.252 0.748 45 H 0.036 0.964 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.650 -3.999 -16.543 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.011 3.989 3 H 0.083 0.917 4 C -0.037 4.037 5 N -0.334 5.334 6 C 0.357 3.643 7 O -0.415 6.415 8 C -0.183 4.183 9 C -0.051 4.051 10 C -0.194 4.194 11 C -0.040 4.040 12 N -0.191 5.191 13 C -0.027 4.027 14 C -0.042 4.042 15 C 0.052 3.948 16 C -0.204 4.204 17 C 0.062 3.938 18 N -0.324 5.324 19 C -0.354 4.354 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.571 5.571 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.207 1.207 26 H -0.217 1.217 27 C 0.026 3.974 28 O -0.261 6.261 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.179 0.821 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.627 -4.492 -16.428 17.413 hybrid contribution -0.289 0.926 0.494 1.088 sum 3.337 -3.566 -15.934 16.666 Atomic orbital electron populations 1.21677 0.92275 1.03030 1.02793 1.22470 0.95495 0.96061 0.84893 0.91683 1.22431 0.78907 1.02194 1.00199 1.48102 1.07020 1.61740 1.16510 1.18095 0.85831 0.77242 0.83179 1.90779 1.76436 1.47110 1.27144 1.20901 0.94454 0.97726 1.05248 1.21617 0.93217 0.97537 0.92731 1.22146 0.95526 0.99993 1.01774 1.23012 1.00396 0.88425 0.92123 1.67742 1.04985 1.30375 1.15968 1.23080 0.91225 0.96255 0.92189 1.22656 0.99924 0.98313 0.83349 1.22413 0.81420 0.96338 0.94658 1.23368 0.99520 0.95900 1.01655 1.21093 1.00844 0.87900 0.83981 1.44404 1.85858 0.99943 1.02235 1.19048 1.42833 0.92934 0.80539 0.90330 1.24780 1.02176 0.95245 0.98152 1.69958 1.56849 0.96939 1.33314 0.86113 0.77722 0.76969 0.84930 1.21610 1.20660 1.21738 1.21389 0.97418 0.92689 0.85942 1.87926 1.19734 1.76550 1.41855 0.91710 0.91011 0.91194 0.88323 0.90424 0.84045 0.83901 0.82117 0.82058 0.88366 0.90017 0.91891 0.92143 0.93415 0.93970 0.93802 0.94610 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.57 37.16 0.36 -1.30 16 2 C 0.07 0.99 3.19 -26.59 -0.08 0.90 16 3 H 0.07 1.00 6.22 -51.93 -0.32 0.67 16 4 C 0.08 1.08 5.89 -3.54 -0.02 1.06 16 5 N -0.60 -8.05 2.95 -173.80 -0.51 -8.56 16 6 C 0.57 7.98 7.31 -12.33 -0.09 7.89 16 7 O -0.54 -8.87 16.52 5.31 0.09 -8.78 16 8 C -0.18 -2.20 5.10 -104.82 -0.53 -2.73 16 9 C -0.02 -0.27 9.88 -38.87 -0.38 -0.65 16 10 C -0.17 -1.53 10.10 -39.50 -0.40 -1.93 16 11 C 0.12 1.11 11.17 -17.47 -0.20 0.91 16 12 N -0.48 -5.67 10.35 -12.91 -0.13 -5.80 16 13 C 0.13 1.51 8.56 -17.13 -0.15 1.37 16 14 C 0.08 1.08 4.01 -3.91 -0.02 1.07 16 15 C 0.09 1.60 0.84 -89.52 -0.08 1.53 16 16 C -0.17 -3.11 5.86 -25.24 -0.15 -3.26 16 17 C 0.19 4.54 5.38 -2.95 -0.02 4.52 16 18 N -0.60 -15.13 3.40 -170.16 -0.58 -15.71 16 19 C -0.23 -6.25 10.28 -15.06 -0.15 -6.40 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 21 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -27.14 10.31 55.49 0.57 -26.57 16 23 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C 0.15 3.06 6.43 -2.75 -0.02 3.04 16 28 O -0.34 -6.10 9.94 -35.22 -0.35 -6.45 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.10 1.24 7.10 -51.93 -0.37 0.87 16 33 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.16 1.63 6.81 -52.49 -0.36 1.27 16 38 H 0.10 1.27 4.48 -51.93 -0.23 1.04 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 1.14 6.07 -51.93 -0.32 0.82 16 41 H 0.06 1.07 7.83 -51.93 -0.41 0.66 16 42 H 0.05 1.31 7.38 -51.93 -0.38 0.93 16 43 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.04 0.68 8.00 -51.92 -0.42 0.26 16 46 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -33.63 363.98 -9.02 -42.65 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.54 Total: 0.95 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: -2.02 Total: 5.71 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.65 Total: -56.64 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.26 Total: -15.23 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.63 -9.02 -42.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071123761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.578 kcal (2) G-P(sol) polarization free energy of solvation -33.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds