Wall clock time and date at job start Sat Apr 11 2020 02:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.51132 * 2 1 4 4 C 1.53280 * 109.51130 * 239.90487 * 2 1 3 5 5 N 1.47158 * 108.56094 * 187.03623 * 4 2 1 6 6 C 1.34780 * 121.07810 * 231.25269 * 5 4 2 7 7 O 1.21559 * 119.99461 * 356.21874 * 6 5 4 8 8 C 1.47831 * 120.00383 * 176.22509 * 6 5 4 9 9 C 1.40032 * 120.55864 * 227.79487 * 8 6 5 10 10 C 1.38354 * 118.29034 * 180.02562 * 9 8 6 11 11 C 1.38354 * 119.30284 * 359.97438 * 10 9 8 12 12 N 1.31928 * 121.07876 * 359.97438 * 11 10 9 13 13 C 1.31693 * 121.88116 * 359.74017 * 12 11 10 14 14 C 1.47342 * 117.85225 * 51.22427 * 5 4 2 15 15 C 1.52365 * 108.39589 * 310.80766 * 14 5 4 16 16 C 1.54374 * 110.38167 * 286.62029 * 15 14 5 17 17 C 1.54468 * 102.86169 * 207.58253 * 16 15 14 18 18 N 1.47088 * 107.29681 * 21.50596 * 17 16 15 19 19 C 1.36939 * 125.62676 * 180.97610 * 18 17 16 20 20 H 1.08001 * 119.99530 * 180.02562 * 19 18 17 21 21 C 1.38807 * 119.99931 * 0.02575 * 19 18 17 22 22 N 1.31615 * 120.00385 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99865 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.46955 * 270.00007 * 23 21 19 25 25 H 1.48496 * 109.47245 * 29.99595 * 23 21 19 26 26 H 1.48493 * 109.47273 * 149.99819 * 23 21 19 27 27 C 1.47577 * 108.74307 * 1.23679 * 18 17 16 28 28 O 1.41886 * 111.44299 * 50.09468 * 15 14 5 29 29 H 1.09001 * 109.47115 * 180.09206 * 1 2 3 30 30 H 1.08999 * 109.47431 * 300.09562 * 1 2 3 31 31 H 1.09000 * 109.47402 * 60.09667 * 1 2 3 32 32 H 1.08998 * 109.62180 * 67.30917 * 4 2 1 33 33 H 1.09008 * 109.77667 * 306.84967 * 4 2 1 34 34 H 1.07998 * 120.85354 * 359.97101 * 9 8 6 35 35 H 1.08004 * 120.35005 * 180.02562 * 10 9 8 36 36 H 1.07994 * 119.46208 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.71990 * 180.26852 * 13 12 11 38 38 H 1.08999 * 109.67928 * 191.07819 * 14 5 4 39 39 H 1.08999 * 109.67278 * 70.53384 * 14 5 4 40 40 H 1.09002 * 110.73117 * 89.24767 * 16 15 14 41 41 H 1.08996 * 110.73970 * 325.92820 * 16 15 14 42 42 H 1.08994 * 109.87975 * 262.08246 * 17 16 15 43 43 H 1.09002 * 109.87695 * 140.92408 * 17 16 15 44 44 H 0.96999 * 120.00233 * 180.02562 * 22 21 19 45 45 H 1.09009 * 110.37474 * 95.26192 * 27 18 17 46 46 H 1.09000 * 110.37933 * 217.61045 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0419 -0.7245 -1.2500 5 7 3.5034 -0.8618 -1.1462 6 6 4.3119 -0.4728 -2.1520 7 8 3.8342 -0.0637 -3.1922 8 6 5.7797 -0.5438 -1.9902 9 6 6.5876 0.5463 -2.3362 10 6 7.9556 0.4287 -2.1662 11 6 8.4766 -0.7506 -1.6641 12 7 7.6907 -1.7612 -1.3455 13 6 6.3827 -1.6957 -1.4840 14 6 4.0544 -1.4378 0.0929 15 6 3.4227 -0.7200 1.2792 16 6 4.0033 0.7037 1.4175 17 6 3.8584 0.9888 2.9287 18 7 3.7531 -0.3102 3.6107 19 6 3.5926 -0.4929 4.9583 20 1 3.5259 -1.4918 5.3636 21 6 3.5156 0.6056 5.8033 22 7 3.5975 1.8229 5.3095 23 14 3.2974 0.3564 7.6417 24 1 1.8491 0.3171 7.9674 25 1 3.9305 -0.9245 8.0462 26 1 3.9390 1.4783 8.3730 27 6 3.8552 -1.3841 2.6037 28 8 2.0089 -0.6770 1.1665 29 1 -0.3633 -1.0277 0.0017 30 1 -0.3634 0.5153 0.8891 31 1 -0.3634 0.5123 -0.8908 32 1 1.7909 -0.1443 -2.1379 33 1 1.5853 -1.7120 -1.3170 34 1 6.1541 1.4552 -2.7266 35 1 8.6099 1.2490 -2.4219 36 1 9.5440 -0.8451 -1.5299 37 1 5.7720 -2.5426 -1.2082 38 1 5.1354 -1.2992 0.1132 39 1 3.8193 -2.5011 0.1396 40 1 3.4213 1.4162 0.8329 41 1 5.0516 0.7236 1.1198 42 1 2.9588 1.5767 3.1104 43 1 4.7347 1.5270 3.2900 44 1 3.5441 2.5905 5.9000 45 1 4.8823 -1.7426 2.5340 46 1 3.1822 -2.2043 2.8538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071123761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:55:10 Heat of formation + Delta-G solvation = -15.581246 kcal Electronic energy + Delta-G solvation = -29872.108457 eV Core-core repulsion = 25955.435121 eV Total energy + Delta-G solvation = -3916.673336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.22099 -40.98368 -39.78705 -37.88739 -36.07147 -34.78892 -33.61719 -33.14050 -32.35010 -31.09981 -30.03065 -27.94162 -27.36698 -25.73305 -24.83488 -24.54720 -23.11433 -22.04262 -21.34453 -20.37043 -18.96101 -18.78893 -18.31253 -17.80865 -17.28029 -17.25827 -16.76940 -16.34655 -16.12169 -15.68999 -15.64573 -15.15727 -15.09985 -14.81857 -14.70756 -14.19153 -14.16416 -14.04335 -13.83621 -13.56678 -13.20959 -13.17486 -13.04599 -12.98590 -12.81225 -12.77681 -12.28871 -12.08742 -12.01207 -11.86332 -11.78596 -11.65431 -11.21745 -11.00346 -10.93763 -10.70060 -10.49629 -10.15649 -9.63796 -8.90132 -7.84070 -5.19271 -0.29037 0.17854 1.41001 1.46754 1.48852 1.57282 1.70782 2.49633 2.56670 2.73561 3.12253 3.33688 3.40001 3.49671 3.59474 3.73176 3.79472 3.81505 3.88946 3.94889 3.99245 4.06304 4.15927 4.25581 4.36603 4.42973 4.49114 4.51830 4.66232 4.68264 4.71890 4.78187 4.82433 4.92711 4.94987 5.02898 5.04640 5.06767 5.14362 5.29491 5.44467 5.57161 5.57981 5.71215 6.07368 6.18108 6.34836 6.79822 6.87115 7.09737 7.76721 8.40837 9.26965 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.012561 B = 0.004127 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.597633 B = 6782.730338 C = 8227.048177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.067 3.933 3 H 0.048 0.952 4 C 0.090 3.910 5 N -0.601 5.601 6 C 0.572 3.428 7 O -0.567 6.567 8 C -0.197 4.197 9 C -0.037 4.037 10 C -0.165 4.165 11 C 0.114 3.886 12 N -0.504 5.504 13 C 0.125 3.875 14 C 0.093 3.907 15 C 0.104 3.896 16 C -0.149 4.149 17 C 0.199 3.801 18 N -0.620 5.620 19 C -0.237 4.237 20 H 0.086 0.914 21 C -0.067 4.067 22 N -0.955 5.955 23 Si 0.978 3.022 24 H -0.288 1.288 25 H -0.265 1.265 26 H -0.296 1.296 27 C 0.146 3.854 28 O -0.368 6.368 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.145 0.855 35 H 0.176 0.824 36 H 0.192 0.808 37 H 0.173 0.827 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.003 0.997 43 H 0.006 0.994 44 H 0.245 0.755 45 H 0.057 0.943 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.582 -5.514 -17.740 19.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.009 3.991 3 H 0.066 0.934 4 C -0.032 4.032 5 N -0.332 5.332 6 C 0.361 3.639 7 O -0.446 6.446 8 C -0.203 4.203 9 C -0.064 4.064 10 C -0.184 4.184 11 C -0.042 4.042 12 N -0.212 5.212 13 C -0.033 4.033 14 C -0.030 4.030 15 C 0.062 3.938 16 C -0.188 4.188 17 C 0.073 3.927 18 N -0.346 5.346 19 C -0.366 4.366 20 H 0.104 0.896 21 C -0.260 4.260 22 N -0.604 5.604 23 Si 0.806 3.194 24 H -0.215 1.215 25 H -0.190 1.190 26 H -0.222 1.222 27 C 0.021 3.979 28 O -0.287 6.287 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.163 0.837 35 H 0.193 0.807 36 H 0.209 0.791 37 H 0.190 0.810 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.022 0.978 43 H 0.025 0.975 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.559 -6.051 -17.643 19.200 hybrid contribution -0.547 1.416 0.836 1.733 sum 4.012 -4.635 -16.807 17.890 Atomic orbital electron populations 1.21690 0.90480 1.03871 1.03230 1.22646 0.96915 0.95065 0.84512 0.93368 1.22428 0.78666 1.03003 0.99120 1.48128 1.07309 1.61519 1.16265 1.18337 0.86558 0.76329 0.82679 1.90759 1.77123 1.48495 1.28266 1.20868 0.93474 0.98864 1.07053 1.21860 0.94225 0.97441 0.92845 1.22494 0.94981 1.00702 1.00271 1.23609 1.01703 0.88004 0.90887 1.67789 1.05119 1.31504 1.16811 1.23220 0.91520 0.96314 0.92204 1.22550 0.99970 0.98982 0.81523 1.22228 0.81694 0.94841 0.94995 1.23171 1.00731 0.97560 0.97320 1.20737 0.97078 0.87255 0.87583 1.44680 1.85736 1.01608 1.02584 1.19483 1.41722 0.93269 0.82116 0.89584 1.25635 1.02728 0.95065 1.02533 1.70193 1.58309 0.97537 1.34377 0.85079 0.77410 0.77180 0.79693 1.21545 1.18984 1.22222 1.21619 0.98591 0.91583 0.86110 1.87890 1.19908 1.77020 1.43892 0.90630 0.92845 0.88478 0.87977 0.88563 0.83686 0.80668 0.79123 0.81048 0.87482 0.87470 0.91509 0.90652 0.97825 0.97547 0.94568 0.92529 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.57 71.98 0.69 -2.35 16 2 C 0.07 1.84 3.19 30.69 0.10 1.94 16 3 H 0.05 1.48 6.22 -2.39 -0.01 1.47 16 4 C 0.09 2.10 5.89 86.35 0.51 2.61 16 5 N -0.60 -14.91 2.95 -822.06 -2.42 -17.34 16 6 C 0.57 15.20 7.31 86.78 0.63 15.84 16 7 O -0.57 -18.14 16.52 -3.90 -0.06 -18.21 16 8 C -0.20 -4.54 5.10 -19.99 -0.10 -4.64 16 9 C -0.04 -0.74 9.88 22.73 0.22 -0.51 16 10 C -0.17 -2.42 10.10 22.33 0.23 -2.20 16 11 C 0.11 1.82 11.17 84.71 0.95 2.77 16 12 N -0.50 -10.65 10.35 -194.76 -2.01 -12.66 16 13 C 0.13 2.64 8.56 85.02 0.73 3.37 16 14 C 0.09 2.27 4.01 86.01 0.35 2.62 16 15 C 0.10 3.46 0.84 -10.08 -0.01 3.45 16 16 C -0.15 -5.62 5.86 31.56 0.19 -5.43 16 17 C 0.20 10.07 5.38 86.77 0.47 10.54 16 18 N -0.62 -31.90 3.40 -692.25 -2.35 -34.25 16 19 C -0.24 -13.33 10.28 84.03 0.86 -12.46 16 20 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 21 C -0.07 -3.86 5.49 84.86 0.47 -3.39 16 22 N -0.95 -58.49 10.31 21.65 0.22 -58.27 16 23 Si 0.98 46.14 29.55 68.60 2.03 48.16 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 C 0.15 5.74 6.43 86.63 0.56 6.30 16 28 O -0.37 -12.88 9.94 -148.95 -1.48 -14.36 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.10 2.37 7.10 -2.39 -0.02 2.36 16 33 H 0.10 1.93 8.14 -2.38 -0.02 1.92 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 36 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.17 3.06 6.81 -2.91 -0.02 3.04 16 38 H 0.11 2.50 4.48 -2.39 -0.01 2.49 16 39 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 2.46 6.07 -2.39 -0.01 2.44 16 41 H 0.07 2.60 7.83 -2.39 -0.02 2.58 16 42 H 0.00 0.20 7.38 -2.39 -0.02 0.19 16 43 H 0.01 0.36 7.50 -2.39 -0.02 0.34 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.06 2.02 8.00 -2.38 -0.02 2.00 16 46 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -75.66 363.98 1.73 -73.93 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.99 Total: 14.54 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 6.83 Total: 18.45 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -6.57 Total: -122.52 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -1.55 Total: -32.57 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -75.66 1.73 -73.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071123761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.345 kcal (2) G-P(sol) polarization free energy of solvation -75.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds