Wall clock time and date at job start Sat Apr 11 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46748 * 2 1 4 4 C 1.53004 * 109.46595 * 119.99802 * 2 1 3 5 5 N 1.46507 * 109.46728 * 175.00262 * 4 2 1 6 6 C 1.36934 * 119.99732 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00197 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99672 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99813 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00151 * 0.02562 * 8 6 5 11 11 H 1.48491 * 109.47484 * 89.99634 * 10 8 6 12 12 H 1.48500 * 109.46776 * 209.99787 * 10 8 6 13 13 H 1.48505 * 109.47019 * 329.99404 * 10 8 6 14 14 N 1.46496 * 109.47112 * 239.99919 * 2 1 3 15 15 C 1.46506 * 119.99759 * 299.99885 * 14 2 1 16 16 C 1.34771 * 120.00157 * 120.00213 * 14 2 1 17 17 O 1.21283 * 120.00062 * 0.02562 * 16 14 2 18 18 C 1.50700 * 120.00216 * 179.97438 * 16 14 2 19 19 C 1.52999 * 109.47172 * 179.97438 * 18 16 14 20 20 H 1.08996 * 110.07844 * 54.30315 * 19 18 16 21 21 N 1.46730 * 110.10199 * 292.74318 * 19 18 16 22 22 C 1.34548 * 108.68197 * 240.82766 * 21 19 18 23 23 O 1.21552 * 124.83447 * 179.97438 * 22 21 19 24 24 C 1.47544 * 110.30643 * 359.94218 * 22 21 19 25 25 C 1.39620 * 132.34239 * 180.02562 * 24 22 21 26 26 C 1.37946 * 119.82474 * 179.97438 * 25 24 22 27 27 C 1.38388 * 120.31933 * 359.97438 * 26 25 24 28 28 C 1.38472 * 120.18925 * 0.02562 * 27 26 25 29 29 C 1.37573 * 119.95422 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47223 * 300.00224 * 1 2 3 31 31 H 1.09001 * 109.47080 * 60.00198 * 1 2 3 32 32 H 1.08993 * 109.47250 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47043 * 294.99743 * 4 2 1 34 34 H 1.08995 * 109.47085 * 55.00348 * 4 2 1 35 35 H 0.97000 * 119.99906 * 359.97438 * 5 4 2 36 36 H 0.97005 * 120.00022 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47060 * 90.00688 * 15 14 2 38 38 H 1.09004 * 109.47073 * 210.00177 * 15 14 2 39 39 H 1.09000 * 109.47212 * 330.00260 * 15 14 2 40 40 H 1.09000 * 109.47357 * 300.00116 * 18 16 14 41 41 H 1.08998 * 109.46869 * 60.00030 * 18 16 14 42 42 H 0.97004 * 125.61882 * 60.81918 * 21 19 18 43 43 H 1.07997 * 120.08838 * 0.02862 * 25 24 22 44 44 H 1.08001 * 119.84036 * 180.02562 * 26 25 24 45 45 H 1.07999 * 119.89924 * 180.02562 * 27 26 25 46 46 H 1.07994 * 120.01937 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1837 -1.4388 2.2069 7 1 3.6465 -1.8447 3.0514 8 6 5.5671 -1.5388 2.1511 9 7 6.2242 -2.1270 3.1281 10 14 6.4961 -0.8374 0.6902 11 1 6.8578 0.5762 0.9658 12 1 7.7317 -1.6292 0.4629 13 1 5.6374 -0.9018 -0.5197 14 7 2.0183 -0.6906 -1.1961 15 6 1.6644 -2.0932 -1.4279 16 6 2.7932 -0.0357 -2.0833 17 8 3.0866 1.1253 -1.8911 18 6 3.2960 -0.7463 -3.3134 19 6 4.1454 0.2156 -4.1466 20 1 4.9380 0.6429 -3.5324 21 7 3.3036 1.2834 -4.6982 22 6 3.3645 1.2299 -6.0412 23 8 2.7761 1.9819 -6.7934 24 6 4.2480 0.1288 -6.4703 25 6 4.6325 -0.3315 -7.7311 26 6 5.4910 -1.4061 -7.8366 27 6 5.9731 -2.0295 -6.6991 28 6 5.5962 -1.5788 -5.4452 29 6 4.7405 -0.5078 -5.3288 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7515 -0.1582 2.1370 34 1 1.6053 -1.7197 1.2952 35 1 3.9823 -0.4628 0.4317 36 1 7.1910 -2.1966 3.0893 37 1 0.7376 -2.1445 -1.9993 38 1 2.4629 -2.5820 -1.9862 39 1 1.5294 -2.5969 -0.4707 40 1 3.9017 -1.6024 -3.0165 41 1 2.4484 -1.0892 -3.9068 42 1 2.7888 1.9215 -4.1798 43 1 4.2596 0.1531 -8.6213 44 1 5.7890 -1.7621 -8.8118 45 1 6.6452 -2.8701 -6.7896 46 1 5.9737 -2.0676 -4.5593 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568308024.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:54:04 Heat of formation + Delta-G solvation = -12.210545 kcal Electronic energy + Delta-G solvation = -28913.941578 eV Core-core repulsion = 24997.414406 eV Total energy + Delta-G solvation = -3916.527171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55105 -39.91318 -38.22283 -36.97402 -36.03506 -34.26161 -32.46769 -31.63445 -30.89723 -30.76134 -29.91967 -26.87956 -26.03304 -25.07862 -24.12686 -22.36804 -21.72670 -21.09760 -20.40052 -18.99968 -17.65050 -17.62765 -17.18020 -16.97916 -16.33481 -16.19939 -15.64747 -15.26219 -14.81136 -14.68505 -14.52882 -14.15960 -13.93576 -13.82559 -13.38098 -13.19820 -12.97549 -12.95271 -12.78461 -12.60224 -12.47275 -12.30721 -12.20754 -12.08568 -11.91037 -11.82209 -11.34542 -11.01672 -10.87562 -10.64562 -10.18888 -10.12887 -9.78620 -9.65092 -9.57080 -9.29970 -9.09046 -8.95831 -8.54393 -7.28368 -5.82224 -3.17343 0.47689 0.94396 2.57673 2.63802 2.99842 3.04248 3.29478 3.37466 3.41660 3.53361 3.79525 4.07456 4.45710 4.54266 4.55006 4.65587 4.67817 4.89003 4.97628 5.03865 5.08876 5.14767 5.23427 5.29324 5.33412 5.40110 5.48575 5.50660 5.56091 5.61432 5.73443 5.75388 5.87913 5.88480 5.96417 5.98025 6.04784 6.14724 6.32203 6.45488 6.52898 6.60571 6.74127 6.86430 7.43501 7.93606 8.05901 8.18468 8.36916 9.16242 9.88843 10.09244 11.36099 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011955 B = 0.003981 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.562586 B = 7031.362718 C = 8467.220589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.121 3.879 3 H 0.101 0.899 4 C 0.148 3.852 5 N -0.752 5.752 6 C -0.244 4.244 7 H 0.090 0.910 8 C 0.006 3.994 9 N -0.933 5.933 10 Si 0.884 3.116 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.280 1.280 14 N -0.595 5.595 15 C 0.077 3.923 16 C 0.516 3.484 17 O -0.545 6.545 18 C -0.146 4.146 19 C 0.184 3.816 20 H 0.113 0.887 21 N -0.705 5.705 22 C 0.559 3.441 23 O -0.533 6.533 24 C -0.156 4.156 25 C -0.048 4.048 26 C -0.127 4.127 27 C -0.087 4.087 28 C -0.100 4.100 29 C -0.076 4.076 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.038 0.962 34 H 0.029 0.971 35 H 0.362 0.638 36 H 0.259 0.741 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.431 0.569 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.134 0.866 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -1.926 -19.901 21.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.018 3.982 3 H 0.119 0.881 4 C 0.020 3.980 5 N -0.397 5.397 6 C -0.374 4.374 7 H 0.108 0.892 8 C -0.190 4.190 9 N -0.581 5.581 10 Si 0.715 3.285 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.206 1.206 14 N -0.328 5.328 15 C -0.066 4.066 16 C 0.304 3.696 17 O -0.423 6.423 18 C -0.187 4.187 19 C 0.078 3.922 20 H 0.131 0.869 21 N -0.362 5.362 22 C 0.346 3.654 23 O -0.411 6.411 24 C -0.159 4.159 25 C -0.067 4.067 26 C -0.145 4.145 27 C -0.105 4.105 28 C -0.118 4.118 29 C -0.077 4.077 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.196 0.804 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.274 0.726 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.810 -1.078 -19.980 21.136 hybrid contribution 0.640 0.478 -0.537 0.963 sum -6.170 -0.600 -20.517 21.433 Atomic orbital electron populations 1.22034 0.94699 1.02284 1.02236 1.21496 0.93777 0.98512 0.84448 0.88053 1.20988 0.85745 0.97422 0.93869 1.42632 1.01252 1.71359 1.24493 1.19049 0.89875 1.29423 0.99042 0.89225 1.24644 0.96155 1.00568 0.97594 1.69700 1.07319 1.48562 1.32527 0.86561 0.79592 0.79097 0.83296 1.21049 1.21723 1.20636 1.47744 1.50123 1.12470 1.22418 1.21797 1.00078 0.81596 1.03175 1.20396 0.78095 0.87008 0.84141 1.90684 1.57772 1.17018 1.76863 1.22066 1.01791 0.99739 0.95074 1.19797 0.93069 0.87085 0.92246 0.86922 1.45971 1.49333 1.34189 1.06670 1.18339 0.80758 0.83590 0.82676 1.90797 1.47905 1.45260 1.57097 1.20461 1.01641 0.99152 0.94631 1.20871 0.94984 0.94894 0.95973 1.21160 0.97997 0.96170 0.99196 1.21362 0.98222 0.99086 0.91836 1.20426 0.97195 0.95586 0.98575 1.20404 0.96943 0.95891 0.94509 0.91178 0.92624 0.92225 0.94429 0.95282 0.80450 0.93046 0.92877 0.91223 0.89835 0.86893 0.87992 0.72579 0.85023 0.84954 0.84789 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.19 37.16 0.34 -1.39 16 2 C 0.12 1.80 2.80 -67.93 -0.19 1.61 16 3 H 0.10 1.72 6.90 -51.93 -0.36 1.37 16 4 C 0.15 2.69 5.50 -4.04 -0.02 2.67 16 5 N -0.75 -17.45 5.24 -59.90 -0.31 -17.76 16 6 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 7 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 8 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 9 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 10 Si 0.88 22.09 27.74 -169.99 -4.71 17.37 16 11 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 14 N -0.60 -8.29 2.24 -173.92 -0.39 -8.68 16 15 C 0.08 0.83 9.30 59.85 0.56 1.39 16 16 C 0.52 7.56 7.27 -10.99 -0.08 7.48 16 17 O -0.55 -9.56 14.22 5.55 0.08 -9.48 16 18 C -0.15 -1.64 3.96 -27.88 -0.11 -1.75 16 19 C 0.18 2.20 3.05 -68.89 -0.21 1.99 16 20 H 0.11 1.48 7.95 -51.93 -0.41 1.06 16 21 N -0.70 -9.13 5.72 -55.83 -0.32 -9.45 16 22 C 0.56 7.94 8.35 -12.57 -0.10 7.83 16 23 O -0.53 -9.21 18.04 5.32 0.10 -9.12 16 24 C -0.16 -1.84 6.26 -105.05 -0.66 -2.50 16 25 C -0.05 -0.47 10.10 -39.17 -0.40 -0.86 16 26 C -0.13 -0.95 10.02 -39.63 -0.40 -1.35 16 27 C -0.09 -0.64 10.05 -39.44 -0.40 -1.03 16 28 C -0.10 -0.88 10.03 -39.74 -0.40 -1.28 16 29 C -0.08 -0.82 5.67 -104.27 -0.59 -1.41 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.60 7.67 -51.93 -0.40 0.21 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.03 0.51 6.88 -51.93 -0.36 0.16 16 35 H 0.36 8.53 4.93 -40.82 -0.20 8.33 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.68 6.44 -51.93 -0.33 0.34 16 39 H 0.08 0.99 6.53 -51.93 -0.34 0.65 16 40 H 0.11 1.14 7.40 -51.93 -0.38 0.76 16 41 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 42 H 0.43 5.68 8.07 -40.82 -0.33 5.35 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 46 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -35.46 377.49 -8.52 -43.98 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -6.51 Total: 11.04 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.91 Total: 4.55 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.25 Total: -64.04 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.17 Total: -18.60 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.37 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.46 -8.52 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568308024.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.774 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds