Wall clock time and date at job start Sat Apr 11 2020 02:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.51245 * 2 1 4 4 C 1.53278 * 109.51139 * 239.89696 * 2 1 3 5 5 N 1.47170 * 108.55332 * 186.99619 * 4 2 1 6 6 C 1.34783 * 121.07681 * 231.23683 * 5 4 2 7 7 O 1.21553 * 120.00288 * 356.20995 * 6 5 4 8 8 C 1.47839 * 119.99622 * 176.48089 * 6 5 4 9 9 C 1.40020 * 120.56101 * 213.03655 * 8 6 5 10 10 C 1.38361 * 118.28892 * 180.02562 * 9 8 6 11 11 C 1.38351 * 119.30270 * 359.97438 * 10 9 8 12 12 N 1.31921 * 121.08091 * 0.02740 * 11 10 9 13 13 C 1.31702 * 121.87831 * 359.65179 * 12 11 10 14 14 C 1.47330 * 117.84204 * 51.51090 * 5 4 2 15 15 C 1.52772 * 108.21149 * 310.53166 * 14 5 4 16 16 C 1.54363 * 110.33817 * 173.65211 * 15 14 5 17 17 C 1.54463 * 102.87315 * 152.53448 * 16 15 14 18 18 N 1.47087 * 107.29456 * 338.50547 * 17 16 15 19 19 C 1.36936 * 125.62838 * 178.98984 * 18 17 16 20 20 H 1.08000 * 119.99962 * 186.11904 * 19 18 17 21 21 C 1.38813 * 119.99969 * 6.10854 * 19 18 17 22 22 N 1.31620 * 120.00475 * 353.16902 * 21 19 18 23 23 Si 1.86805 * 120.00051 * 173.16262 * 21 19 18 24 24 H 1.48504 * 109.47058 * 94.98658 * 23 21 19 25 25 H 1.48492 * 109.47556 * 214.98946 * 23 21 19 26 26 H 1.48503 * 109.46855 * 334.98936 * 23 21 19 27 27 C 1.47567 * 108.73784 * 359.00567 * 18 17 16 28 28 O 1.41888 * 111.39239 * 50.23567 * 15 14 5 29 29 H 1.09002 * 109.47667 * 180.09770 * 1 2 3 30 30 H 1.08995 * 109.47341 * 300.10314 * 1 2 3 31 31 H 1.09004 * 109.46786 * 60.09939 * 1 2 3 32 32 H 1.09007 * 109.62679 * 67.28079 * 4 2 1 33 33 H 1.08997 * 109.78192 * 306.80706 * 4 2 1 34 34 H 1.08000 * 120.85800 * 359.97438 * 9 8 6 35 35 H 1.08005 * 120.34661 * 179.97438 * 10 9 8 36 36 H 1.08004 * 119.45723 * 180.02562 * 11 10 9 37 37 H 1.08002 * 119.71599 * 180.31276 * 13 12 11 38 38 H 1.08998 * 109.64053 * 70.27952 * 14 5 4 39 39 H 1.08998 * 109.64565 * 190.91429 * 14 5 4 40 40 H 1.08992 * 110.73747 * 270.88417 * 16 15 14 41 41 H 1.09005 * 110.72742 * 34.19220 * 16 15 14 42 42 H 1.08992 * 109.87937 * 97.93150 * 17 16 15 43 43 H 1.09002 * 109.87742 * 218.93304 * 17 16 15 44 44 H 0.96997 * 120.00253 * 180.02562 * 22 21 19 45 45 H 1.08997 * 110.37628 * 264.48693 * 27 18 17 46 46 H 1.09007 * 110.37008 * 142.14683 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0419 -0.7246 -1.2499 5 7 3.5036 -0.8610 -1.1464 6 6 4.3117 -0.4722 -2.1526 7 8 3.8336 -0.0642 -3.1930 8 6 5.7795 -0.5476 -1.9930 9 6 6.6120 0.3943 -2.6099 10 6 7.9790 0.2790 -2.4295 11 6 8.4748 -0.7529 -1.6526 12 7 7.6662 -1.6260 -1.0834 13 6 6.3582 -1.5548 -1.2202 14 6 4.0546 -1.4421 0.0903 15 6 3.4226 -0.7209 1.2796 16 6 3.8443 -1.3959 2.6022 17 6 3.7652 -0.2371 3.6204 18 7 3.8528 1.0193 2.8607 19 6 3.8005 2.2794 3.3942 20 1 3.7744 3.1407 2.7432 21 6 3.7809 2.4496 4.7717 22 7 3.6767 1.4029 5.5628 23 14 3.9024 4.1644 5.5027 24 1 2.5382 4.6844 5.7746 25 1 4.6726 4.1084 6.7710 26 1 4.5928 5.0636 4.5435 27 6 4.0060 0.6976 1.4287 28 8 2.0089 -0.6770 1.1665 29 1 -0.3634 -1.0276 0.0018 30 1 -0.3634 0.5154 0.8890 31 1 -0.3633 0.5123 -0.8909 32 1 1.7905 -0.1448 -2.1381 33 1 1.5859 -1.7124 -1.3164 34 1 6.1979 1.1898 -3.2116 35 1 8.6518 0.9870 -2.8904 36 1 9.5414 -0.8450 -1.5099 37 1 5.7285 -2.2855 -0.7345 38 1 3.8162 -2.5049 0.1336 39 1 5.1357 -1.3049 0.1097 40 1 3.1486 -2.1916 2.8684 41 1 4.8623 -1.7793 2.5322 42 1 2.8180 -0.2800 4.1579 43 1 4.5943 -0.3055 4.3248 44 1 3.6626 1.5219 6.5253 45 1 5.0593 0.7062 1.1483 46 1 3.4443 1.4052 0.8186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071123762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:55:13 Heat of formation + Delta-G solvation = -1.647819 kcal Electronic energy + Delta-G solvation = -30037.543829 eV Core-core repulsion = 26121.474692 eV Total energy + Delta-G solvation = -3916.069137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30689 -40.96034 -39.78800 -37.86219 -36.17905 -34.89002 -33.60841 -33.21792 -32.36470 -31.12240 -29.85246 -27.97063 -27.56733 -25.83760 -24.84588 -24.52721 -23.14784 -22.00664 -21.33579 -20.45210 -19.05232 -18.71170 -18.45242 -17.80326 -17.38590 -17.06780 -16.79968 -16.37272 -16.13096 -15.77370 -15.59959 -15.31515 -15.10556 -14.79208 -14.72371 -14.23964 -14.13780 -13.98403 -13.81191 -13.55183 -13.28801 -13.18282 -13.05924 -12.81840 -12.77046 -12.69944 -12.25913 -12.10897 -12.02641 -11.99623 -11.74185 -11.70555 -11.14789 -11.01655 -10.93153 -10.69928 -10.51274 -10.16832 -9.62979 -8.91021 -7.89039 -5.23287 -0.36724 0.15664 1.42311 1.43672 1.49138 1.53124 1.72362 2.45460 2.57295 2.74791 3.12112 3.28032 3.32587 3.50428 3.63294 3.69632 3.75390 3.84511 3.87348 3.93797 3.99014 4.04225 4.14667 4.24081 4.39736 4.45380 4.47868 4.56236 4.61368 4.62158 4.66751 4.75352 4.90417 4.92753 4.94632 5.01216 5.03763 5.07518 5.14414 5.29017 5.39786 5.55466 5.64870 5.74573 6.07789 6.16446 6.32646 6.78524 6.86587 7.07340 7.73038 8.37800 9.21593 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010884 B = 0.004556 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.946738 B = 6144.463110 C = 7414.325510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.068 3.932 3 H 0.038 0.962 4 C 0.091 3.909 5 N -0.604 5.604 6 C 0.568 3.432 7 O -0.568 6.568 8 C -0.202 4.202 9 C -0.034 4.034 10 C -0.167 4.167 11 C 0.117 3.883 12 N -0.504 5.504 13 C 0.113 3.887 14 C 0.072 3.928 15 C 0.101 3.899 16 C -0.117 4.117 17 C 0.189 3.811 18 N -0.618 5.618 19 C -0.247 4.247 20 H 0.072 0.928 21 C -0.058 4.058 22 N -0.945 5.945 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.271 1.271 27 C 0.122 3.878 28 O -0.366 6.366 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.145 0.855 35 H 0.177 0.823 36 H 0.194 0.806 37 H 0.187 0.813 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.005 0.995 43 H 0.016 0.984 44 H 0.249 0.751 45 H 0.023 0.977 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.368 -8.255 -16.756 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 H 0.056 0.944 4 C -0.031 4.031 5 N -0.335 5.335 6 C 0.358 3.642 7 O -0.448 6.448 8 C -0.208 4.208 9 C -0.060 4.060 10 C -0.187 4.187 11 C -0.040 4.040 12 N -0.212 5.212 13 C -0.044 4.044 14 C -0.050 4.050 15 C 0.060 3.940 16 C -0.155 4.155 17 C 0.064 3.936 18 N -0.344 5.344 19 C -0.376 4.376 20 H 0.090 0.910 21 C -0.252 4.252 22 N -0.593 5.593 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.196 1.196 27 C -0.004 4.004 28 O -0.285 6.285 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.194 0.806 36 H 0.211 0.789 37 H 0.204 0.796 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.121 0.879 42 H 0.023 0.977 43 H 0.034 0.966 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.334 -8.695 -16.470 19.122 hybrid contribution -0.418 2.096 0.279 2.155 sum 3.916 -6.600 -16.191 17.918 Atomic orbital electron populations 1.21677 0.90299 1.04023 1.03108 1.22588 0.97007 0.94713 0.84660 0.94420 1.22419 0.78668 1.03065 0.98917 1.48125 1.07372 1.61509 1.16478 1.18339 0.86625 0.76469 0.82778 1.90739 1.77133 1.48673 1.28296 1.20904 0.93464 1.01662 1.04723 1.21895 0.94063 0.96169 0.93912 1.22516 0.95115 1.00667 1.00362 1.23657 1.01686 0.88671 0.89946 1.67834 1.04455 1.27385 1.21548 1.23732 0.91994 0.96270 0.92424 1.23304 1.00975 0.99256 0.81467 1.22297 0.81741 0.94552 0.95417 1.22757 1.02601 0.97987 0.92143 1.20916 0.97647 0.83323 0.91743 1.44665 1.85725 1.02266 1.01722 1.19317 1.43732 0.83876 0.90639 0.91028 1.25598 1.02195 1.01098 0.96274 1.70179 1.57112 1.29277 1.02724 0.85138 0.77471 0.79420 0.77760 1.21401 1.21497 1.19598 1.22011 0.96794 0.95454 0.86113 1.87828 1.19941 1.76769 1.43983 0.90128 0.92974 0.88735 0.88259 0.88080 0.83723 0.80572 0.78940 0.79619 0.86315 0.86092 0.88779 0.87877 0.97695 0.96591 0.94215 0.95932 0.95584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.57 71.98 0.69 -2.45 16 2 C 0.07 2.01 3.20 30.69 0.10 2.11 16 3 H 0.04 1.32 6.26 -2.39 -0.01 1.31 16 4 C 0.09 2.24 5.89 86.34 0.51 2.75 16 5 N -0.60 -15.75 2.95 -821.29 -2.42 -18.18 16 6 C 0.57 16.08 7.48 86.78 0.65 16.73 16 7 O -0.57 -18.99 16.33 -3.88 -0.06 -19.05 16 8 C -0.20 -4.98 5.55 -19.99 -0.11 -5.09 16 9 C -0.03 -0.73 9.75 22.73 0.22 -0.51 16 10 C -0.17 -2.63 10.10 22.33 0.23 -2.41 16 11 C 0.12 1.96 11.17 84.71 0.95 2.91 16 12 N -0.50 -11.07 10.35 -194.75 -2.01 -13.09 16 13 C 0.11 2.50 8.66 85.02 0.74 3.24 16 14 C 0.07 1.77 3.76 86.15 0.32 2.09 16 15 C 0.10 3.39 0.83 -10.03 -0.01 3.38 16 16 C -0.12 -4.05 6.12 31.55 0.19 -3.86 16 17 C 0.19 9.37 5.39 86.76 0.47 9.84 16 18 N -0.62 -32.54 3.40 -692.77 -2.36 -34.90 16 19 C -0.25 -14.29 10.26 84.03 0.86 -13.43 16 20 H 0.07 4.06 7.84 -2.91 -0.02 4.03 16 21 C -0.06 -3.37 5.48 84.86 0.47 -2.90 16 22 N -0.94 -57.38 10.36 21.65 0.22 -57.16 16 23 Si 0.97 46.52 29.56 68.60 2.03 48.55 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 27 C 0.12 5.16 6.19 86.55 0.54 5.69 16 28 O -0.37 -12.84 9.92 -148.95 -1.48 -14.31 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 32 H 0.10 2.47 7.10 -2.38 -0.02 2.45 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.14 2.96 8.03 -2.91 -0.02 2.93 16 35 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.19 1.85 8.06 -2.91 -0.02 1.82 16 37 H 0.19 3.44 5.24 -2.91 -0.02 3.42 16 38 H 0.12 2.18 8.10 -2.39 -0.02 2.16 16 39 H 0.12 2.85 3.54 -2.39 -0.01 2.84 16 40 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.10 2.99 8.00 -2.38 -0.02 2.97 16 42 H 0.00 0.27 7.55 -2.39 -0.02 0.25 16 43 H 0.02 0.88 7.36 -2.39 -0.02 0.86 16 44 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.02 0.96 7.83 -2.39 -0.02 0.94 16 46 H 0.03 1.16 6.10 -2.38 -0.01 1.15 16 Total: -1.00 -77.08 361.68 1.72 -75.36 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 1.00 Total: 14.69 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 6.80 Total: 18.09 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -6.57 Total: -123.32 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.54 Total: -33.36 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -77.08 1.72 -75.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071123762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.716 kcal (2) G-P(sol) polarization free energy of solvation -77.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds