Wall clock time and date at job start Sat Apr 11 2020 02:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35427 * 116.99755 * 2 1 4 4 N 1.32239 * 119.80244 * 0.31321 * 3 2 1 5 5 C 1.31879 * 121.80416 * 180.31596 * 4 3 2 6 6 C 1.38359 * 121.18128 * 359.65281 * 5 4 3 7 7 C 1.38330 * 119.46108 * 0.02562 * 6 5 4 8 8 C 1.39997 * 118.34894 * 359.97438 * 7 6 5 9 9 C 1.47520 * 120.59837 * 180.02562 * 8 7 6 10 10 O 1.21583 * 120.00159 * 180.02562 * 9 8 7 11 11 N 1.34782 * 120.00008 * 359.97438 * 9 8 7 12 12 C 1.46498 * 119.99888 * 180.02562 * 11 9 8 13 13 C 1.51223 * 111.06848 * 291.65982 * 12 11 9 14 14 C 1.55692 * 104.61320 * 276.12892 * 13 12 11 15 15 C 1.55029 * 105.77039 * 352.87300 * 14 13 12 16 16 C 1.50521 * 102.34536 * 335.48451 * 15 14 13 17 17 H 1.08999 * 108.14173 * 293.46568 * 16 15 14 18 18 N 1.42711 * 128.15269 * 161.02938 * 16 15 14 19 19 C 1.36936 * 127.10136 * 28.95398 * 18 16 15 20 20 H 1.08003 * 119.99941 * 342.47205 * 19 18 16 21 21 C 1.38808 * 119.99669 * 162.46238 * 19 18 16 22 22 N 1.31609 * 120.00339 * 329.62550 * 21 19 18 23 23 Si 1.86803 * 119.99574 * 149.89885 * 21 19 18 24 24 H 1.48495 * 109.47051 * 179.72587 * 23 21 19 25 25 H 1.48505 * 109.47166 * 299.72612 * 23 21 19 26 26 H 1.48498 * 109.47219 * 59.72631 * 23 21 19 27 27 C 1.49293 * 105.79542 * 209.21894 * 18 16 15 28 28 C 1.52124 * 111.08882 * 71.70036 * 12 11 9 29 29 H 1.09009 * 109.47117 * 299.99860 * 1 2 3 30 30 H 1.08997 * 109.47576 * 60.00035 * 1 2 3 31 31 H 1.09007 * 109.46913 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.40801 * 179.67425 * 5 4 3 33 33 H 1.08005 * 120.26899 * 180.02562 * 6 5 4 34 34 H 1.08000 * 120.82704 * 180.02562 * 7 6 5 35 35 H 0.97001 * 120.00061 * 0.02562 * 11 9 8 36 36 H 1.09002 * 110.40555 * 34.91063 * 13 12 11 37 37 H 1.08999 * 110.41235 * 157.22784 * 13 12 11 38 38 H 1.09003 * 110.15842 * 111.86262 * 14 13 12 39 39 H 1.08991 * 110.16041 * 233.56077 * 14 13 12 40 40 H 1.09004 * 110.93434 * 217.05937 * 15 14 13 41 41 H 1.09005 * 110.45545 * 93.68887 * 15 14 13 42 42 H 0.97004 * 120.00334 * 354.15693 * 22 21 19 43 43 H 1.09000 * 110.04894 * 127.65739 * 27 18 16 44 44 H 1.08996 * 110.04845 * 249.14054 * 27 18 16 45 45 H 1.09000 * 111.15143 * 191.84970 * 28 12 11 46 46 H 1.09001 * 111.15023 * 316.03352 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0063 5 6 1.8769 3.5085 0.0003 6 6 3.2524 3.6576 -0.0056 7 6 4.0586 2.5335 -0.0059 8 6 3.4448 1.2753 0.0005 9 6 4.2569 0.0437 0.0011 10 8 3.7125 -1.0435 0.0062 11 7 5.6023 0.1236 -0.0051 12 6 6.4087 -1.0995 -0.0051 13 6 6.2789 -1.8362 1.3092 14 6 7.3097 -1.1460 2.2499 15 6 8.1055 -0.1627 1.3537 16 6 7.9498 -0.7746 -0.0127 17 1 8.4771 -1.7285 -0.0195 18 7 8.1375 -0.1531 -1.2836 19 6 8.9799 0.8853 -1.5789 20 1 9.3746 1.5028 -0.7856 21 6 9.3266 1.1440 -2.8978 22 7 9.3871 0.1584 -3.7679 23 14 9.7149 2.8902 -3.4361 24 1 10.0600 2.8978 -4.8803 25 1 8.5293 3.7543 -3.2059 26 1 10.8639 3.4066 -2.6498 27 6 7.2211 -0.8645 -2.2232 28 6 6.3320 -1.8057 -1.3503 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.2483 4.3866 0.0005 33 1 3.6931 4.6436 -0.0100 34 1 5.1348 2.6243 -0.0101 35 1 6.0367 0.9909 -0.0095 36 1 5.2698 -1.7288 1.7070 37 1 6.5256 -2.8901 1.1802 38 1 6.7917 -0.5997 3.0383 39 1 7.9777 -1.8892 2.6850 40 1 9.1543 -0.1287 1.6487 41 1 7.6595 0.8313 1.3892 42 1 9.2729 -0.7581 -3.4714 43 1 6.5975 -0.1449 -2.7535 44 1 7.7993 -1.4544 -2.9343 45 1 6.7533 -2.8093 -1.2922 46 1 5.3079 -1.8328 -1.7224 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992158321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:55:28 Heat of formation + Delta-G solvation = 11.072896 kcal Electronic energy + Delta-G solvation = -29956.708001 eV Core-core repulsion = 26041.190475 eV Total energy + Delta-G solvation = -3915.517526 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04529 -40.28483 -38.00200 -37.82672 -34.73176 -33.45495 -32.55348 -31.64898 -30.89987 -29.78062 -27.33871 -26.84433 -26.08967 -24.58882 -23.90480 -22.98508 -21.19513 -20.60764 -19.70709 -18.85402 -18.48750 -17.48402 -17.10787 -17.02413 -16.11493 -15.70487 -15.20850 -14.87508 -14.61695 -14.53269 -14.33311 -14.09362 -13.75472 -13.69397 -13.28946 -13.22738 -12.76138 -12.69382 -12.60510 -12.02089 -11.82760 -11.80987 -11.46975 -11.29936 -10.92475 -10.83554 -10.74097 -10.50570 -10.33320 -10.15240 -10.06060 -10.04117 -10.03081 -9.69775 -9.54451 -9.23224 -8.69253 -8.47618 -8.41679 -6.97585 -6.14128 -3.20196 0.63802 1.14266 3.00558 3.09222 3.45175 3.46595 3.48519 3.66928 3.86495 4.15035 4.42856 4.58536 4.67728 4.77012 4.89977 5.07308 5.11548 5.17925 5.20841 5.22712 5.32217 5.38135 5.52310 5.53842 5.66836 5.69219 5.74057 5.78612 5.90506 5.95633 5.99606 6.12442 6.19914 6.23941 6.26878 6.36556 6.42898 6.52587 6.64537 6.79901 6.93927 7.06426 7.13411 7.16832 7.61907 7.76491 7.97903 8.40371 8.63680 8.98361 9.75398 10.37807 11.16587 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011542 B = 0.004605 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.407469 B = 6078.535891 C = 7280.155433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.269 6.269 3 C 0.368 3.632 4 N -0.549 5.549 5 C 0.160 3.840 6 C -0.219 4.219 7 C -0.007 4.007 8 C -0.203 4.203 9 C 0.561 3.439 10 O -0.524 6.524 11 N -0.690 5.690 12 C 0.134 3.866 13 C -0.111 4.111 14 C -0.116 4.116 15 C -0.112 4.112 16 C 0.159 3.841 17 H 0.022 0.978 18 N -0.582 5.582 19 C -0.344 4.344 20 H 0.067 0.933 21 C -0.020 4.020 22 N -0.907 5.907 23 Si 1.058 2.942 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.293 1.293 27 C 0.143 3.857 28 C -0.126 4.126 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.270 0.730 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 3.760 10.515 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.173 6.173 3 C 0.188 3.812 4 N -0.273 5.273 5 C 0.003 3.997 6 C -0.239 4.239 7 C -0.032 4.032 8 C -0.209 4.209 9 C 0.347 3.653 10 O -0.401 6.401 11 N -0.342 5.342 12 C 0.047 3.953 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.150 4.150 16 C 0.049 3.951 17 H 0.039 0.961 18 N -0.306 5.306 19 C -0.471 4.471 20 H 0.084 0.916 21 C -0.223 4.223 22 N -0.547 5.547 23 Si 0.887 3.113 24 H -0.212 1.212 25 H -0.222 1.222 26 H -0.220 1.220 27 C 0.018 3.982 28 C -0.165 4.165 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.115 0.885 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.054 0.946 44 H 0.061 0.939 45 H 0.090 0.910 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.051 3.618 9.157 17.157 hybrid contribution 0.560 -0.154 1.223 1.354 sum -13.491 3.464 10.380 17.371 Atomic orbital electron populations 1.22922 0.77896 1.03107 1.02079 1.86550 1.21991 1.23017 1.85760 1.19850 0.88155 0.85036 0.88175 1.67445 1.40405 0.98705 1.20776 1.22603 0.93051 0.93673 0.90386 1.21941 0.94683 1.00019 1.07287 1.21782 1.01090 0.90598 0.89779 1.20186 0.91615 0.95428 1.13668 1.17693 0.82154 0.88056 0.77388 1.90780 1.71779 1.28109 1.49433 1.45625 1.04707 1.09877 1.73944 1.21502 0.94466 0.85484 0.93889 1.21861 0.99632 0.99038 0.94457 1.22604 0.97186 0.98052 0.97617 1.21576 0.99851 0.98567 0.95042 1.20799 0.90694 0.95290 0.88300 0.96126 1.43656 1.44663 1.39311 1.02983 1.19630 1.26408 1.06029 0.95035 0.91563 1.25646 0.98487 1.05070 0.93085 1.70786 1.45193 1.00419 1.38281 0.83631 0.75913 0.75496 0.76233 1.21153 1.22197 1.22006 1.22133 0.90423 0.93304 0.92300 1.22539 1.00527 0.98382 0.95050 0.92450 0.92394 0.88518 0.82028 0.83855 0.83518 0.76339 0.91043 0.91083 0.92200 0.91861 0.91697 0.91903 0.91847 0.94586 0.93892 0.91029 0.90985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.38 101.05 1.05 1.44 16 2 O -0.27 -4.26 8.58 -39.74 -0.34 -4.60 16 3 C 0.37 5.64 7.51 -16.61 -0.12 5.52 16 4 N -0.55 -7.21 9.21 -12.98 -0.12 -7.33 16 5 C 0.16 1.64 11.17 -17.49 -0.20 1.45 16 6 C -0.22 -2.23 10.09 -39.50 -0.40 -2.63 16 7 C -0.01 -0.08 9.64 -38.89 -0.37 -0.46 16 8 C -0.20 -3.14 5.90 -104.69 -0.62 -3.76 16 9 C 0.56 9.97 7.08 -12.47 -0.09 9.88 16 10 O -0.52 -10.59 13.34 -16.48 -0.22 -10.80 16 11 N -0.69 -11.93 4.30 -47.61 -0.20 -12.14 16 12 C 0.13 2.42 0.41 -130.71 -0.05 2.37 16 13 C -0.11 -1.76 6.05 -26.19 -0.16 -1.92 16 14 C -0.12 -1.65 6.90 -24.22 -0.17 -1.82 16 15 C -0.11 -1.86 6.37 -26.90 -0.17 -2.03 16 16 C 0.16 3.16 2.65 -68.71 -0.18 2.97 16 17 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 18 N -0.58 -13.79 2.98 -162.73 -0.49 -14.27 16 19 C -0.34 -9.06 10.01 -15.06 -0.15 -9.21 16 20 H 0.07 1.73 7.99 -52.48 -0.42 1.31 16 21 C -0.02 -0.54 5.15 -17.44 -0.09 -0.63 16 22 N -0.91 -26.73 13.02 55.49 0.72 -26.00 16 23 Si 1.06 24.35 30.01 -169.99 -5.10 19.24 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 C 0.14 3.29 5.83 -0.81 0.00 3.29 16 28 C -0.13 -2.46 6.22 -25.49 -0.16 -2.62 16 29 H 0.06 0.58 8.10 -51.92 -0.42 0.16 16 30 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.15 1.71 6.52 -52.49 -0.34 1.37 16 35 H 0.40 6.75 5.86 -40.82 -0.24 6.51 16 36 H 0.07 1.20 6.84 -51.93 -0.36 0.84 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.06 1.02 7.31 -51.93 -0.38 0.64 16 42 H 0.27 8.02 6.09 -40.82 -0.25 7.77 16 43 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.04 1.08 6.15 -51.93 -0.32 0.76 16 45 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.07 1.45 7.17 -51.93 -0.37 1.07 16 LS Contribution 365.36 15.07 5.51 5.51 Total: -1.00 -32.65 365.36 -8.66 -41.32 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.53 Total: 7.24 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -1.89 Total: 1.84 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.09 Total: -59.75 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.56 Total: -15.40 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.10 Total: 19.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.65 -8.66 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992158321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.391 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds