Wall clock time and date at job start Sat Apr 11 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00136 * 2 1 4 4 C 1.34775 * 119.99821 * 180.02562 * 2 1 3 5 5 O 1.21553 * 120.00205 * 4.81735 * 4 2 1 6 6 C 1.47856 * 120.00081 * 184.83036 * 4 2 1 7 7 C 1.39713 * 120.07093 * 324.74802 * 6 4 2 8 8 C 1.38061 * 120.14191 * 180.02562 * 7 6 4 9 9 C 1.38097 * 120.30088 * 359.97281 * 8 7 6 10 10 C 1.39677 * 120.14211 * 359.97438 * 9 8 7 11 11 C 1.47856 * 120.07101 * 180.02562 * 10 9 8 12 12 O 1.21548 * 120.00053 * 218.18179 * 11 10 9 13 13 N 1.34780 * 119.99717 * 38.18828 * 11 10 9 14 14 C 1.46500 * 120.00439 * 356.01334 * 13 11 10 15 15 C 1.46505 * 119.99735 * 176.01068 * 13 11 10 16 16 C 1.53494 * 114.20489 * 119.99620 * 15 13 11 17 17 N 1.47071 * 87.98319 * 87.71974 * 16 15 13 18 18 C 1.36936 * 136.05996 * 207.08765 * 17 16 15 19 19 H 1.08005 * 119.99733 * 5.24298 * 18 17 16 20 20 C 1.38807 * 120.00159 * 185.25393 * 18 17 16 21 21 N 1.31615 * 120.00019 * 5.18749 * 20 18 17 22 22 Si 1.86800 * 120.00000 * 185.19213 * 20 18 17 23 23 H 1.48503 * 109.47196 * 264.99813 * 22 20 18 24 24 H 1.48498 * 109.47318 * 24.99730 * 22 20 18 25 25 H 1.48502 * 109.47042 * 144.99743 * 22 20 18 26 26 C 1.47065 * 87.88398 * 27.34325 * 17 16 15 27 27 C 1.39301 * 120.07848 * 144.97860 * 6 4 2 28 28 H 1.08998 * 109.47181 * 269.99633 * 1 2 3 29 29 H 1.09007 * 109.46811 * 29.99694 * 1 2 3 30 30 H 1.09001 * 109.47552 * 149.99039 * 1 2 3 31 31 H 1.08998 * 109.47567 * 269.40590 * 3 2 1 32 32 H 1.08999 * 109.46927 * 29.40590 * 3 2 1 33 33 H 1.08999 * 109.46986 * 149.40243 * 3 2 1 34 34 H 1.07997 * 119.92654 * 359.97438 * 7 6 4 35 35 H 1.07999 * 119.84907 * 179.97438 * 8 7 6 36 36 H 1.07991 * 119.92770 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.46964 * 274.94409 * 14 13 11 38 38 H 1.08998 * 109.46865 * 34.94478 * 14 13 11 39 39 H 1.08994 * 109.47063 * 154.94596 * 14 13 11 40 40 H 1.09001 * 113.28149 * 346.94084 * 15 13 11 41 41 H 1.09006 * 113.46900 * 332.94246 * 16 15 13 42 42 H 1.09004 * 113.47010 * 202.49774 * 16 15 13 43 43 H 0.97001 * 120.00006 * 180.02562 * 21 20 18 44 44 H 1.08995 * 113.47120 * 87.43581 * 26 17 16 45 45 H 1.09000 * 113.46602 * 217.88305 * 26 17 16 46 46 H 1.08002 * 120.14146 * 359.97438 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5343 -2.2180 -0.0894 6 6 3.6135 -1.1696 0.1073 7 6 4.3611 -0.1546 -0.4950 8 6 5.7381 -0.1556 -0.3957 9 6 6.3858 -1.1581 0.2991 10 6 5.6503 -2.1782 0.9069 11 6 6.3454 -3.2504 1.6508 12 8 5.9415 -4.3950 1.5864 13 7 7.4267 -2.9585 2.4005 14 6 7.9659 -1.5964 2.4095 15 6 8.0629 -4.0035 3.2065 16 6 9.5314 -4.2689 2.8472 17 7 9.9013 -3.2076 3.7957 18 6 10.9417 -2.3282 3.9349 19 1 11.7069 -2.2723 3.1747 20 6 11.0132 -1.5089 5.0532 21 7 10.1392 -1.6476 6.0275 22 14 12.3496 -0.2095 5.1751 23 1 13.5010 -0.7538 5.9388 24 1 12.7960 0.1711 3.8109 25 1 11.8142 0.9872 5.8726 26 6 8.6651 -3.5106 4.5326 27 6 4.2608 -2.1864 0.8055 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5140 31 1 2.3885 1.5781 -1.0276 32 1 1.6039 2.0310 0.5046 33 1 3.1453 1.1410 0.5231 34 1 3.8607 0.6321 -1.0401 35 1 6.3114 0.6311 -0.8635 36 1 7.4631 -1.1528 0.3733 37 1 8.6463 -1.4694 1.5674 38 1 7.1476 -0.8812 2.3265 39 1 8.5050 -1.4252 3.3412 40 1 7.4562 -4.9041 3.3010 41 1 9.7750 -4.0301 1.8119 42 1 9.8793 -5.2580 3.1453 43 1 10.1889 -1.0748 6.8087 44 1 8.7846 -4.2997 5.2749 45 1 8.1706 -2.6256 4.9331 46 1 3.6877 -2.9752 1.2701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044200049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:17 Heat of formation + Delta-G solvation = 59.216721 kcal Electronic energy + Delta-G solvation = -28451.179846 eV Core-core repulsion = 24537.749994 eV Total energy + Delta-G solvation = -3913.429853 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.83256 -39.94889 -38.43439 -37.39148 -35.94722 -34.29011 -32.34468 -31.53492 -31.26024 -28.46146 -27.87570 -26.82885 -26.33076 -24.65060 -24.38283 -23.22070 -22.64739 -20.80961 -19.82214 -18.46692 -17.60995 -16.91824 -16.78463 -16.59260 -16.19315 -15.99909 -15.53196 -15.19981 -14.87070 -14.48374 -14.26473 -13.86994 -13.78339 -13.67811 -13.49039 -13.17921 -13.10858 -12.78261 -12.70229 -12.58957 -12.50089 -12.26597 -11.83249 -11.57612 -11.48812 -11.37512 -10.94220 -10.88795 -10.69301 -10.19634 -10.16099 -9.93809 -9.66766 -9.48895 -9.22241 -9.03098 -9.01026 -8.86848 -8.04962 -6.98469 -5.88253 -3.20064 0.61073 0.98342 2.42547 2.63704 2.98499 3.29909 3.32371 3.37304 3.39149 3.69035 4.15763 4.36848 4.47326 4.64046 4.70213 4.80911 4.90295 4.91973 5.04849 5.17883 5.19723 5.22931 5.29007 5.38381 5.40593 5.45465 5.51513 5.70619 5.71909 5.96425 6.00719 6.06900 6.07816 6.12874 6.16063 6.20024 6.43645 6.50619 6.58002 6.64393 6.88873 6.94853 7.08142 7.22257 7.42330 7.82850 7.84691 7.88371 8.45662 8.93348 9.59212 10.53714 11.29494 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017334 B = 0.002847 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.894421 B = 9834.128699 C =10654.480995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.619 5.619 3 C 0.066 3.934 4 C 0.562 3.438 5 O -0.530 6.530 6 C -0.145 4.145 7 C -0.083 4.083 8 C -0.134 4.134 9 C -0.066 4.066 10 C -0.124 4.124 11 C 0.553 3.447 12 O -0.543 6.543 13 N -0.567 5.567 14 C 0.072 3.928 15 C 0.081 3.919 16 C 0.105 3.895 17 N -0.607 5.607 18 C -0.218 4.218 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.280 1.280 25 H -0.290 1.290 26 C 0.152 3.848 27 C -0.011 4.011 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.146 0.854 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.255 0.745 44 H 0.042 0.958 45 H 0.069 0.931 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.613 9.014 -12.754 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.353 5.353 3 C -0.076 4.076 4 C 0.351 3.649 5 O -0.406 6.406 6 C -0.148 4.148 7 C -0.101 4.101 8 C -0.152 4.152 9 C -0.084 4.084 10 C -0.128 4.128 11 C 0.341 3.659 12 O -0.422 6.422 13 N -0.297 5.297 14 C -0.070 4.070 15 C -0.024 4.024 16 C -0.022 4.022 17 N -0.333 5.333 18 C -0.345 4.345 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.205 1.205 25 H -0.216 1.216 26 C 0.025 3.975 27 C -0.030 4.030 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.087 0.913 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.946 8.139 -12.650 21.204 hybrid contribution 0.979 0.827 0.282 1.312 sum -13.967 8.965 -12.368 20.698 Atomic orbital electron populations 1.21674 0.78666 1.03325 1.02103 1.47600 1.07233 1.06249 1.74245 1.22329 0.98437 0.85100 1.01768 1.18370 0.87140 0.83326 0.76086 1.90801 1.69805 1.31013 1.49028 1.19672 0.92657 0.98115 1.04397 1.21873 0.94458 0.96688 0.97079 1.21086 0.94042 0.99633 1.00484 1.22061 1.01606 0.91708 0.93052 1.19919 0.93824 0.96988 1.02025 1.18240 0.80379 0.87916 0.79408 1.90761 1.66438 1.21021 1.63976 1.47246 1.27669 1.11204 1.43532 1.22259 0.97996 0.80858 1.05896 1.22767 0.93939 0.90621 0.95036 1.22843 0.91408 0.92937 0.95052 1.45884 1.23422 1.35768 1.28275 1.18925 1.01180 1.10597 1.03819 0.90119 1.24803 0.99098 1.00523 0.95872 1.69838 1.37359 1.40899 1.08365 0.86147 0.81152 0.81129 0.77611 1.21660 1.20513 1.21592 1.22428 0.85796 0.98401 0.90847 1.21184 0.92814 0.95349 0.93697 0.92493 0.91093 0.90248 0.92047 0.90866 0.89479 0.84286 0.84645 0.83664 0.92872 0.92493 0.86651 0.88150 0.93946 0.93902 0.93520 0.94000 0.91277 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 10.47 59.85 0.63 1.24 16 2 N -0.62 -5.62 3.27 -190.64 -0.62 -6.25 16 3 C 0.07 0.36 8.81 59.85 0.53 0.89 16 4 C 0.56 7.16 7.40 -12.33 -0.09 7.07 16 5 O -0.53 -8.73 16.37 5.32 0.09 -8.64 16 6 C -0.15 -1.76 5.36 -105.02 -0.56 -2.32 16 7 C -0.08 -0.74 7.47 -39.10 -0.29 -1.03 16 8 C -0.13 -1.22 10.02 -39.70 -0.40 -1.62 16 9 C -0.07 -0.78 7.58 -39.10 -0.30 -1.07 16 10 C -0.12 -1.83 5.25 -105.02 -0.55 -2.38 16 11 C 0.55 9.91 7.37 -12.32 -0.09 9.82 16 12 O -0.54 -11.35 16.41 5.32 0.09 -11.26 16 13 N -0.57 -10.24 3.12 -174.67 -0.54 -10.78 16 14 C 0.07 1.21 8.05 59.85 0.48 1.69 16 15 C 0.08 1.58 4.66 -67.68 -0.32 1.27 16 16 C 0.10 2.13 8.31 -8.51 -0.07 2.06 16 17 N -0.61 -14.43 2.47 -184.62 -0.46 -14.89 16 18 C -0.22 -5.63 10.19 -15.06 -0.15 -5.78 16 19 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 21 N -0.92 -25.54 11.73 55.49 0.65 -24.89 16 22 Si 0.91 20.77 29.56 -169.99 -5.02 15.75 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 26 C 0.15 3.39 6.28 -8.37 -0.05 3.34 16 27 C -0.01 -0.16 9.18 -38.78 -0.36 -0.51 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.32 8.07 -51.92 -0.42 -0.10 16 30 H 0.08 0.69 7.36 -51.93 -0.38 0.31 16 31 H 0.06 0.23 7.13 -51.93 -0.37 -0.14 16 32 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 33 H 0.09 0.51 5.30 -51.93 -0.28 0.24 16 34 H 0.14 0.83 4.99 -52.49 -0.26 0.57 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.15 1.64 5.19 -52.49 -0.27 1.37 16 37 H 0.05 0.83 6.81 -51.93 -0.35 0.48 16 38 H 0.06 0.81 5.88 -51.93 -0.31 0.51 16 39 H 0.12 2.40 5.11 -51.93 -0.27 2.14 16 40 H 0.10 1.92 7.32 -51.93 -0.38 1.54 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 44 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.68 6.71 -51.93 -0.35 1.33 16 46 H 0.14 2.20 7.98 -52.49 -0.42 1.78 16 LS Contribution 368.83 15.07 5.56 5.56 Total: -1.00 -33.44 368.83 -8.09 -41.52 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -6.13 Total: 1.48 kcal Atomic # 6 Polarization: 14.09 SS G_CDS: -1.69 Total: 12.40 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.97 Total: -56.80 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.17 Total: -19.90 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.44 -8.09 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044200049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.740 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds