Wall clock time and date at job start Sat Apr 11 2020 02:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.51245 * 2 1 4 4 C 1.53278 * 109.51139 * 239.89696 * 2 1 3 5 5 N 1.47170 * 108.55332 * 186.99619 * 4 2 1 6 6 C 1.34783 * 121.07681 * 231.23683 * 5 4 2 7 7 O 1.21553 * 120.00288 * 356.20995 * 6 5 4 8 8 C 1.47839 * 119.99622 * 176.48089 * 6 5 4 9 9 C 1.40020 * 120.56101 * 213.03655 * 8 6 5 10 10 C 1.38361 * 118.28892 * 180.02562 * 9 8 6 11 11 C 1.38351 * 119.30270 * 359.97438 * 10 9 8 12 12 N 1.31921 * 121.08091 * 0.02740 * 11 10 9 13 13 C 1.31702 * 121.87831 * 359.65179 * 12 11 10 14 14 C 1.47330 * 117.84204 * 51.51090 * 5 4 2 15 15 C 1.52772 * 108.21149 * 310.53166 * 14 5 4 16 16 C 1.54363 * 110.33817 * 173.65211 * 15 14 5 17 17 C 1.54463 * 102.87315 * 152.53448 * 16 15 14 18 18 N 1.47087 * 107.29456 * 338.50547 * 17 16 15 19 19 C 1.36936 * 125.62838 * 178.98984 * 18 17 16 20 20 H 1.08000 * 119.99962 * 186.11904 * 19 18 17 21 21 C 1.38813 * 119.99969 * 6.10854 * 19 18 17 22 22 N 1.31620 * 120.00475 * 353.16902 * 21 19 18 23 23 Si 1.86805 * 120.00051 * 173.16262 * 21 19 18 24 24 H 1.48504 * 109.47058 * 94.98658 * 23 21 19 25 25 H 1.48492 * 109.47556 * 214.98946 * 23 21 19 26 26 H 1.48503 * 109.46855 * 334.98936 * 23 21 19 27 27 C 1.47567 * 108.73784 * 359.00567 * 18 17 16 28 28 O 1.41888 * 111.39239 * 50.23567 * 15 14 5 29 29 H 1.09002 * 109.47667 * 180.09770 * 1 2 3 30 30 H 1.08995 * 109.47341 * 300.10314 * 1 2 3 31 31 H 1.09004 * 109.46786 * 60.09939 * 1 2 3 32 32 H 1.09007 * 109.62679 * 67.28079 * 4 2 1 33 33 H 1.08997 * 109.78192 * 306.80706 * 4 2 1 34 34 H 1.08000 * 120.85800 * 359.97438 * 9 8 6 35 35 H 1.08005 * 120.34661 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.45723 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.71599 * 180.31276 * 13 12 11 38 38 H 1.08998 * 109.64053 * 70.27952 * 14 5 4 39 39 H 1.08998 * 109.64565 * 190.91429 * 14 5 4 40 40 H 1.08992 * 110.73747 * 270.88417 * 16 15 14 41 41 H 1.09005 * 110.72742 * 34.19220 * 16 15 14 42 42 H 1.08992 * 109.87937 * 97.93150 * 17 16 15 43 43 H 1.09002 * 109.87742 * 218.93304 * 17 16 15 44 44 H 0.96997 * 120.00253 * 180.02562 * 22 21 19 45 45 H 1.08997 * 110.37628 * 264.48693 * 27 18 17 46 46 H 1.09007 * 110.37008 * 142.14683 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0419 -0.7246 -1.2499 5 7 3.5036 -0.8610 -1.1464 6 6 4.3117 -0.4722 -2.1526 7 8 3.8336 -0.0642 -3.1930 8 6 5.7795 -0.5476 -1.9930 9 6 6.6120 0.3943 -2.6099 10 6 7.9790 0.2790 -2.4295 11 6 8.4748 -0.7529 -1.6526 12 7 7.6662 -1.6260 -1.0834 13 6 6.3582 -1.5548 -1.2202 14 6 4.0546 -1.4421 0.0903 15 6 3.4226 -0.7209 1.2796 16 6 3.8443 -1.3959 2.6022 17 6 3.7652 -0.2371 3.6204 18 7 3.8528 1.0193 2.8607 19 6 3.8005 2.2794 3.3942 20 1 3.7744 3.1407 2.7432 21 6 3.7809 2.4496 4.7717 22 7 3.6767 1.4029 5.5628 23 14 3.9024 4.1644 5.5027 24 1 2.5382 4.6844 5.7746 25 1 4.6726 4.1084 6.7710 26 1 4.5928 5.0636 4.5435 27 6 4.0060 0.6976 1.4287 28 8 2.0089 -0.6770 1.1665 29 1 -0.3634 -1.0276 0.0018 30 1 -0.3634 0.5154 0.8890 31 1 -0.3633 0.5123 -0.8909 32 1 1.7905 -0.1448 -2.1381 33 1 1.5859 -1.7124 -1.3164 34 1 6.1979 1.1898 -3.2116 35 1 8.6518 0.9870 -2.8904 36 1 9.5414 -0.8450 -1.5099 37 1 5.7285 -2.2855 -0.7345 38 1 3.8162 -2.5049 0.1336 39 1 5.1357 -1.3049 0.1097 40 1 3.1486 -2.1916 2.8684 41 1 4.8623 -1.7793 2.5322 42 1 2.8180 -0.2800 4.1579 43 1 4.5943 -0.3055 4.3248 44 1 3.6626 1.5219 6.5253 45 1 5.0593 0.7062 1.1483 46 1 3.4443 1.4052 0.8186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071123762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:55:14 Heat of formation + Delta-G solvation = 21.315862 kcal Electronic energy + Delta-G solvation = -30036.548049 eV Core-core repulsion = 26121.474692 eV Total energy + Delta-G solvation = -3915.073357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23207 -39.87451 -38.59722 -36.26289 -35.01101 -33.24583 -32.72640 -31.86361 -31.18176 -29.46459 -28.34479 -26.88274 -25.96221 -24.32444 -23.90587 -23.45046 -21.80132 -20.40597 -20.03273 -19.17929 -17.77654 -17.42986 -16.96767 -16.82382 -16.17812 -16.04697 -15.21990 -14.98021 -14.76285 -14.57733 -14.18100 -14.01237 -13.71820 -13.64591 -13.47211 -13.35282 -12.94879 -12.66750 -12.35177 -12.20639 -12.08197 -11.86022 -11.70579 -11.57351 -11.04374 -10.91279 -10.86496 -10.60588 -10.37071 -10.29537 -10.13508 -10.10794 -9.91914 -9.70318 -9.62956 -9.58399 -9.31246 -8.57359 -8.43730 -6.82923 -5.73064 -3.05141 0.49512 0.97619 2.56065 2.75619 3.39094 3.44631 3.46572 3.56987 3.85944 4.04681 4.26841 4.46502 4.56327 4.61877 4.70971 4.78323 4.86439 5.01329 5.06200 5.16912 5.18514 5.32501 5.36119 5.43681 5.49649 5.51200 5.60540 5.68049 5.75855 5.76407 5.81656 5.83412 6.07380 6.12440 6.14474 6.28793 6.33457 6.36981 6.42661 6.50860 6.58262 7.17077 7.54573 7.58675 7.62331 7.66963 7.82196 7.93783 8.24501 9.20563 9.80452 10.46476 11.39103 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.004556 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.946738 B = 6144.463110 C = 7414.325510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.068 0.932 4 C 0.086 3.914 5 N -0.602 5.602 6 C 0.569 3.431 7 O -0.538 6.538 8 C -0.181 4.181 9 C -0.019 4.019 10 C -0.177 4.177 11 C 0.119 3.881 12 N -0.484 5.484 13 C 0.118 3.882 14 C 0.062 3.938 15 C 0.092 3.908 16 C -0.131 4.131 17 C 0.182 3.818 18 N -0.596 5.596 19 C -0.229 4.229 20 H 0.075 0.925 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.281 1.281 27 C 0.122 3.878 28 O -0.346 6.346 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.162 0.838 37 H 0.176 0.824 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.048 0.952 44 H 0.252 0.748 45 H 0.020 0.980 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.296 -7.372 -15.211 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.086 0.914 4 C -0.037 4.037 5 N -0.335 5.335 6 C 0.357 3.643 7 O -0.416 6.416 8 C -0.186 4.186 9 C -0.046 4.046 10 C -0.197 4.197 11 C -0.038 4.038 12 N -0.192 5.192 13 C -0.040 4.040 14 C -0.061 4.061 15 C 0.051 3.949 16 C -0.169 4.169 17 C 0.057 3.943 18 N -0.323 5.323 19 C -0.357 4.357 20 H 0.093 0.907 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.207 1.207 27 C -0.005 4.005 28 O -0.265 6.265 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.179 0.821 37 H 0.192 0.808 38 H 0.102 0.898 39 H 0.131 0.869 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.264 -7.804 -14.900 17.134 hybrid contribution -0.119 1.751 -0.168 1.763 sum 3.145 -6.053 -15.068 16.540 Atomic orbital electron populations 1.21671 0.92318 1.02840 1.02867 1.22457 0.95422 0.96272 0.84601 0.91413 1.22431 0.78866 1.02086 1.00283 1.48063 1.07073 1.61744 1.16573 1.18059 0.85838 0.77265 0.83160 1.90764 1.76460 1.47257 1.27136 1.20908 0.94391 1.00260 1.03070 1.21660 0.92959 0.96184 0.93766 1.22157 0.95700 1.00546 1.01305 1.23033 1.00325 0.89400 0.90993 1.67784 1.04353 1.26355 1.20702 1.23594 0.91627 0.96276 0.92464 1.23303 1.00986 0.98164 0.83614 1.22414 0.81630 0.96928 0.93964 1.22864 1.00162 1.00083 0.93816 1.21172 1.01237 0.81262 0.90630 1.44387 1.85854 1.02526 0.99490 1.18996 1.44027 0.82527 0.90147 0.90737 1.24785 1.02044 0.97359 0.95897 1.69965 1.56212 1.27415 1.02931 0.86150 0.77595 0.83649 0.78688 1.21650 1.21563 1.20709 1.21878 0.96695 0.93027 0.88850 1.87850 1.19743 1.76583 1.42284 0.91833 0.91003 0.91187 0.88275 0.90513 0.83833 0.83920 0.82123 0.80791 0.89803 0.86864 0.90688 0.90814 0.93480 0.93423 0.93721 0.96268 0.94280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.57 37.16 0.36 -1.35 16 2 C 0.07 1.06 3.20 -26.59 -0.08 0.98 16 3 H 0.07 1.15 6.26 -51.93 -0.33 0.83 16 4 C 0.09 1.12 5.89 -3.53 -0.02 1.10 16 5 N -0.60 -8.36 2.95 -173.56 -0.51 -8.87 16 6 C 0.57 8.33 7.48 -12.33 -0.09 8.24 16 7 O -0.54 -9.12 16.33 5.32 0.09 -9.03 16 8 C -0.18 -2.35 5.55 -104.82 -0.58 -2.93 16 9 C -0.02 -0.22 9.75 -38.87 -0.38 -0.60 16 10 C -0.18 -1.64 10.10 -39.49 -0.40 -2.04 16 11 C 0.12 1.18 11.17 -17.47 -0.20 0.98 16 12 N -0.48 -5.90 10.35 -12.91 -0.13 -6.03 16 13 C 0.12 1.43 8.66 -17.13 -0.15 1.28 16 14 C 0.06 0.83 3.76 -3.71 -0.01 0.82 16 15 C 0.09 1.59 0.83 -89.44 -0.07 1.52 16 16 C -0.13 -2.35 6.12 -25.25 -0.15 -2.50 16 17 C 0.18 4.37 5.39 -2.95 -0.02 4.36 16 18 N -0.60 -15.25 3.40 -170.32 -0.58 -15.83 16 19 C -0.23 -6.43 10.26 -15.06 -0.15 -6.58 16 20 H 0.07 2.05 7.84 -52.49 -0.41 1.64 16 21 C 0.00 -0.12 5.48 -17.43 -0.10 -0.22 16 22 N -0.92 -26.92 10.36 55.49 0.57 -26.34 16 23 Si 0.91 22.19 29.56 -169.99 -5.02 17.16 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.12 2.55 6.19 -2.88 -0.02 2.54 16 28 O -0.35 -6.18 9.92 -35.22 -0.35 -6.53 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.30 7.10 -51.93 -0.37 0.93 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.14 1.52 8.03 -52.49 -0.42 1.09 16 35 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 36 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.18 1.85 5.24 -52.49 -0.27 1.57 16 38 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 39 H 0.11 1.47 3.54 -51.93 -0.18 1.29 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.16 8.00 -51.93 -0.42 0.75 16 42 H 0.05 1.28 7.55 -51.93 -0.39 0.88 16 43 H 0.05 1.26 7.36 -51.93 -0.38 0.87 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.02 0.41 7.83 -51.93 -0.41 0.00 16 46 H 0.04 0.84 6.10 -51.93 -0.32 0.53 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -33.85 361.68 -8.97 -42.83 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.41 Total: 1.61 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -2.07 Total: 5.58 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.65 Total: -57.07 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.26 Total: -15.56 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.85 -8.97 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071123762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.143 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds