Wall clock time and date at job start Sat Apr 11 2020 02:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 120.00136 * 2 1 4 4 C 1.34775 * 119.99821 * 180.02562 * 2 1 3 5 5 O 1.21553 * 120.00205 * 4.81735 * 4 2 1 6 6 C 1.47856 * 120.00081 * 184.83036 * 4 2 1 7 7 C 1.39713 * 120.07093 * 324.74802 * 6 4 2 8 8 C 1.38061 * 120.14191 * 180.02562 * 7 6 4 9 9 C 1.38097 * 120.30088 * 359.97281 * 8 7 6 10 10 C 1.39677 * 120.14211 * 359.97438 * 9 8 7 11 11 C 1.47856 * 120.07101 * 180.02562 * 10 9 8 12 12 O 1.21548 * 120.00053 * 218.18179 * 11 10 9 13 13 N 1.34780 * 119.99717 * 38.18828 * 11 10 9 14 14 C 1.46500 * 120.00439 * 356.01334 * 13 11 10 15 15 C 1.46505 * 119.99735 * 176.01068 * 13 11 10 16 16 C 1.53494 * 114.20489 * 119.99620 * 15 13 11 17 17 N 1.47071 * 87.98319 * 87.71974 * 16 15 13 18 18 C 1.36936 * 136.05996 * 207.08765 * 17 16 15 19 19 H 1.08005 * 119.99733 * 5.24298 * 18 17 16 20 20 C 1.38807 * 120.00159 * 185.25393 * 18 17 16 21 21 N 1.31615 * 120.00019 * 5.18749 * 20 18 17 22 22 Si 1.86800 * 120.00000 * 185.19213 * 20 18 17 23 23 H 1.48503 * 109.47196 * 264.99813 * 22 20 18 24 24 H 1.48498 * 109.47318 * 24.99730 * 22 20 18 25 25 H 1.48502 * 109.47042 * 144.99743 * 22 20 18 26 26 C 1.47065 * 87.88398 * 27.34325 * 17 16 15 27 27 C 1.39301 * 120.07848 * 144.97860 * 6 4 2 28 28 H 1.08998 * 109.47181 * 269.99633 * 1 2 3 29 29 H 1.09007 * 109.46811 * 29.99694 * 1 2 3 30 30 H 1.09001 * 109.47552 * 149.99039 * 1 2 3 31 31 H 1.08998 * 109.47567 * 269.40590 * 3 2 1 32 32 H 1.08999 * 109.46927 * 29.40590 * 3 2 1 33 33 H 1.08999 * 109.46986 * 149.40243 * 3 2 1 34 34 H 1.07997 * 119.92654 * 359.97438 * 7 6 4 35 35 H 1.07999 * 119.84907 * 179.97438 * 8 7 6 36 36 H 1.07991 * 119.92770 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.46964 * 274.94409 * 14 13 11 38 38 H 1.08998 * 109.46865 * 34.94478 * 14 13 11 39 39 H 1.08994 * 109.47063 * 154.94596 * 14 13 11 40 40 H 1.09001 * 113.28149 * 346.94084 * 15 13 11 41 41 H 1.09006 * 113.46900 * 332.94246 * 16 15 13 42 42 H 1.09004 * 113.47010 * 202.49774 * 16 15 13 43 43 H 0.97001 * 120.00006 * 180.02562 * 21 20 18 44 44 H 1.08995 * 113.47120 * 87.43581 * 26 17 16 45 45 H 1.09000 * 113.46602 * 217.88305 * 26 17 16 46 46 H 1.08002 * 120.14146 * 359.97438 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5343 -2.2180 -0.0894 6 6 3.6135 -1.1696 0.1073 7 6 4.3611 -0.1546 -0.4950 8 6 5.7381 -0.1556 -0.3957 9 6 6.3858 -1.1581 0.2991 10 6 5.6503 -2.1782 0.9069 11 6 6.3454 -3.2504 1.6508 12 8 5.9415 -4.3950 1.5864 13 7 7.4267 -2.9585 2.4005 14 6 7.9659 -1.5964 2.4095 15 6 8.0629 -4.0035 3.2065 16 6 9.5314 -4.2689 2.8472 17 7 9.9013 -3.2076 3.7957 18 6 10.9417 -2.3282 3.9349 19 1 11.7069 -2.2723 3.1747 20 6 11.0132 -1.5089 5.0532 21 7 10.1392 -1.6476 6.0275 22 14 12.3496 -0.2095 5.1751 23 1 13.5010 -0.7538 5.9388 24 1 12.7960 0.1711 3.8109 25 1 11.8142 0.9872 5.8726 26 6 8.6651 -3.5106 4.5326 27 6 4.2608 -2.1864 0.8055 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5140 31 1 2.3885 1.5781 -1.0276 32 1 1.6039 2.0310 0.5046 33 1 3.1453 1.1410 0.5231 34 1 3.8607 0.6321 -1.0401 35 1 6.3114 0.6311 -0.8635 36 1 7.4631 -1.1528 0.3733 37 1 8.6463 -1.4694 1.5674 38 1 7.1476 -0.8812 2.3265 39 1 8.5050 -1.4252 3.3412 40 1 7.4562 -4.9041 3.3010 41 1 9.7750 -4.0301 1.8119 42 1 9.8793 -5.2580 3.1453 43 1 10.1889 -1.0748 6.8087 44 1 8.7846 -4.2997 5.2749 45 1 8.1706 -2.6256 4.9331 46 1 3.6877 -2.9752 1.2701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044200049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:16 Heat of formation + Delta-G solvation = 37.764774 kcal Electronic energy + Delta-G solvation = -28452.110073 eV Core-core repulsion = 24537.749994 eV Total energy + Delta-G solvation = -3914.360079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.91377 -41.19210 -39.76690 -38.71359 -36.76299 -35.79929 -34.17044 -32.61080 -32.19838 -29.85884 -28.86579 -27.95967 -27.40956 -26.39485 -25.80041 -24.19826 -24.01760 -21.99916 -20.92784 -19.93481 -18.87968 -18.47556 -17.78470 -17.74414 -17.20620 -17.00025 -16.86526 -16.57035 -16.39631 -15.66924 -15.61729 -15.28943 -14.94813 -14.65854 -14.52834 -14.34814 -14.25313 -14.08746 -13.78429 -13.56986 -13.41397 -13.26084 -13.15834 -13.00444 -12.80594 -12.76515 -12.43540 -12.29090 -12.24165 -11.97897 -11.73625 -11.33159 -11.20207 -11.06921 -10.78239 -10.12254 -9.99016 -9.72483 -9.56301 -8.92303 -7.88451 -5.21528 -0.30688 0.01216 1.43177 1.50755 1.52374 1.61182 1.75960 1.82757 2.04609 2.49797 2.69529 3.30727 3.37595 3.39752 3.47599 3.75770 3.83102 3.93013 4.07107 4.27509 4.31231 4.33767 4.38067 4.42312 4.47828 4.48084 4.60944 4.72450 4.75653 4.79053 4.84098 4.87899 4.91272 4.92715 5.02227 5.12202 5.17862 5.20655 5.25742 5.31697 5.43287 5.46525 5.64805 5.75155 5.88518 6.19812 6.42645 6.91876 6.97725 7.02857 7.61467 8.60741 9.29526 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017334 B = 0.002847 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.894421 B = 9834.128699 C =10654.480995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.055 3.945 4 C 0.552 3.448 5 O -0.584 6.584 6 C -0.152 4.152 7 C -0.059 4.059 8 C -0.116 4.116 9 C -0.066 4.066 10 C -0.145 4.145 11 C 0.552 3.448 12 O -0.583 6.583 13 N -0.570 5.570 14 C 0.083 3.917 15 C 0.098 3.902 16 C 0.110 3.890 17 N -0.623 5.623 18 C -0.220 4.220 19 H 0.086 0.914 20 C -0.058 4.058 21 N -0.951 5.951 22 Si 0.974 3.026 23 H -0.296 1.296 24 H -0.263 1.263 25 H -0.294 1.294 26 C 0.156 3.844 27 C -0.032 4.032 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.181 0.819 35 H 0.181 0.819 36 H 0.153 0.847 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.248 0.752 44 H 0.031 0.969 45 H 0.045 0.955 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.324 12.639 -15.389 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C -0.086 4.086 4 C 0.341 3.659 5 O -0.466 6.466 6 C -0.155 4.155 7 C -0.077 4.077 8 C -0.134 4.134 9 C -0.084 4.084 10 C -0.148 4.148 11 C 0.342 3.658 12 O -0.464 6.464 13 N -0.299 5.299 14 C -0.059 4.059 15 C -0.007 4.007 16 C -0.016 4.016 17 N -0.350 5.350 18 C -0.348 4.348 19 H 0.104 0.896 20 C -0.251 4.251 21 N -0.599 5.599 22 Si 0.803 3.197 23 H -0.224 1.224 24 H -0.187 1.187 25 H -0.221 1.221 26 C 0.029 3.971 27 C -0.052 4.052 28 H 0.078 0.922 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.198 0.802 35 H 0.199 0.801 36 H 0.170 0.830 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.063 0.937 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.653 11.817 -15.315 24.267 hybrid contribution 0.797 -0.245 1.055 1.344 sum -13.857 11.572 -14.260 23.006 Atomic orbital electron populations 1.21836 0.77738 1.04108 1.02558 1.47771 1.08093 1.06442 1.72050 1.22661 0.98434 0.83609 1.03916 1.18604 0.87512 0.83759 0.75988 1.90770 1.70739 1.33142 1.51914 1.19721 0.92675 0.98479 1.04595 1.22331 0.94488 0.95837 0.95012 1.21563 0.94129 0.99158 0.98515 1.22195 1.01858 0.91428 0.92954 1.19643 0.93723 0.97589 1.03880 1.18783 0.79723 0.88317 0.78934 1.90726 1.67275 1.22960 1.65446 1.47299 1.27882 1.11373 1.43325 1.22200 0.98783 0.80610 1.04322 1.22483 0.93846 0.91005 0.93414 1.22899 0.91453 0.92483 0.94793 1.46049 1.23266 1.36560 1.29093 1.19233 1.01232 1.10633 1.03670 0.89587 1.25533 1.01211 1.02632 0.95749 1.70015 1.39218 1.41882 1.08813 0.85131 0.78205 0.78384 0.78008 1.22381 1.18688 1.22071 1.22298 0.85890 0.97029 0.91868 1.20997 0.92811 0.95986 0.95376 0.92245 0.87374 0.92354 0.89104 0.88535 0.89673 0.80219 0.80141 0.82985 0.91274 0.89911 0.90575 0.87980 0.92994 0.92850 0.94267 0.95174 0.93679 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.47 127.77 1.34 2.35 16 2 N -0.61 -9.71 3.27 -875.34 -2.87 -12.57 16 3 C 0.05 0.34 8.81 127.77 1.13 1.47 16 4 C 0.55 13.87 7.40 86.79 0.64 14.52 16 5 O -0.58 -20.29 16.37 -3.88 -0.06 -20.35 16 6 C -0.15 -3.50 5.36 -20.12 -0.11 -3.60 16 7 C -0.06 -0.80 7.47 22.58 0.17 -0.63 16 8 C -0.12 -1.52 10.02 22.19 0.22 -1.30 16 9 C -0.07 -1.37 7.58 22.58 0.17 -1.20 16 10 C -0.15 -4.25 5.25 -20.12 -0.11 -4.36 16 11 C 0.55 20.32 7.37 86.79 0.64 20.96 16 12 O -0.58 -25.52 16.41 -3.87 -0.06 -25.59 16 13 N -0.57 -20.80 3.12 -824.80 -2.57 -23.37 16 14 C 0.08 2.72 8.05 127.77 1.03 3.74 16 15 C 0.10 3.91 4.66 45.55 0.21 4.12 16 16 C 0.11 4.46 8.31 83.18 0.69 5.15 16 17 N -0.62 -29.91 2.47 -738.01 -1.82 -31.73 16 18 C -0.22 -11.33 10.19 84.03 0.86 -10.47 16 19 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 20 C -0.06 -3.05 5.50 84.86 0.47 -2.58 16 21 N -0.95 -54.14 11.73 21.65 0.25 -53.89 16 22 Si 0.97 42.59 29.56 68.60 2.03 44.62 16 23 H -0.30 -13.20 7.11 99.48 0.71 -12.49 16 24 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 25 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 26 C 0.16 7.23 6.28 83.27 0.52 7.75 16 27 C -0.03 -0.95 9.18 22.79 0.21 -0.74 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 0.57 8.07 -2.38 -0.02 0.55 16 30 H 0.06 1.02 7.36 -2.39 -0.02 1.00 16 31 H 0.09 0.11 7.13 -2.39 -0.02 0.09 16 32 H 0.10 0.24 8.07 -2.39 -0.02 0.22 16 33 H 0.08 0.60 5.30 -2.39 -0.01 0.59 16 34 H 0.18 1.00 4.99 -2.91 -0.01 0.99 16 35 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 36 H 0.15 2.94 5.19 -2.92 -0.02 2.93 16 37 H 0.07 2.03 6.81 -2.39 -0.02 2.01 16 38 H 0.08 2.25 5.88 -2.39 -0.01 2.24 16 39 H 0.08 3.20 5.11 -2.39 -0.01 3.19 16 40 H 0.10 4.05 7.32 -2.39 -0.02 4.03 16 41 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.04 2.30 6.71 -2.39 -0.02 2.28 16 46 H 0.11 3.80 7.98 -2.91 -0.02 3.78 16 Total: -1.00 -78.08 368.83 3.99 -74.09 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 1.01 Total: 13.63 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 8.08 Total: 35.17 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -7.00 Total: -121.56 kcal Atomic # 8 Polarization: -45.81 SS G_CDS: -0.13 Total: -45.94 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -78.08 3.99 -74.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044200049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.851 kcal (2) G-P(sol) polarization free energy of solvation -78.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds