Wall clock time and date at job start Sat Apr 11 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48500 * 109.47085 * 239.99892 * 3 2 1 5 5 H 1.48500 * 109.47293 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47296 * 120.00071 * 3 2 1 7 7 C 1.38811 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00185 * 190.67719 * 7 2 1 9 9 N 1.36933 * 120.00285 * 10.67742 * 7 2 1 10 10 C 1.46928 * 120.63355 * 211.36253 * 9 7 2 11 11 C 1.53188 * 108.77681 * 233.62709 * 10 9 7 12 12 C 1.53040 * 109.31609 * 305.36639 * 11 10 9 13 13 C 1.52999 * 109.46205 * 181.38197 * 12 11 10 14 14 H 1.08995 * 109.49807 * 299.93366 * 13 12 11 15 15 C 1.53041 * 109.49563 * 60.00218 * 13 12 11 16 16 C 1.53038 * 109.53984 * 181.31702 * 15 13 12 17 17 C 1.53191 * 109.33692 * 298.61764 * 16 15 13 18 18 N 1.46994 * 108.73870 * 54.62244 * 17 16 15 19 19 C 1.34778 * 120.61881 * 126.39100 * 18 17 16 20 20 O 1.21696 * 120.00115 * 188.67023 * 19 18 17 21 21 C 1.46676 * 119.99788 * 8.66156 * 19 18 17 22 22 C 1.37873 * 126.23841 * 207.84520 * 21 19 18 23 23 C 1.39832 * 107.08878 * 179.85442 * 22 21 19 24 24 C 1.35454 * 107.86320 * 0.41364 * 23 22 21 25 25 N 1.35535 * 108.87137 * 359.74193 * 24 23 22 26 26 H 0.97002 * 125.67190 * 179.97438 * 25 24 23 27 27 C 1.46930 * 118.75392 * 306.40730 * 18 17 16 28 28 C 1.53044 * 109.53749 * 61.36102 * 12 11 10 29 29 C 1.46926 * 120.62865 * 31.38455 * 9 7 2 30 30 H 0.97000 * 119.99761 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58439 * 113.84172 * 10 9 7 32 32 H 1.08998 * 109.58685 * 353.41805 * 10 9 7 33 33 H 1.08997 * 109.49677 * 185.41144 * 11 10 9 34 34 H 1.09004 * 109.51856 * 65.33304 * 11 10 9 35 35 H 1.08997 * 109.45564 * 301.35878 * 12 11 10 36 36 H 1.09002 * 109.46279 * 61.29217 * 15 13 12 37 37 H 1.09006 * 109.45957 * 301.33730 * 15 13 12 38 38 H 1.09008 * 109.49749 * 58.57861 * 16 15 13 39 39 H 1.08998 * 109.50303 * 178.65012 * 16 15 13 40 40 H 1.08999 * 109.58530 * 174.43271 * 17 16 15 41 41 H 1.08999 * 109.58971 * 294.86079 * 17 16 15 42 42 H 1.08003 * 126.44991 * 359.96230 * 22 21 19 43 43 H 1.08002 * 126.06960 * 180.14665 * 23 22 21 44 44 H 1.08003 * 125.56435 * 179.71064 * 24 23 22 45 45 H 1.08998 * 109.58642 * 293.82030 * 27 18 17 46 46 H 1.08999 * 109.58489 * 173.39603 * 27 18 17 47 47 H 1.08999 * 109.49475 * 58.59077 * 28 12 11 48 48 H 1.08999 * 109.49817 * 178.68435 * 28 12 11 49 49 H 1.09006 * 109.58990 * 246.15972 * 29 9 7 50 50 H 1.09002 * 109.58715 * 6.57852 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0762 -1.2102 0.1738 9 7 1.3434 -2.3779 -0.2186 10 6 1.8000 -3.6257 0.4084 11 6 1.9900 -4.6847 -0.6821 12 6 0.6946 -4.8223 -1.4852 13 6 0.8694 -5.9038 -2.5533 14 1 1.6830 -5.6254 -3.2231 15 6 1.1961 -7.2387 -1.8799 16 6 1.4035 -8.3140 -2.9488 17 6 0.1122 -8.4834 -3.7553 18 7 -0.2880 -7.1726 -4.2867 19 6 -0.5217 -7.0081 -5.6038 20 8 -0.6971 -5.8920 -6.0560 21 6 -0.5643 -8.1744 -6.4923 22 6 -0.2579 -8.1866 -7.8365 23 6 -0.4292 -9.4999 -8.2851 24 6 -0.8372 -10.2486 -7.2326 25 7 -0.9232 -9.4550 -6.1372 26 1 -1.1932 -9.7417 -5.2508 27 6 -0.4282 -6.0450 -3.3551 28 6 0.3662 -3.4882 -2.1595 29 6 0.1579 -2.4156 -1.0857 30 1 -0.4850 0.8401 0.0004 31 1 1.0538 -3.9689 1.1250 32 1 2.7474 -3.4527 0.9188 33 1 2.2357 -5.6414 -0.2212 34 1 2.7996 -4.3823 -1.3464 35 1 -0.1196 -5.1009 -0.8162 36 1 0.3714 -7.5283 -1.2286 37 1 2.1059 -7.1341 -1.2886 38 1 2.2119 -8.0132 -3.6154 39 1 1.6597 -9.2589 -2.4696 40 1 0.2842 -9.1755 -4.5795 41 1 -0.6747 -8.8709 -3.1081 42 1 0.0569 -7.3413 -8.4306 43 1 -0.2691 -9.8536 -9.2929 44 1 -1.0584 -11.3053 -7.2616 45 1 -1.2591 -6.2338 -2.6754 46 1 -0.6129 -5.1287 -3.9157 47 1 1.1909 -3.1966 -2.8098 48 1 -0.5438 -3.5934 -2.7501 49 1 -0.7223 -2.6602 -0.4910 50 1 0.0217 -1.4442 -1.5611 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047224834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:14 Heat of formation + Delta-G solvation = 29.341629 kcal Electronic energy + Delta-G solvation = -29166.511313 eV Core-core repulsion = 25387.619074 eV Total energy + Delta-G solvation = -3778.892239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72441 -39.91927 -38.26409 -36.80710 -34.20428 -32.49208 -31.71895 -31.24885 -29.86010 -29.79166 -28.77415 -25.81175 -25.30142 -23.30954 -22.81402 -21.61864 -21.30260 -20.91659 -20.28573 -19.80802 -19.06854 -17.98725 -16.73127 -16.58335 -15.76628 -15.54177 -14.79815 -14.75216 -14.40482 -14.12981 -14.04077 -13.96574 -13.66120 -13.45578 -13.37452 -13.11773 -13.00481 -12.86398 -12.80217 -12.56151 -12.20259 -12.05633 -11.47745 -11.38068 -11.19073 -11.00482 -10.82601 -10.63367 -10.59680 -10.36634 -10.17968 -10.10522 -10.03828 -9.80171 -9.39615 -9.27643 -9.24688 -8.81274 -8.47068 -8.41230 -6.53884 -5.71935 -3.19605 1.29186 2.44403 2.68425 2.78001 3.23860 3.41798 3.47039 3.48185 4.29658 4.44574 4.53913 4.65962 4.72258 4.76913 4.91428 5.02529 5.06887 5.12270 5.19495 5.37281 5.42796 5.47477 5.54640 5.58545 5.66783 5.77072 5.78860 5.85187 5.87241 5.89716 5.98635 6.08916 6.12707 6.23040 6.30969 6.42607 6.43776 6.47723 6.61536 6.63757 6.71375 6.81305 6.89412 6.96016 7.03057 7.07399 7.21710 7.49452 7.77624 7.84853 7.98912 8.54963 9.29488 9.91513 10.49962 11.35889 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.002543 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.202799 B =11008.121793 C =11782.678806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.062 0.938 9 N -0.593 5.593 10 C 0.146 3.854 11 C -0.126 4.126 12 C -0.069 4.069 13 C -0.095 4.095 14 H 0.072 0.928 15 C -0.117 4.117 16 C -0.132 4.132 17 C 0.093 3.907 18 N -0.612 5.612 19 C 0.586 3.414 20 O -0.522 6.522 21 C -0.047 4.047 22 C -0.114 4.114 23 C -0.209 4.209 24 C 0.012 3.988 25 N -0.542 5.542 26 H 0.418 0.582 27 C 0.116 3.884 28 C -0.138 4.138 29 C 0.172 3.828 30 H 0.254 0.746 31 H 0.015 0.985 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.170 0.830 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.053 0.947 48 H 0.048 0.952 49 H 0.015 0.985 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -25.229 -10.234 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.165 4.165 12 C -0.088 4.088 13 C -0.114 4.114 14 H 0.090 0.910 15 C -0.154 4.154 16 C -0.171 4.171 17 C -0.030 4.030 18 N -0.345 5.345 19 C 0.374 3.626 20 O -0.398 6.398 21 C -0.160 4.160 22 C -0.140 4.140 23 C -0.233 4.233 24 C -0.123 4.123 25 N -0.141 5.141 26 H 0.258 0.742 27 C -0.005 4.005 28 C -0.177 4.177 29 C 0.047 3.953 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.164 0.836 43 H 0.160 0.840 44 H 0.187 0.813 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.033 0.967 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.618 -24.454 -10.289 26.580 hybrid contribution 0.308 0.529 0.423 0.744 sum -1.310 -23.926 -9.866 25.913 Atomic orbital electron populations 1.69966 1.05239 1.25487 1.54314 1.25157 0.95405 0.98341 1.00645 0.86353 0.78836 0.83360 0.78073 1.21013 1.21619 1.20925 1.19122 0.90764 0.84063 1.44172 0.92048 1.44005 1.32013 1.03432 1.52100 1.20896 0.97386 0.87232 0.92579 1.22085 0.96819 0.98634 0.99002 1.21011 0.98263 0.94154 0.95381 1.21597 0.97194 0.95244 0.97375 0.90963 1.21654 1.02420 0.94121 0.97236 1.21897 0.96912 0.99928 0.98323 1.22045 0.97515 0.84937 0.98502 1.48101 1.68288 1.11388 1.06729 1.17187 0.76935 0.87451 0.80978 1.90870 1.49851 1.24402 1.74650 1.20434 1.15187 0.84578 0.95801 1.21338 1.02829 0.97928 0.91933 1.20904 1.09653 0.93527 0.99266 1.22050 1.06473 0.97109 0.86629 1.42507 1.52521 1.07693 1.11378 0.74227 1.21851 0.97707 0.89573 0.91388 1.22302 0.99948 0.95895 0.99603 1.20770 0.88004 0.97110 0.89447 0.93609 0.96748 0.93099 0.93176 0.92566 0.91927 0.91862 0.90832 0.91359 0.90811 0.89869 0.91328 0.83606 0.83960 0.81268 0.91408 0.88180 0.92772 0.93291 0.96677 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.80 11.05 55.49 0.61 -26.19 16 2 C 0.00 0.08 5.05 -17.43 -0.09 0.00 16 3 Si 0.90 22.18 29.57 -169.99 -5.03 17.15 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -7.04 9.58 -15.06 -0.14 -7.19 16 8 H 0.06 1.69 7.85 -52.48 -0.41 1.28 16 9 N -0.59 -15.13 2.99 -172.32 -0.51 -15.65 16 10 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 11 C -0.13 -2.14 5.05 -26.61 -0.13 -2.28 16 12 C -0.07 -1.11 1.74 -90.58 -0.16 -1.27 16 13 C -0.09 -1.25 1.92 -90.50 -0.17 -1.43 16 14 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 15 C -0.12 -1.21 4.85 -26.69 -0.13 -1.34 16 16 C -0.13 -1.11 6.08 -26.61 -0.16 -1.27 16 17 C 0.09 0.74 5.27 -3.67 -0.02 0.72 16 18 N -0.61 -7.14 2.97 -174.26 -0.52 -7.66 16 19 C 0.59 8.12 7.60 -12.85 -0.10 8.02 16 20 O -0.52 -9.38 16.43 5.19 0.09 -9.29 16 21 C -0.05 -0.53 6.21 -81.98 -0.51 -1.04 16 22 C -0.11 -1.24 10.76 -39.12 -0.42 -1.67 16 23 C -0.21 -1.72 10.81 -39.98 -0.43 -2.15 16 24 C 0.01 0.08 11.89 -16.91 -0.20 -0.12 16 25 N -0.54 -4.00 4.69 -9.39 -0.04 -4.04 16 26 H 0.42 2.06 6.94 -40.82 -0.28 1.78 16 27 C 0.12 1.54 5.20 -3.71 -0.02 1.52 16 28 C -0.14 -2.70 5.05 -26.61 -0.13 -2.83 16 29 C 0.17 4.20 5.25 -3.71 -0.02 4.18 16 30 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 33 H 0.05 0.71 6.33 -51.93 -0.33 0.39 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.78 6.33 -51.93 -0.33 0.45 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.56 4.68 -51.93 -0.24 0.32 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.15 1.60 8.06 -52.48 -0.42 1.17 16 43 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.17 0.48 8.06 -52.48 -0.42 0.06 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.59 5.59 -51.93 -0.29 1.30 16 47 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.89 6.49 -51.93 -0.34 0.55 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 2.40 6.10 -51.93 -0.32 2.08 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -33.49 378.15 -10.58 -44.07 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -8.01 Total: 1.00 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -2.87 Total: -5.09 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.46 Total: -53.54 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.49 -10.58 -44.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047224834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.411 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds