Wall clock time and date at job start Sat Apr 11 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.50189 * 2 1 4 4 C 1.53036 * 109.52776 * 120.08280 * 2 1 3 5 5 C 1.53042 * 109.54099 * 181.32948 * 4 2 1 6 6 C 1.53196 * 109.31174 * 298.63355 * 5 4 2 7 7 N 1.46928 * 108.77213 * 54.63550 * 6 5 4 8 8 C 1.34776 * 120.62766 * 126.36743 * 7 6 5 9 9 O 1.21728 * 120.00058 * 173.06876 * 8 7 6 10 10 C 1.46494 * 120.00211 * 353.06947 * 8 7 6 11 11 C 1.37782 * 125.85906 * 154.69651 * 10 8 7 12 12 C 1.39932 * 107.68908 * 179.97438 * 11 10 8 13 13 O 1.35118 * 145.14588 * 180.02562 * 12 11 10 14 14 C 1.34377 * 109.62585 * 179.97438 * 13 12 11 15 15 C 1.34460 * 109.45004 * 359.97438 * 14 13 12 16 16 C 1.39144 * 107.40162 * 359.97438 * 12 11 10 17 17 N 1.37108 * 108.11007 * 359.77243 * 16 12 11 18 18 H 0.97000 * 125.74390 * 180.21942 * 17 16 12 19 19 C 1.46925 * 118.73971 * 306.38876 * 7 6 5 20 20 H 1.09001 * 109.58351 * 293.82242 * 19 7 6 21 21 C 1.53001 * 109.58599 * 173.54319 * 19 7 6 22 22 N 1.46494 * 109.47473 * 77.62941 * 21 19 7 23 23 C 1.36937 * 120.00355 * 174.63685 * 22 21 19 24 24 H 1.08003 * 119.99421 * 359.97438 * 23 22 21 25 25 C 1.38805 * 120.00307 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00124 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00086 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.47241 * 60.00501 * 27 25 23 29 29 H 1.48505 * 109.47131 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47544 * 300.00580 * 27 25 23 31 31 H 1.09000 * 109.47104 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46722 * 300.06274 * 1 2 3 33 33 H 1.08996 * 109.47307 * 60.06133 * 1 2 3 34 34 H 1.09000 * 109.46206 * 301.34993 * 4 2 1 35 35 H 1.09000 * 109.45902 * 61.31030 * 4 2 1 36 36 H 1.09002 * 109.49567 * 178.68769 * 5 4 2 37 37 H 1.08996 * 109.49903 * 58.58533 * 5 4 2 38 38 H 1.08996 * 109.58940 * 294.84519 * 6 5 4 39 39 H 1.08998 * 109.58505 * 174.42147 * 6 5 4 40 40 H 1.08000 * 126.15861 * 359.93836 * 11 10 8 41 41 H 1.08004 * 125.27312 * 180.02562 * 14 13 12 42 42 H 1.07999 * 126.41359 * 179.97438 * 15 14 13 43 43 H 1.08999 * 109.47173 * 197.63399 * 21 19 7 44 44 H 1.09001 * 109.46865 * 317.62718 * 21 19 7 45 45 H 0.97002 * 119.99791 * 354.63293 * 22 21 19 46 46 H 0.96999 * 120.00334 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0415 -0.7230 1.2481 5 6 3.5716 -0.6943 1.2652 6 6 4.1059 -1.4256 0.0297 7 7 3.5046 -0.8281 -1.1703 8 6 4.2806 -0.3841 -2.1788 9 8 3.7714 -0.0080 -3.2185 10 6 5.7370 -0.3542 -2.0238 11 6 6.6588 -0.4092 -3.0464 12 6 7.9340 -0.3535 -2.4728 13 8 9.2622 -0.3512 -2.7208 14 6 9.9375 -0.2649 -1.5623 15 6 9.0665 -0.2088 -0.5394 16 6 7.7667 -0.2639 -1.0944 17 7 6.4218 -0.2594 -0.8277 18 1 6.0189 -0.2020 0.0528 19 6 2.0412 -0.7234 -1.2498 20 1 1.6056 -1.7214 -1.2983 21 6 1.6508 0.0678 -2.4999 22 7 1.7688 -0.7930 -3.6793 23 6 1.3654 -0.3344 -4.9049 24 1 0.9598 0.6619 -5.0018 25 6 1.4777 -1.1498 -6.0226 26 7 1.9715 -2.3641 -5.9044 27 14 0.9267 -0.5243 -7.6943 28 1 1.7097 0.6855 -8.0528 29 1 1.1494 -1.5792 -8.7155 30 1 -0.5174 -0.1821 -7.6435 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5148 0.8895 33 1 -0.3634 0.5129 -0.8905 34 1 1.6590 -0.2247 2.1388 35 1 1.6979 -1.7573 1.2350 36 1 3.9346 -1.1890 2.1661 37 1 3.9162 0.3397 1.2533 38 1 3.8387 -2.4808 0.0857 39 1 5.1901 -1.3231 -0.0151 40 1 6.4372 -0.4826 -4.1008 41 1 11.0132 -0.2430 -1.4675 42 1 9.3133 -0.1361 0.5095 43 1 0.6216 0.4138 -2.4041 44 1 2.3140 0.9259 -2.6085 45 1 2.1328 -1.6879 -3.5922 46 1 2.0497 -2.9341 -6.6853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496469310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:54:54 Heat of formation + Delta-G solvation = 96.483225 kcal Electronic energy + Delta-G solvation = -29660.727978 eV Core-core repulsion = 25748.914122 eV Total energy + Delta-G solvation = -3911.813856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.89279 -40.63400 -38.95680 -37.24985 -34.63484 -33.58791 -32.32085 -32.17777 -30.60216 -30.27268 -28.42616 -26.89382 -26.08713 -24.31116 -22.99019 -22.44848 -21.47516 -21.04552 -20.58394 -20.17669 -19.13871 -17.78493 -17.19667 -16.56275 -16.20355 -15.93594 -15.35785 -15.02984 -14.77215 -14.65469 -14.26539 -13.87739 -13.74752 -13.58698 -13.42084 -13.26001 -12.93703 -12.80954 -12.61743 -12.51798 -12.23173 -11.96812 -11.77659 -11.65597 -11.52831 -11.08155 -10.90235 -10.70140 -10.64548 -10.60501 -10.18930 -10.02759 -9.81928 -9.47629 -8.79781 -8.62147 -8.49840 -8.16065 -7.75731 -6.52040 -5.50939 -2.71723 1.17508 2.36518 2.55943 2.73636 2.91095 3.30326 3.58759 3.62934 3.64345 3.72077 4.49333 4.58171 4.64785 4.71853 4.76635 4.81481 4.94795 5.01160 5.20046 5.26014 5.30671 5.45706 5.49379 5.55315 5.62874 5.66597 5.71249 5.77696 5.81009 5.85321 5.92035 5.96203 6.01252 6.11765 6.22592 6.28217 6.38762 6.40112 6.53587 6.62025 6.71859 6.92155 7.19688 7.23142 7.34746 7.74776 7.90707 8.66209 8.70242 9.78554 10.38594 10.73243 11.72860 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.009307 B = 0.004799 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.676973 B = 5832.984636 C = 8486.714003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.139 4.139 6 C 0.088 3.912 7 N -0.611 5.611 8 C 0.548 3.452 9 O -0.421 6.421 10 C 0.031 3.969 11 C -0.092 4.092 12 C -0.033 4.033 13 O -0.169 6.169 14 C 0.000 4.000 15 C -0.201 4.201 16 C -0.010 4.010 17 N -0.539 5.539 18 H 0.421 0.579 19 C 0.149 3.851 20 H 0.073 0.927 21 C 0.156 3.844 22 N -0.699 5.699 23 C -0.210 4.210 24 H 0.064 0.936 25 C -0.019 4.019 26 N -0.937 5.937 27 Si 0.901 3.099 28 H -0.289 1.289 29 H -0.294 1.294 30 H -0.290 1.290 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.161 0.839 41 H 0.208 0.792 42 H 0.149 0.851 43 H 0.023 0.977 44 H 0.038 0.962 45 H 0.380 0.620 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.491 3.125 20.362 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.177 4.177 6 C -0.037 4.037 7 N -0.348 5.348 8 C 0.332 3.668 9 O -0.288 6.288 10 C -0.081 4.081 11 C -0.119 4.119 12 C -0.085 4.085 13 O -0.066 6.066 14 C -0.068 4.068 15 C -0.222 4.222 16 C -0.122 4.122 17 N -0.150 5.150 18 H 0.265 0.735 19 C 0.046 3.954 20 H 0.091 0.909 21 C 0.028 3.972 22 N -0.342 5.342 23 C -0.342 4.342 24 H 0.082 0.918 25 C -0.214 4.214 26 N -0.588 5.588 27 Si 0.733 3.267 28 H -0.216 1.216 29 H -0.220 1.220 30 H -0.217 1.217 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.178 0.822 41 H 0.225 0.775 42 H 0.167 0.833 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.214 0.786 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.151 3.453 19.417 22.181 hybrid contribution -0.013 -0.060 -0.135 0.148 sum 10.137 3.393 19.283 22.048 Atomic orbital electron populations 1.21849 0.94172 1.02284 1.02097 1.21475 0.96296 0.99872 0.94235 0.90927 1.21557 0.94449 1.01148 0.97799 1.21995 0.97268 1.00923 0.97516 1.22129 0.98425 0.98067 0.85045 1.47807 1.06665 1.62551 1.17826 1.17065 0.83251 0.81858 0.84606 1.91360 1.70316 1.42312 1.24813 1.20800 0.92772 1.11339 0.83216 1.19990 0.84599 1.07726 0.99582 1.19356 0.83522 1.12397 0.93196 1.84012 1.15282 1.75107 1.32216 1.23954 0.97868 1.03438 0.81538 1.20475 0.88201 1.13249 1.00299 1.19072 0.85971 1.11948 0.95217 1.42090 1.03085 1.61592 1.08276 0.73507 1.21581 0.77914 1.00016 0.95866 0.90914 1.20997 0.96788 0.94390 0.85004 1.42166 1.74658 1.14733 1.02623 1.19097 1.31681 0.97861 0.85603 0.91794 1.24599 1.02869 0.96545 0.97381 1.69646 1.52412 1.08041 1.28671 0.86339 0.78079 0.77408 0.84845 1.21597 1.21984 1.21698 0.92465 0.92877 0.91369 0.91755 0.91590 0.90814 0.91734 0.91019 0.89727 0.82168 0.77529 0.83288 0.95918 0.94486 0.78650 0.93965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.00 37.16 0.33 -1.37 16 2 C -0.10 -1.21 2.34 -90.50 -0.21 -1.43 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.06 5.17 -26.69 -0.14 -1.20 16 5 C -0.14 -1.18 6.00 -26.61 -0.16 -1.34 16 6 C 0.09 0.97 5.87 -3.71 -0.02 0.95 16 7 N -0.61 -9.45 2.97 -166.81 -0.50 -9.95 16 8 C 0.55 10.28 7.33 -12.93 -0.09 10.19 16 9 O -0.42 -10.05 11.06 5.16 0.06 -9.99 16 10 C 0.03 0.51 6.42 -81.86 -0.53 -0.02 16 11 C -0.09 -1.61 10.67 -39.11 -0.42 -2.03 16 12 C -0.03 -0.52 8.20 -38.61 -0.32 -0.83 16 13 O -0.17 -2.38 10.68 3.21 0.03 -2.35 16 14 C 0.00 0.00 12.02 29.40 0.35 0.35 16 15 C -0.20 -2.06 10.89 -39.70 -0.43 -2.49 16 16 C -0.01 -0.14 8.11 -83.95 -0.68 -0.82 16 17 N -0.54 -6.94 4.88 -7.04 -0.03 -6.98 16 18 H 0.42 4.18 6.30 -40.82 -0.26 3.92 16 19 C 0.15 2.43 2.35 -67.60 -0.16 2.27 16 20 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 21 C 0.16 3.29 4.89 -4.04 -0.02 3.27 16 22 N -0.70 -18.55 3.36 -59.91 -0.20 -18.75 16 23 C -0.21 -6.22 9.84 -15.06 -0.15 -6.37 16 24 H 0.06 1.86 7.83 -52.48 -0.41 1.45 16 25 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 26 N -0.94 -29.81 13.06 55.49 0.72 -29.09 16 27 Si 0.90 23.80 29.55 -169.99 -5.02 18.77 16 28 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 29 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 30 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.90 6.32 -51.93 -0.33 0.57 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.88 3.45 -51.94 -0.18 0.70 16 40 H 0.16 2.94 8.06 -52.49 -0.42 2.52 16 41 H 0.21 1.01 8.06 -52.48 -0.42 0.58 16 42 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.02 0.48 6.04 -51.93 -0.31 0.17 16 44 H 0.04 0.86 6.04 -51.93 -0.31 0.55 16 45 H 0.38 10.80 7.52 -40.82 -0.31 10.50 16 46 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -36.03 360.72 -8.55 -44.58 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.32 Total: 9.88 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.73 Total: -1.56 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -0.01 Total: -64.77 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -5.02 Total: 18.77 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.03 -8.55 -44.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496469310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.064 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds