Wall clock time and date at job start Sat Apr 11 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86794 * 119.99790 * 2 1 4 4 H 1.48503 * 109.47182 * 264.97069 * 3 2 1 5 5 H 1.48503 * 109.47275 * 24.97097 * 3 2 1 6 6 H 1.48497 * 109.47143 * 144.97151 * 3 2 1 7 7 C 1.38818 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99970 * 346.09404 * 7 2 1 9 9 N 1.36935 * 119.99540 * 166.08643 * 7 2 1 10 10 C 1.47425 * 125.64288 * 142.97883 * 9 7 2 11 11 C 1.54904 * 104.83215 * 155.90761 * 10 9 7 12 12 C 1.55154 * 101.58490 * 37.00757 * 11 10 9 13 13 H 1.09000 * 110.71998 * 83.03531 * 12 11 10 14 14 C 1.53000 * 110.72400 * 206.13692 * 12 11 10 15 15 N 1.46504 * 109.47203 * 182.55732 * 14 12 11 16 16 C 1.34772 * 119.99973 * 180.02562 * 15 14 12 17 17 O 1.21699 * 120.00247 * 5.22826 * 16 15 14 18 18 C 1.46677 * 120.00295 * 185.23032 * 16 15 14 19 19 C 1.37878 * 126.22660 * 5.34107 * 18 16 15 20 20 C 1.39845 * 107.07994 * 180.23358 * 19 18 16 21 21 C 1.35448 * 107.86578 * 359.75964 * 20 19 18 22 22 N 1.35539 * 108.87324 * 0.02562 * 21 20 19 23 23 C 1.46499 * 125.67747 * 179.97438 * 22 21 20 24 24 C 1.54263 * 110.03538 * 52.68155 * 23 22 21 25 25 C 1.54966 * 104.16159 * 217.13654 * 24 23 22 26 26 C 1.54895 * 102.77570 * 37.88643 * 25 24 23 27 27 C 1.53876 * 110.03083 * 295.46043 * 23 22 21 28 28 C 1.47315 * 125.61845 * 323.19971 * 9 7 2 29 29 H 0.96996 * 119.99897 * 359.97438 * 1 2 3 30 30 H 1.08999 * 110.36903 * 37.06355 * 10 9 7 31 31 H 1.09007 * 110.45860 * 274.79311 * 10 9 7 32 32 H 1.09002 * 111.00224 * 278.93806 * 11 10 9 33 33 H 1.09003 * 111.03860 * 155.09660 * 11 10 9 34 34 H 1.08998 * 109.46870 * 62.55915 * 14 12 11 35 35 H 1.08998 * 109.47094 * 302.55641 * 14 12 11 36 36 H 0.96997 * 120.00027 * 359.97438 * 15 14 12 37 37 H 1.07991 * 126.46428 * 359.97438 * 19 18 16 38 38 H 1.07992 * 126.06455 * 179.73344 * 20 19 18 39 39 H 1.07997 * 125.56578 * 179.97438 * 21 20 19 40 40 H 1.09009 * 110.01447 * 174.07403 * 23 22 21 41 41 H 1.08997 * 110.48581 * 335.78437 * 24 23 22 42 42 H 1.08999 * 110.48715 * 98.42443 * 24 23 22 43 43 H 1.09005 * 110.72003 * 279.57765 * 25 24 23 44 44 H 1.08988 * 110.76809 * 156.21877 * 25 24 23 45 45 H 1.08994 * 110.48553 * 203.40950 * 26 25 24 46 46 H 1.08992 * 110.48555 * 80.76539 * 26 25 24 47 47 H 1.08996 * 110.03490 * 238.57198 * 27 23 22 48 48 H 1.09004 * 110.03347 * 359.95529 * 27 23 22 49 49 H 1.09001 * 110.06355 * 61.68651 * 28 9 7 50 50 H 1.08994 * 109.85086 * 300.42280 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.6040 1.9851 -1.3947 5 1 1.3985 2.6810 0.5911 6 1 3.4905 1.4732 0.8036 7 6 2.0103 -1.2022 0.0005 8 1 1.4941 -2.1237 0.2257 9 7 3.3495 -1.2196 -0.2846 10 6 4.3522 -2.0930 0.3521 11 6 5.5034 -2.1929 -0.6796 12 6 5.5196 -0.7574 -1.2682 13 1 6.0919 -0.0850 -0.6291 14 6 6.0849 -0.7616 -2.6900 15 7 6.1446 0.6120 -3.1958 16 6 6.6122 0.8535 -4.4366 17 8 6.8952 -0.0744 -5.1715 18 6 6.7799 2.2345 -4.9013 19 6 6.5995 3.3753 -4.1482 20 6 6.8582 4.4652 -4.9853 21 6 7.1901 3.9819 -6.2063 22 7 7.1489 2.6277 -6.1678 23 6 7.4429 1.7317 -7.2889 24 6 8.8180 2.0785 -7.8960 25 6 8.6240 1.8682 -9.4190 26 6 7.1849 2.3898 -9.6562 27 6 6.4049 1.9291 -8.4075 28 6 4.0270 -0.3653 -1.2753 29 1 -0.4850 0.8400 0.0004 30 1 3.9289 -3.0788 0.5448 31 1 4.7116 -1.6474 1.2796 32 1 5.2743 -2.9286 -1.4505 33 1 6.4490 -2.4249 -0.1895 34 1 5.4406 -1.3587 -3.3353 35 1 7.0874 -1.1894 -2.6811 36 1 5.8470 1.3476 -2.6380 37 1 6.3088 3.4190 -3.1091 38 1 6.8028 5.5074 -4.7075 39 1 7.4450 4.5782 -7.0699 40 1 7.4348 0.6955 -6.9505 41 1 9.0779 3.1157 -7.6844 42 1 9.5852 1.4061 -7.5119 43 1 8.6988 0.8113 -9.6750 44 1 9.3461 2.4560 -9.9854 45 1 6.7613 1.9444 -10.5564 46 1 7.1805 3.4772 -9.7291 47 1 5.8936 0.9886 -8.6126 48 1 5.6819 2.6909 -8.1159 49 1 3.9181 0.6840 -1.0009 50 1 3.6030 -0.5379 -2.2644 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028893724.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:56:08 Heat of formation + Delta-G solvation = 27.476435 kcal Electronic energy + Delta-G solvation = -28734.547756 eV Core-core repulsion = 24955.574636 eV Total energy + Delta-G solvation = -3778.973120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.69615 -39.30738 -37.99572 -37.82000 -34.76125 -32.65629 -32.02779 -30.72393 -29.46951 -29.17569 -28.38496 -27.49234 -25.70845 -23.83336 -22.39557 -21.67026 -21.12372 -20.51840 -20.27666 -20.04448 -19.11470 -17.89776 -16.99261 -16.26516 -16.10665 -16.01566 -15.65105 -15.31547 -14.78665 -14.52692 -14.15085 -13.99888 -13.76866 -13.70876 -13.37063 -13.22219 -12.80844 -12.72830 -12.51012 -12.47202 -12.05384 -11.96064 -11.74213 -11.62078 -11.57642 -11.54332 -11.27763 -11.15185 -11.02431 -10.88872 -10.65139 -10.54812 -10.27278 -9.87423 -9.83377 -9.51305 -9.07092 -8.84013 -8.57547 -8.29553 -6.81196 -5.98403 -3.44711 1.40032 2.51140 2.63901 3.30689 3.33239 3.37715 3.42598 3.47998 4.08466 4.16636 4.48234 4.51094 4.67242 4.81786 4.89261 4.92608 4.99944 5.03298 5.03940 5.07257 5.10569 5.18651 5.26727 5.32130 5.33837 5.39686 5.44274 5.46834 5.63068 5.65340 5.73812 5.81164 5.82718 5.86933 5.87277 5.95812 6.04928 6.10299 6.13235 6.29333 6.40091 6.50060 6.63999 6.67913 6.75498 6.82174 6.91844 7.12649 7.51782 7.92292 8.18701 8.34201 8.84008 9.65504 10.23223 11.17924 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.002883 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.684815 B = 9710.386371 C =10396.629222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.030 3.970 3 Si 0.896 3.104 4 H -0.283 1.283 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.610 5.610 10 C 0.129 3.871 11 C -0.121 4.121 12 C -0.117 4.117 13 H 0.080 0.920 14 C 0.135 3.865 15 N -0.713 5.713 16 C 0.589 3.411 17 O -0.555 6.555 18 C -0.050 4.050 19 C -0.141 4.141 20 C -0.208 4.208 21 C 0.015 3.985 22 N -0.399 5.399 23 C 0.108 3.892 24 C -0.131 4.131 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.135 4.135 28 C 0.124 3.876 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.404 0.596 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.164 0.836 40 H 0.134 0.866 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.022 0.978 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.792 7.028 -15.967 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.170 4.170 3 Si 0.728 3.272 4 H -0.211 1.211 5 H -0.231 1.231 6 H -0.200 1.200 7 C -0.376 4.376 8 H 0.102 0.898 9 N -0.337 5.337 10 C 0.004 3.996 11 C -0.160 4.160 12 C -0.137 4.137 13 H 0.098 0.902 14 C 0.012 3.988 15 N -0.364 5.364 16 C 0.377 3.623 17 O -0.435 6.435 18 C -0.164 4.164 19 C -0.168 4.168 20 C -0.231 4.231 21 C -0.121 4.121 22 N -0.071 5.071 23 C 0.007 3.993 24 C -0.169 4.169 25 C -0.161 4.161 26 C -0.161 4.161 27 C -0.173 4.173 28 C 0.000 4.000 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.239 0.761 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.181 0.819 40 H 0.151 0.849 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.093 0.907 49 H 0.040 0.960 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 19.810 6.156 -16.716 26.641 hybrid contribution 0.129 1.581 0.353 1.625 sum 19.939 7.737 -16.363 26.929 Atomic orbital electron populations 1.69775 1.05770 1.26783 1.52791 1.25475 0.95274 0.98005 0.98244 0.86672 0.79111 0.83803 0.77625 1.21090 1.23095 1.20015 1.18590 0.80703 0.93959 1.44316 0.89836 1.44713 1.04094 1.44236 1.40662 1.21686 0.88999 0.95256 0.93644 1.22721 0.99051 0.94890 0.99306 1.22466 0.97616 0.99047 0.94554 0.90185 1.21446 1.01181 0.81911 0.94240 1.45717 1.64677 1.10522 1.15464 1.16976 0.77015 0.86534 0.81734 1.90698 1.52635 1.45595 1.54610 1.20069 1.15548 0.94068 0.86708 1.21397 1.04740 0.91053 0.99561 1.20796 1.10012 0.99066 0.93276 1.21844 1.07382 0.82748 1.00087 1.44176 1.48706 1.05856 1.08406 1.22713 0.95036 0.96440 0.85119 1.22777 0.95787 1.02535 0.95834 1.22494 0.96845 1.01781 0.94942 1.22366 0.95254 1.00882 0.97600 1.22568 0.97716 1.02873 0.94180 1.21790 0.89528 0.94590 0.94138 0.92584 0.93283 0.95787 0.90996 0.91334 0.90757 0.91296 0.76067 0.83969 0.84128 0.81915 0.84864 0.90654 0.90580 0.90872 0.90940 0.91058 0.91431 0.90291 0.90740 0.96013 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.97 55.49 0.78 -27.44 16 2 C 0.03 0.89 5.47 -17.43 -0.10 0.79 16 3 Si 0.90 22.75 24.61 -169.99 -4.18 18.57 16 4 H -0.28 -6.91 6.86 56.52 0.39 -6.52 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.78 7.06 56.52 0.40 -6.38 16 7 C -0.25 -7.11 10.53 -15.06 -0.16 -7.26 16 8 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.61 -14.74 2.96 -169.83 -0.50 -15.25 16 10 C 0.13 2.52 7.23 -2.53 -0.02 2.50 16 11 C -0.12 -1.84 6.54 -24.59 -0.16 -2.00 16 12 C -0.12 -1.87 2.98 -88.78 -0.26 -2.13 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 14 C 0.14 1.97 5.01 -4.04 -0.02 1.95 16 15 N -0.71 -10.27 5.40 -61.62 -0.33 -10.60 16 16 C 0.59 9.04 7.77 -12.86 -0.10 8.94 16 17 O -0.55 -9.60 14.39 5.19 0.07 -9.52 16 18 C -0.05 -0.70 6.88 -81.98 -0.56 -1.26 16 19 C -0.14 -1.75 10.35 -39.11 -0.40 -2.15 16 20 C -0.21 -2.25 10.81 -39.98 -0.43 -2.68 16 21 C 0.01 0.15 9.83 -16.91 -0.17 -0.02 16 22 N -0.40 -4.75 2.60 -104.62 -0.27 -5.03 16 23 C 0.11 1.15 3.52 -66.81 -0.24 0.91 16 24 C -0.13 -1.07 6.46 -25.03 -0.16 -1.23 16 25 C -0.12 -0.79 6.91 -24.69 -0.17 -0.96 16 26 C -0.12 -0.82 6.83 -25.07 -0.17 -0.99 16 27 C -0.14 -1.24 6.43 -25.61 -0.16 -1.40 16 28 C 0.12 2.62 5.39 -2.90 -0.02 2.61 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.18 8.00 -51.93 -0.42 0.77 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.40 5.42 7.35 -40.82 -0.30 5.12 16 37 H 0.14 1.56 7.49 -52.49 -0.39 1.17 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.16 1.18 7.90 -52.49 -0.41 0.77 16 40 H 0.13 1.75 5.39 -51.92 -0.28 1.47 16 41 H 0.07 0.58 6.99 -51.93 -0.36 0.22 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.38 8.14 -51.94 -0.42 -0.05 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.74 7.65 -51.93 -0.40 0.34 16 49 H 0.02 0.50 3.46 -51.93 -0.18 0.32 16 50 H 0.04 0.90 7.73 -51.93 -0.40 0.50 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -33.51 387.91 -10.11 -43.62 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.21 Total: 4.19 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.30 Total: -4.38 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.33 Total: -58.31 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.18 Total: 18.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.51 -10.11 -43.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028893724.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.098 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds