Wall clock time and date at job start Sat Apr 11 2020 02:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36943 * 119.70290 * 2 1 4 4 C 1.47888 * 119.75940 * 0.02562 * 3 2 1 5 5 O 1.21548 * 119.99935 * 274.74376 * 4 3 2 6 6 N 1.34777 * 120.00077 * 94.73444 * 4 3 2 7 7 C 1.45730 * 117.76298 * 354.91053 * 6 4 3 8 8 C 1.53053 * 109.55950 * 218.88992 * 7 6 4 9 9 C 1.52937 * 108.49203 * 306.19572 * 8 7 6 10 10 C 1.52335 * 109.87407 * 65.93762 * 9 8 7 11 11 H 1.08997 * 110.93209 * 66.62404 * 10 9 8 12 12 C 1.44190 * 117.75909 * 174.88581 * 6 4 3 13 13 H 1.09001 * 109.22834 * 27.36993 * 12 6 4 14 14 C 1.54072 * 111.76839 * 266.46810 * 12 6 4 15 15 C 1.54057 * 103.73983 * 206.73896 * 14 12 6 16 16 N 1.46881 * 107.70906 * 17.13512 * 15 14 12 17 17 C 1.36935 * 125.58003 * 182.96660 * 16 15 14 18 18 H 1.08005 * 120.00217 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00266 * 0.02562 * 17 16 15 20 20 N 1.31626 * 119.99994 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00302 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47315 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47141 * 300.00073 * 21 19 17 24 24 H 1.48496 * 109.47314 * 60.00061 * 21 19 17 25 25 C 1.36299 * 120.48631 * 179.74549 * 3 2 1 26 26 C 1.40402 * 119.90574 * 0.25539 * 25 3 2 27 27 C 1.36114 * 119.41474 * 0.02562 * 26 25 3 28 28 C 1.34670 * 119.70498 * 180.26413 * 2 1 3 29 29 O 1.21969 * 119.95385 * 359.96873 * 28 2 1 30 30 H 1.08996 * 109.46872 * 94.95162 * 1 2 3 31 31 H 1.08997 * 109.47065 * 214.95401 * 1 2 3 32 32 H 1.09004 * 109.46988 * 334.95178 * 1 2 3 33 33 H 1.09005 * 109.45445 * 338.91802 * 7 6 4 34 34 H 1.09000 * 109.45852 * 98.85844 * 7 6 4 35 35 H 1.09007 * 109.62936 * 65.89629 * 8 7 6 36 36 H 1.09000 * 109.63423 * 186.29236 * 8 7 6 37 37 H 1.09003 * 109.41758 * 186.08512 * 9 8 7 38 38 H 1.08994 * 109.42127 * 305.95840 * 9 8 7 39 39 H 1.09002 * 110.56868 * 88.17223 * 14 12 6 40 40 H 1.09003 * 110.69305 * 325.36320 * 14 12 6 41 41 H 1.08996 * 109.81221 * 257.57643 * 15 14 12 42 42 H 1.09006 * 109.86165 * 136.71544 * 15 14 12 43 43 H 0.96998 * 120.00347 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.04255 * 180.28237 * 25 3 2 45 45 H 1.08000 * 120.28896 * 179.97438 * 26 25 3 46 46 H 1.07996 * 120.23860 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1436 1.1895 0.0000 4 6 1.3922 2.4632 0.0006 5 8 1.0080 2.9427 -1.0482 6 7 1.1332 3.0924 1.1640 7 6 1.5157 2.4200 2.3991 8 6 0.4390 2.6499 3.4623 9 6 0.2013 4.1549 3.5945 10 6 -0.4012 4.6992 2.3055 11 1 -1.4043 4.3033 2.1470 12 6 0.4971 4.3849 1.1015 13 1 -0.0995 4.4477 0.1915 14 6 1.5279 5.5300 1.1104 15 6 0.7537 6.7144 1.7195 16 7 -0.4332 6.1728 2.3943 17 6 -1.4069 6.9130 3.0100 18 1 -2.2442 6.4191 3.4806 19 6 -1.3180 8.2981 3.0292 20 7 -0.2979 8.9001 2.4552 21 14 -2.6467 9.3078 3.8685 22 1 -2.3205 10.7517 3.7496 23 1 -3.9553 9.0414 3.2190 24 1 -2.7209 8.9332 5.3035 25 6 3.5065 1.2081 0.0052 26 6 4.2231 0.0008 0.0052 27 6 3.5446 -1.1793 -0.0006 28 6 2.1324 -1.1697 -0.0054 29 8 1.5163 -2.2223 -0.0097 30 1 -0.3633 -0.0887 -1.0238 31 1 -0.3633 -0.8423 0.5888 32 1 -0.3633 0.9311 0.4351 33 1 1.6200 1.3510 2.2132 34 1 2.4658 2.8213 2.7518 35 1 -0.4856 2.1583 3.1594 36 1 0.7740 2.2438 4.4167 37 1 -0.4831 4.3425 4.4218 38 1 1.1497 4.6560 3.7880 39 1 1.8493 5.7638 0.0954 40 1 2.3849 5.2720 1.7326 41 1 0.4487 7.4015 0.9302 42 1 1.3827 7.2364 2.4407 43 1 -0.2359 9.8680 2.4684 44 1 4.0343 2.1504 0.0098 45 1 5.3030 0.0083 0.0089 46 1 4.0824 -2.1158 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049709111.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:54:41 Heat of formation + Delta-G solvation = 7.249129 kcal Electronic energy + Delta-G solvation = -29737.287627 eV Core-core repulsion = 25821.604290 eV Total energy + Delta-G solvation = -3915.683337 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92253 -40.38018 -38.27880 -36.92719 -35.58799 -34.90371 -32.84908 -32.42405 -30.62086 -29.09031 -28.50859 -27.93133 -25.72542 -24.52262 -24.09048 -22.93676 -22.17873 -21.04855 -20.13742 -18.66687 -17.92517 -17.65346 -17.28765 -17.00709 -16.62689 -16.02422 -15.42199 -15.02398 -14.91559 -14.83046 -14.42937 -14.17926 -14.03205 -13.60177 -13.43333 -13.24114 -13.01486 -12.75778 -12.61956 -12.34500 -12.22313 -12.10934 -11.99215 -11.54619 -11.20806 -11.08205 -10.87372 -10.75168 -10.66800 -10.62253 -10.41143 -10.20487 -10.17059 -9.85311 -9.73907 -9.71567 -8.68984 -8.61461 -8.31380 -6.96307 -5.78927 -3.14352 0.35455 1.48430 1.82699 2.49797 2.81287 3.30375 3.35833 3.40563 3.41652 3.86678 4.29154 4.40799 4.55766 4.71153 4.81295 4.89890 4.93371 5.02248 5.07860 5.11599 5.20568 5.32315 5.36478 5.37967 5.49004 5.53875 5.59621 5.69362 5.72061 5.83429 5.89710 5.92732 6.05529 6.07356 6.15798 6.22382 6.38063 6.43827 6.57327 6.69730 6.75570 6.92426 7.13394 7.47816 7.53200 7.70849 7.74816 7.81184 8.16806 9.12688 9.72290 10.35936 11.31791 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.026588 B = 0.003083 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.862247 B = 9079.502421 C = 9352.187131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.485 5.485 3 C 0.137 3.863 4 C 0.546 3.454 5 O -0.510 6.510 6 N -0.569 5.569 7 C 0.106 3.894 8 C -0.130 4.130 9 C -0.131 4.131 10 C 0.163 3.837 11 H 0.055 0.945 12 C 0.131 3.869 13 H 0.097 0.903 14 C -0.150 4.150 15 C 0.179 3.821 16 N -0.595 5.595 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.004 4.004 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.290 1.290 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.192 4.192 26 C -0.017 4.017 27 C -0.231 4.231 28 C 0.516 3.484 29 O -0.549 6.549 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.254 0.746 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -16.197 -1.480 18.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.198 5.198 3 C 0.026 3.974 4 C 0.329 3.671 5 O -0.385 6.385 6 N -0.300 5.300 7 C -0.016 4.016 8 C -0.169 4.169 9 C -0.171 4.171 10 C 0.054 3.946 11 H 0.073 0.927 12 C 0.027 3.973 13 H 0.115 0.885 14 C -0.190 4.190 15 C 0.054 3.946 16 N -0.319 5.319 17 C -0.359 4.359 18 H 0.096 0.904 19 C -0.201 4.201 20 N -0.566 5.566 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.216 4.216 26 C -0.038 4.038 27 C -0.253 4.253 28 C 0.317 3.683 29 O -0.431 6.431 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.168 0.832 45 H 0.160 0.840 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 8.137 -16.290 -1.981 18.316 hybrid contribution -0.459 0.693 0.479 0.959 sum 7.678 -15.597 -1.501 17.449 Atomic orbital electron populations 1.22242 0.76664 1.04818 1.04731 1.45551 1.09346 1.05413 1.59500 1.20417 0.93328 0.86041 0.97585 1.18144 0.80132 0.83773 0.85039 1.90886 1.50117 1.66451 1.31015 1.47163 1.58194 1.19376 1.05308 1.21591 0.99105 0.96215 0.84712 1.21838 0.98204 0.99030 0.97822 1.22026 1.02168 0.92380 1.00544 1.20817 0.95731 0.87113 0.90933 0.92657 1.21366 0.94862 0.79785 1.01274 0.88486 1.23015 0.98063 0.96928 1.00987 1.21074 0.86928 0.90728 0.95857 1.44483 1.24418 0.98116 1.64889 1.18956 1.00293 0.88177 1.28491 0.90405 1.24804 0.98202 0.96413 1.00665 1.69948 1.30133 1.08523 1.48037 0.86191 0.81021 0.79329 0.79139 1.21581 1.21106 1.21147 1.20747 0.90623 1.00390 1.09799 1.21391 1.00980 0.91266 0.90196 1.22308 0.92486 1.00273 1.10190 1.17310 0.89324 0.82309 0.79334 1.90946 1.70006 1.29093 1.53058 0.89979 0.88384 0.89689 0.90918 0.90977 0.91636 0.90684 0.91496 0.91727 0.91743 0.92314 0.92788 0.93997 0.93580 0.83153 0.83958 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.61 9.98 59.85 0.60 1.20 16 2 N -0.48 -5.68 2.91 -122.80 -0.36 -6.04 16 3 C 0.14 1.56 4.20 -82.33 -0.35 1.22 16 4 C 0.55 7.50 5.12 -12.31 -0.06 7.44 16 5 O -0.51 -8.82 16.36 5.32 0.09 -8.73 16 6 N -0.57 -7.63 2.80 -168.51 -0.47 -8.10 16 7 C 0.11 1.15 6.06 -4.43 -0.03 1.12 16 8 C -0.13 -1.49 6.10 -26.74 -0.16 -1.65 16 9 C -0.13 -2.06 5.30 -27.10 -0.14 -2.20 16 10 C 0.16 3.01 3.25 -67.39 -0.22 2.79 16 11 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 12 C 0.13 2.20 2.78 -68.35 -0.19 2.01 16 13 H 0.10 1.83 7.03 -51.93 -0.37 1.46 16 14 C -0.15 -2.69 6.44 -25.62 -0.17 -2.86 16 15 C 0.18 4.10 5.39 -3.28 -0.02 4.08 16 16 N -0.59 -14.00 2.95 -163.95 -0.48 -14.48 16 17 C -0.23 -6.05 10.27 -15.06 -0.15 -6.21 16 18 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 19 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 20 N -0.92 -25.95 10.29 55.49 0.57 -25.38 16 21 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C -0.19 -1.74 9.70 -39.47 -0.38 -2.12 16 26 C -0.02 -0.13 10.08 -39.53 -0.40 -0.52 16 27 C -0.23 -2.18 10.00 -39.21 -0.39 -2.57 16 28 C 0.52 6.49 7.43 -15.17 -0.11 6.38 16 29 O -0.55 -8.63 16.73 4.95 0.08 -8.54 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.10 0.98 7.56 -51.93 -0.39 0.59 16 32 H 0.08 0.89 6.69 -51.93 -0.35 0.55 16 33 H 0.07 0.70 6.33 -51.93 -0.33 0.37 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 1.09 8.01 -51.93 -0.42 0.67 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 1.40 7.25 -51.93 -0.38 1.02 16 42 H 0.04 1.06 7.60 -51.93 -0.39 0.66 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.15 1.16 8.06 -52.48 -0.42 0.74 16 45 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 46 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -32.04 366.42 -9.16 -41.20 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.82 Total: 0.33 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: -2.27 Total: 7.90 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.74 Total: -54.00 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.17 Total: -17.28 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.04 -9.16 -41.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049709111.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.453 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds