Wall clock time and date at job start Sat Apr 11 2020 02:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 109.47451 * 34.99922 * 10 9 7 12 12 C 1.53001 * 109.47114 * 155.00305 * 10 9 7 13 13 C 1.53000 * 109.47146 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46849 * 299.99722 * 13 12 10 15 15 H 1.09001 * 109.47072 * 300.00108 * 14 13 12 16 16 N 1.46499 * 109.46770 * 180.02562 * 14 13 12 17 17 C 1.34776 * 119.99807 * 155.00441 * 16 14 13 18 18 O 1.21629 * 119.99952 * 359.97438 * 17 16 14 19 19 C 1.47269 * 120.00055 * 179.97438 * 17 16 14 20 20 C 1.46683 * 126.93756 * 359.68453 * 19 17 16 21 21 C 1.34485 * 106.32788 * 179.88956 * 20 19 17 22 22 N 1.36447 * 108.85864 * 0.37367 * 21 20 19 23 23 H 0.97001 * 124.85137 * 179.77414 * 22 21 20 24 24 C 1.34659 * 110.29523 * 359.74865 * 22 21 20 25 25 C 1.50699 * 125.79700 * 180.02562 * 24 22 21 26 26 C 1.53776 * 113.61639 * 37.47888 * 25 24 22 27 27 C 1.53781 * 87.08188 * 220.01639 * 26 25 24 28 28 C 1.53777 * 113.61517 * 299.97498 * 25 24 22 29 29 C 1.53001 * 109.47020 * 60.00201 * 14 13 12 30 30 C 1.53000 * 109.47146 * 299.99617 * 29 14 13 31 31 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 33 33 H 1.09000 * 109.46532 * 299.99737 * 12 10 9 34 34 H 1.09001 * 109.47274 * 59.99509 * 12 10 9 35 35 H 1.09002 * 109.46869 * 59.99494 * 13 12 10 36 36 H 1.08996 * 109.47150 * 179.97438 * 13 12 10 37 37 H 0.96996 * 120.00063 * 334.99290 * 16 14 13 38 38 H 1.08002 * 126.83869 * 0.02562 * 20 19 17 39 39 H 1.08010 * 125.57443 * 180.08581 * 21 20 19 40 40 H 1.09003 * 112.84634 * 168.77943 * 25 24 22 41 41 H 1.09003 * 113.61442 * 334.56390 * 26 25 24 42 42 H 1.09002 * 113.61546 * 105.47061 * 26 25 24 43 43 H 1.09006 * 113.61146 * 270.88734 * 27 26 25 44 44 H 1.08996 * 113.61775 * 139.97901 * 27 26 25 45 45 H 1.08998 * 113.61545 * 254.53021 * 28 25 24 46 46 H 1.09001 * 113.61543 * 25.35538 * 28 25 24 47 47 H 1.08993 * 109.47103 * 59.99783 * 29 14 13 48 48 H 1.08998 * 109.46973 * 180.02562 * 29 14 13 49 49 H 1.09001 * 109.47372 * 300.00354 * 30 29 14 50 50 H 1.08996 * 109.47150 * 180.02562 * 30 29 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9689 -3.5474 0.6024 12 6 1.1810 -4.7489 0.6288 13 6 1.9459 -6.0740 0.6353 14 6 2.3093 -6.4601 -0.8000 15 1 1.3984 -6.5691 -1.3886 16 7 3.0411 -7.7292 -0.7938 17 6 3.0318 -8.5177 -1.8868 18 8 2.4154 -8.1759 -2.8780 19 6 3.7679 -9.7932 -1.8808 20 6 4.5614 -10.3479 -0.7789 21 6 5.0461 -11.5236 -1.2165 22 7 4.6203 -11.7271 -2.4967 23 1 4.8378 -12.5032 -3.0364 24 6 3.8544 -10.6970 -2.9036 25 6 3.2030 -10.5632 -4.2559 26 6 2.6750 -11.8929 -4.8197 27 6 3.1951 -11.4278 -6.1901 28 6 4.2036 -10.5559 -5.4236 29 6 3.1865 -5.3679 -1.4153 30 6 2.4216 -4.0428 -1.4217 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3880 0.0068 33 1 0.9218 -4.4736 1.6511 34 1 0.2703 -4.8583 0.0400 35 1 2.8568 -5.9648 1.2239 36 1 1.3211 -6.8520 1.0741 37 1 3.5325 -8.0018 -0.0032 38 1 4.7225 -9.9020 0.1915 39 1 5.6739 -12.1947 -0.6490 40 1 2.4774 -9.7509 -4.2976 41 1 3.1937 -12.7689 -4.4302 42 1 1.5900 -11.9866 -4.7733 43 1 2.4663 -10.8526 -6.7614 44 1 3.6598 -12.2226 -6.7735 45 1 4.3527 -9.5704 -5.8648 46 1 5.1408 -11.0651 -5.1988 47 1 4.0973 -5.2588 -0.8266 48 1 3.4450 -5.6427 -2.4379 49 1 1.5107 -4.1518 -2.0104 50 1 3.0464 -3.2648 -1.8605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034735685.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:56:38 Heat of formation + Delta-G solvation = 18.102797 kcal Electronic energy + Delta-G solvation = -28149.681722 eV Core-core repulsion = 24370.302130 eV Total energy + Delta-G solvation = -3779.379592 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70219 -39.47776 -38.51244 -37.66484 -34.69607 -32.96009 -31.40155 -30.35190 -30.27246 -30.00844 -27.32673 -25.98445 -25.40249 -23.75770 -22.62904 -22.14686 -21.28180 -20.61185 -19.86311 -19.70235 -19.08169 -18.13822 -16.99461 -16.19964 -15.95053 -15.72500 -15.11294 -14.98812 -14.83921 -14.27972 -14.03529 -13.68765 -13.61909 -13.47194 -13.45384 -12.93966 -12.90842 -12.87517 -12.58996 -12.45491 -12.42527 -11.90843 -11.70461 -11.34483 -11.08148 -10.94581 -10.79739 -10.76788 -10.67015 -10.64411 -10.57110 -10.09243 -10.00095 -9.69652 -9.65708 -9.48492 -9.11659 -8.82667 -8.73954 -8.38059 -6.87474 -5.70107 -2.98078 1.59880 2.18725 2.82426 3.47397 3.48152 3.53037 3.55182 3.58075 4.22366 4.30006 4.35127 4.61757 4.64606 4.70235 4.82000 4.93929 5.10261 5.17129 5.18070 5.20858 5.32823 5.40073 5.50047 5.53269 5.59233 5.60126 5.67422 5.70042 5.73567 5.79179 5.84308 5.90344 5.99071 5.99155 6.14248 6.16609 6.35031 6.39097 6.45517 6.50961 6.60469 6.68073 6.70516 6.81386 6.84422 7.08444 7.14369 7.24250 7.74471 7.77094 8.47270 8.49059 9.59853 10.19349 10.53883 11.52870 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.021312 B = 0.002145 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.526073 B =13051.820179 C =13645.525031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.017 4.017 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.233 4.233 8 H 0.070 0.930 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.120 4.120 13 C -0.119 4.119 14 C 0.148 3.852 15 H 0.087 0.913 16 N -0.721 5.721 17 C 0.590 3.410 18 O -0.550 6.550 19 C -0.229 4.229 20 C -0.168 4.168 21 C -0.018 4.018 22 N -0.552 5.552 23 H 0.413 0.587 24 C 0.119 3.881 25 C -0.056 4.056 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.133 4.133 29 C -0.123 4.123 30 C -0.131 4.131 31 H 0.254 0.746 32 H 0.383 0.617 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.396 0.604 38 H 0.145 0.855 39 H 0.168 0.832 40 H 0.139 0.861 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.120 -30.225 -5.037 32.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.088 0.912 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.159 4.159 13 C -0.157 4.157 14 C 0.044 3.956 15 H 0.105 0.895 16 N -0.370 5.370 17 C 0.378 3.622 18 O -0.430 6.430 19 C -0.239 4.239 20 C -0.193 4.193 21 C -0.145 4.145 22 N -0.147 5.147 23 H 0.249 0.751 24 C 0.001 3.999 25 C -0.075 4.075 26 C -0.176 4.176 27 C -0.177 4.177 28 C -0.171 4.171 29 C -0.162 4.162 30 C -0.172 4.172 31 H 0.063 0.937 32 H 0.217 0.783 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.230 0.770 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.157 0.843 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.847 -29.925 -5.751 32.024 hybrid contribution 0.678 0.412 0.289 0.845 sum 10.525 -29.512 -5.462 31.806 Atomic orbital electron populations 1.69669 1.05071 1.25401 1.58120 1.24736 0.95507 0.97631 1.03344 0.86145 0.78785 0.84337 0.77124 1.20607 1.21948 1.21975 1.19296 0.90992 0.84173 1.42022 0.91193 1.42451 1.05799 0.99841 1.88544 1.20245 0.94253 0.85923 0.92846 0.93647 1.21747 0.98947 0.93549 1.01650 1.21745 1.00743 0.98128 0.95101 1.21058 0.95444 0.81892 0.97237 0.89537 1.45917 1.53404 1.21483 1.16216 1.17337 0.79553 0.82497 0.82775 1.90708 1.44850 1.74288 1.33151 1.20217 1.09690 0.98094 0.95890 1.22043 1.02086 0.96077 0.99054 1.21695 1.06290 1.00567 0.85989 1.41510 1.40679 1.19141 1.13349 0.75074 1.20071 0.95624 0.88279 0.95931 1.21653 0.98661 1.00263 0.86946 1.22995 1.01648 0.96339 0.96662 1.22822 0.99082 0.99651 0.96175 1.22962 0.96895 1.01112 0.96137 1.21890 0.98534 0.95331 1.00463 1.22212 0.99753 0.94584 1.00691 0.93654 0.78328 0.91467 0.92000 0.91671 0.91940 0.77018 0.83758 0.81457 0.84290 0.90986 0.90667 0.89501 0.91335 0.90537 0.90719 0.92448 0.92366 0.92529 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.69 13.06 55.49 0.72 -27.97 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.90 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.23 -6.58 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.51 5.12 -53.42 -0.27 -18.78 16 10 C 0.18 3.56 2.77 -67.93 -0.19 3.37 16 11 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 12 C -0.12 -1.99 5.39 -26.73 -0.14 -2.14 16 13 C -0.12 -1.56 5.39 -26.73 -0.14 -1.70 16 14 C 0.15 2.10 2.45 -67.93 -0.17 1.93 16 15 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 16 N -0.72 -8.92 5.07 -54.93 -0.28 -9.20 16 17 C 0.59 8.32 7.77 -12.59 -0.10 8.22 16 18 O -0.55 -9.46 14.27 5.25 0.07 -9.38 16 19 C -0.23 -2.66 6.29 -103.35 -0.65 -3.31 16 20 C -0.17 -1.48 10.56 -37.50 -0.40 -1.87 16 21 C -0.02 -0.12 11.89 -16.82 -0.20 -0.32 16 22 N -0.55 -3.78 5.72 -9.11 -0.05 -3.83 16 23 H 0.41 1.64 8.21 -40.82 -0.34 1.31 16 24 C 0.12 1.18 6.22 -81.89 -0.51 0.67 16 25 C -0.06 -0.54 3.93 -90.96 -0.36 -0.90 16 26 C -0.14 -0.97 7.62 -25.92 -0.20 -1.17 16 27 C -0.14 -0.92 8.08 -25.92 -0.21 -1.12 16 28 C -0.13 -1.05 7.63 -25.92 -0.20 -1.25 16 29 C -0.12 -1.94 5.50 -26.73 -0.15 -2.09 16 30 C -0.13 -2.49 5.50 -26.73 -0.15 -2.63 16 31 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.38 10.39 7.80 -40.82 -0.32 10.07 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 3.86 7.73 -40.82 -0.32 3.54 16 38 H 0.14 0.98 7.70 -52.49 -0.40 0.57 16 39 H 0.17 0.59 8.06 -52.48 -0.42 0.16 16 40 H 0.14 1.73 5.93 -51.93 -0.31 1.42 16 41 H 0.07 0.39 7.21 -51.93 -0.37 0.01 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 47 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -33.86 396.77 -11.18 -45.04 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.33 Total: 12.00 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -4.00 Total: -11.62 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: 0.12 Total: -59.78 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.86 -11.18 -45.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034735685.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.140 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds