Wall clock time and date at job start Sat Apr 11 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 N 1.46898 * 109.46990 * 239.99462 * 2 1 3 5 5 C 1.53004 * 109.47024 * 119.99588 * 2 1 3 6 6 N 1.46500 * 109.46906 * 174.99938 * 5 2 1 7 7 C 1.34780 * 119.99756 * 180.02562 * 6 5 2 8 8 O 1.21354 * 120.00318 * 359.97438 * 7 6 5 9 9 C 1.49447 * 120.00203 * 180.02562 * 7 6 5 10 10 O 1.21360 * 119.99899 * 353.72773 * 9 7 6 11 11 N 1.34769 * 120.00779 * 173.72986 * 9 7 6 12 12 C 1.47248 * 121.36234 * 173.49753 * 11 9 7 13 13 C 1.52793 * 107.83440 * 115.85455 * 12 11 9 14 14 C 1.50571 * 110.84105 * 47.35304 * 13 12 11 15 15 C 1.41482 * 117.58122 * 160.32823 * 14 13 12 16 16 C 1.41405 * 119.98093 * 359.00676 * 15 14 13 17 17 H 1.08000 * 119.99611 * 34.69102 * 16 15 14 18 18 C 1.39942 * 120.00358 * 214.69097 * 16 15 14 19 19 N 1.30823 * 119.99937 * 5.29487 * 18 16 15 20 20 Si 1.86800 * 120.00029 * 185.29222 * 18 16 15 21 21 H 1.48500 * 109.47304 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46762 * 120.00140 * 20 18 16 23 23 H 1.48501 * 109.47055 * 240.00060 * 20 18 16 24 24 C 1.40411 * 120.05884 * 179.04981 * 15 14 13 25 25 C 1.37641 * 119.53599 * 0.26401 * 24 15 14 26 26 C 1.38338 * 119.98781 * 0.17571 * 25 24 15 27 27 C 1.36982 * 123.06046 * 340.10208 * 14 13 12 28 28 C 1.46676 * 121.35251 * 353.47916 * 11 9 7 29 29 H 1.09000 * 109.47121 * 300.00296 * 1 2 3 30 30 H 1.08998 * 109.46873 * 60.00393 * 1 2 3 31 31 H 1.08995 * 109.47447 * 180.02562 * 1 2 3 32 32 H 1.00905 * 110.99476 * 176.04460 * 4 2 1 33 33 H 1.00893 * 111.00334 * 300.00047 * 4 2 1 34 34 H 1.08996 * 109.47204 * 54.99854 * 5 2 1 35 35 H 1.09003 * 109.47037 * 294.99804 * 5 2 1 36 36 H 0.97001 * 120.00607 * 0.02562 * 6 5 2 37 37 H 1.08996 * 109.78709 * 356.27523 * 12 11 9 38 38 H 1.08996 * 109.83599 * 235.46123 * 12 11 9 39 39 H 1.09004 * 109.19472 * 167.69239 * 13 12 11 40 40 H 1.08999 * 109.19710 * 287.01665 * 13 12 11 41 41 H 0.96997 * 120.00521 * 179.97438 * 19 18 16 42 42 H 1.07993 * 120.23132 * 180.24435 * 24 15 14 43 43 H 1.07997 * 120.00277 * 180.14851 * 25 24 15 44 44 H 1.08000 * 119.46794 * 179.87091 * 26 25 24 45 45 H 1.08999 * 109.42712 * 344.37797 * 28 11 9 46 46 H 1.09002 * 109.43169 * 104.27636 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0400 -0.7212 1.2493 6 7 3.5000 -0.8263 1.1906 7 6 4.1730 -1.4291 2.1908 8 8 3.5695 -1.8843 3.1402 9 6 5.6624 -1.5359 2.1313 10 8 6.2566 -1.1835 1.1335 11 7 6.3458 -2.0234 3.1856 12 6 7.7948 -2.2743 3.1099 13 6 8.4843 -1.3369 4.1001 14 6 7.7933 -1.3682 5.4375 15 6 8.5213 -0.9127 6.5619 16 6 9.8555 -0.4704 6.4079 17 1 10.1524 0.0468 5.5075 18 6 10.7913 -0.7027 7.4222 19 7 10.4603 -1.4183 8.4661 20 14 12.5130 0.0090 7.2855 21 1 12.6331 0.7744 6.0187 22 1 12.7675 0.9132 8.4357 23 1 13.5068 -1.0945 7.2938 24 6 7.9205 -0.9004 7.8309 25 6 6.6235 -1.3389 7.9718 26 6 5.9226 -1.7910 6.8681 27 6 6.5070 -1.8089 5.6039 28 6 5.6766 -2.3255 4.4553 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.0262 -0.6501 -1.2558 33 1 1.6961 -1.6480 -1.2226 34 1 1.6053 -1.7197 1.2953 35 1 1.7516 -0.1581 2.1370 36 1 3.9825 -0.4622 0.4320 37 1 8.1521 -2.0719 2.1003 38 1 8.0052 -3.3104 3.3750 39 1 9.5216 -1.6479 4.2253 40 1 8.4600 -0.3203 3.7078 41 1 11.1089 -1.5797 9.1690 42 1 8.4724 -0.5497 8.6904 43 1 6.1532 -1.3304 8.9440 44 1 4.9060 -2.1351 6.9887 45 1 4.6974 -1.8470 4.4718 46 1 5.5547 -3.4042 4.5533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118924257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:53:51 Heat of formation + Delta-G solvation = -44.159220 kcal Electronic energy + Delta-G solvation = -28281.996248 eV Core-core repulsion = 24364.083678 eV Total energy + Delta-G solvation = -3917.912570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.87285 -39.06929 -38.00855 -37.34864 -35.69882 -33.73886 -33.61563 -31.94928 -30.19701 -29.72891 -28.95770 -27.36153 -25.45283 -25.06132 -23.83510 -22.30255 -21.37933 -20.66828 -20.24819 -18.94637 -17.48121 -17.10490 -16.91262 -16.59828 -16.15966 -15.82136 -15.39213 -15.17744 -14.97851 -14.48326 -14.29835 -14.20211 -13.64061 -13.51928 -13.44539 -13.05440 -12.86047 -12.64540 -12.49243 -12.32215 -12.27707 -11.89548 -11.64694 -11.50712 -11.50304 -11.25267 -11.22827 -10.96295 -10.90646 -10.46413 -10.19189 -9.82525 -9.55140 -9.37190 -9.27248 -9.23633 -9.11879 -8.43965 -7.29647 -7.21531 -6.69468 -4.42373 1.43750 2.29477 2.73857 2.84798 3.07299 3.11673 3.15193 3.23459 3.50256 3.93943 4.08069 4.28263 4.36182 4.62316 4.63111 4.83588 5.13636 5.31811 5.37362 5.40896 5.44628 5.62638 5.62878 5.71229 5.74699 5.83618 5.86711 5.97879 6.16449 6.29632 6.36702 6.39011 6.62438 6.64077 6.71002 6.83515 6.89960 6.94361 7.08199 7.14737 7.30468 7.44491 7.58028 7.68277 7.83095 7.98686 8.01972 8.05110 8.23074 8.59590 8.87085 8.92466 10.25610 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.002671 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.223103 B =10480.096138 C =11185.553498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 H 0.090 0.910 4 N -0.841 5.841 5 C 0.079 3.921 6 N -0.707 5.707 7 C 0.510 3.490 8 O -0.506 6.506 9 C 0.506 3.494 10 O -0.536 6.536 11 N -0.566 5.566 12 C 0.109 3.891 13 C -0.068 4.068 14 C -0.170 4.170 15 C 0.111 3.889 16 C -0.465 4.465 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.808 5.808 20 Si 0.909 3.091 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.151 4.151 25 C -0.108 4.108 26 C -0.222 4.222 27 C -0.083 4.083 28 C 0.131 3.869 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.342 0.658 33 H 0.343 0.657 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.409 0.591 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.278 0.722 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.596 0.058 -12.515 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 H 0.108 0.892 4 N -0.371 5.371 5 C -0.046 4.046 6 N -0.362 5.362 7 C 0.292 3.708 8 O -0.381 6.381 9 C 0.288 3.712 10 O -0.415 6.415 11 N -0.297 5.297 12 C -0.012 4.012 13 C -0.105 4.105 14 C -0.171 4.171 15 C 0.109 3.891 16 C -0.496 4.496 17 H 0.095 0.905 18 C -0.142 4.142 19 N -0.434 5.434 20 Si 0.734 3.266 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.170 4.170 25 C -0.126 4.126 26 C -0.242 4.242 27 C -0.083 4.083 28 C 0.010 3.990 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.246 0.754 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.135 0.865 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.142 0.858 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.029 0.363 -12.551 18.095 hybrid contribution 1.599 -0.321 0.716 1.782 sum -11.430 0.042 -11.835 16.453 Atomic orbital electron populations 1.21733 0.92971 1.02563 1.02755 1.21747 0.96714 0.98626 0.86608 0.89161 1.58979 1.16431 1.21757 1.39976 1.22400 0.79233 1.02142 1.00862 1.45756 1.07823 1.58816 1.23828 1.20332 0.88908 0.78854 0.82743 1.90632 1.69866 1.46293 1.31299 1.19813 0.87655 0.79723 0.84040 1.90721 1.70022 1.48779 1.31974 1.48006 1.09876 1.59791 1.12033 1.21920 0.77887 1.00195 1.01222 1.20425 0.99628 0.98221 0.92238 1.19344 0.94397 1.08407 0.94997 1.17628 0.92366 0.88679 0.90411 1.19527 0.93688 1.33632 1.02724 0.90460 1.25843 1.00929 0.93261 0.94200 1.69781 1.36155 1.29829 1.07678 0.86247 0.81579 0.79430 0.79355 1.18542 1.19949 1.20040 1.21277 0.93132 1.04012 0.98588 1.20635 0.95456 1.00193 0.96331 1.20227 0.99168 1.12346 0.92435 1.19177 0.94034 1.01736 0.93381 1.21338 0.97418 1.00626 0.79651 0.91650 0.91171 0.92368 0.84435 0.84410 0.90845 0.90323 0.75450 0.89312 0.90606 0.89635 0.92489 0.91147 0.86496 0.89184 0.89200 0.85822 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.49 37.16 0.35 -0.43 16 2 C 0.08 0.49 3.59 -67.71 -0.24 0.24 16 3 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 4 N -0.84 -5.47 9.18 -4.67 -0.04 -5.51 16 5 C 0.08 0.66 5.34 -4.04 -0.02 0.64 16 6 N -0.71 -7.37 5.33 -60.73 -0.32 -7.69 16 7 C 0.51 7.28 7.74 -11.59 -0.09 7.19 16 8 O -0.51 -8.14 13.26 5.49 0.07 -8.06 16 9 C 0.51 8.26 7.77 -11.59 -0.09 8.17 16 10 O -0.54 -9.22 16.01 5.49 0.09 -9.13 16 11 N -0.57 -9.88 2.93 -174.86 -0.51 -10.39 16 12 C 0.11 1.87 6.43 -3.74 -0.02 1.85 16 13 C -0.07 -1.35 4.99 -28.05 -0.14 -1.49 16 14 C -0.17 -3.94 5.82 -103.91 -0.60 -4.54 16 15 C 0.11 2.86 5.52 -106.64 -0.59 2.27 16 16 C -0.47 -11.85 7.79 -37.74 -0.29 -12.14 16 17 H 0.08 1.90 7.19 -52.49 -0.38 1.53 16 18 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 19 N -0.81 -20.66 10.97 55.55 0.61 -20.06 16 20 Si 0.91 18.57 29.56 -169.99 -5.03 13.54 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.15 -3.84 8.60 -38.98 -0.34 -4.18 16 25 C -0.11 -2.48 10.03 -39.76 -0.40 -2.88 16 26 C -0.22 -4.85 9.62 -39.15 -0.38 -5.23 16 27 C -0.08 -1.79 5.81 -104.61 -0.61 -2.40 16 28 C 0.13 2.39 5.58 -5.02 -0.03 2.36 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.34 2.18 7.53 -39.29 -0.30 1.88 16 33 H 0.34 2.02 9.00 -39.30 -0.35 1.66 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.41 3.79 6.65 -40.82 -0.27 3.52 16 37 H 0.09 1.42 7.11 -51.93 -0.37 1.05 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.73 7.18 -51.93 -0.37 1.35 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 42 H 0.12 3.10 6.48 -52.49 -0.34 2.76 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.09 1.76 8.05 -52.49 -0.42 1.34 16 45 H 0.12 2.27 4.76 -52.80 -0.25 2.02 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -28.76 371.56 -9.53 -38.29 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -6.42 Total: 12.27 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -3.58 Total: -8.85 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.27 Total: -43.65 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.16 Total: -17.20 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.76 -9.53 -38.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118924257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.870 kcal (2) G-P(sol) polarization free energy of solvation -28.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds