Wall clock time and date at job start Sat Apr 11 2020 02:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00219 * 2 1 4 4 H 1.48495 * 109.47572 * 275.08715 * 3 2 1 5 5 H 1.48508 * 109.47162 * 35.08686 * 3 2 1 6 6 H 1.48497 * 109.47387 * 155.08327 * 3 2 1 7 7 C 1.38812 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00223 * 341.32444 * 7 2 1 9 9 N 1.36938 * 120.00114 * 161.04738 * 7 2 1 10 10 C 1.46931 * 120.63213 * 149.91618 * 9 7 2 11 11 C 1.53624 * 108.54042 * 126.36988 * 10 9 7 12 12 C 1.53043 * 109.24109 * 54.85965 * 11 10 9 13 13 C 1.53035 * 109.53684 * 298.51001 * 12 11 10 14 14 H 1.09005 * 109.49877 * 301.41246 * 13 12 11 15 15 C 1.53005 * 109.52492 * 181.33431 * 13 12 11 16 16 H 1.09007 * 109.49480 * 300.14517 * 15 13 12 17 17 C 1.53039 * 109.49938 * 180.02562 * 15 13 12 18 18 C 1.53039 * 109.53656 * 178.68092 * 17 15 13 19 19 C 1.53193 * 109.31099 * 61.36851 * 18 17 15 20 20 N 1.46925 * 108.77400 * 305.36182 * 19 18 17 21 21 C 1.34779 * 120.63077 * 233.60988 * 20 19 18 22 22 O 1.21692 * 120.00150 * 178.80778 * 21 20 19 23 23 C 1.46685 * 119.99959 * 358.80463 * 21 20 19 24 24 C 1.37868 * 126.22944 * 155.05147 * 23 21 20 25 25 C 1.39843 * 107.08258 * 179.85046 * 24 23 21 26 26 C 1.35453 * 107.86098 * 0.41665 * 25 24 23 27 27 N 1.35531 * 108.87273 * 359.74327 * 26 25 24 28 28 H 0.96996 * 125.67363 * 180.02562 * 27 26 25 29 29 C 1.46924 * 118.76591 * 53.59374 * 20 19 18 30 30 C 1.46926 * 120.62905 * 330.20083 * 9 7 2 31 31 H 0.96997 * 120.00250 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.58682 * 246.20257 * 10 9 7 33 33 H 1.09003 * 109.58188 * 6.63317 * 10 9 7 34 34 H 1.09001 * 109.63556 * 294.86854 * 11 10 9 35 35 H 1.09005 * 109.45298 * 174.74128 * 11 10 9 36 36 H 1.09000 * 109.46113 * 178.48689 * 12 11 10 37 37 H 1.08996 * 109.46188 * 58.52878 * 12 11 10 38 38 H 1.08996 * 109.46131 * 298.70228 * 17 15 13 39 39 H 1.09000 * 109.45648 * 58.67820 * 17 15 13 40 40 H 1.09003 * 109.50054 * 181.32022 * 18 17 15 41 41 H 1.09002 * 109.50209 * 301.41913 * 18 17 15 42 42 H 1.08999 * 109.58747 * 65.15453 * 19 18 17 43 43 H 1.09009 * 109.58702 * 185.57869 * 19 18 17 44 44 H 1.08001 * 126.46147 * 0.02562 * 24 23 21 45 45 H 1.08001 * 126.06518 * 180.16252 * 25 24 23 46 46 H 1.08005 * 125.55856 * 179.71918 * 26 25 24 47 47 H 1.09002 * 109.61980 * 186.64073 * 29 20 19 48 48 H 1.08999 * 109.56943 * 66.20901 * 29 20 19 49 49 H 1.09000 * 109.58813 * 353.36833 * 30 9 7 50 50 H 1.09005 * 109.58789 * 113.79653 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3902 2.1085 -1.3945 5 1 1.5055 2.6192 0.8048 6 1 3.5973 1.4115 0.5898 7 6 2.0102 -1.2022 -0.0005 8 1 1.5129 -2.1130 0.2985 9 7 3.3239 -1.2342 -0.3857 10 6 4.2460 -2.2283 0.1803 11 6 4.9229 -2.9805 -0.9755 12 6 5.5870 -1.9706 -1.9143 13 6 4.5224 -1.0418 -2.5025 14 1 3.7801 -1.6329 -3.0390 15 6 5.1821 -0.0536 -3.4664 16 1 5.9252 0.5367 -2.9301 17 6 4.1171 0.8753 -4.0538 18 6 4.7806 1.8853 -4.9929 19 6 5.4578 1.1366 -6.1452 20 7 6.3789 0.1389 -5.5842 21 6 7.6718 0.1076 -5.9639 22 8 8.4297 -0.7097 -5.4758 23 6 8.1651 1.0588 -6.9657 24 6 9.4677 1.4862 -7.1115 25 6 9.4884 2.3819 -8.1852 26 6 8.2245 2.4907 -8.6599 27 7 7.4108 1.6918 -7.9274 28 1 6.4559 1.5838 -8.0593 29 6 5.8647 -0.8242 -4.6010 30 6 3.8396 -0.2711 -1.3682 31 1 -0.4850 0.8400 0.0004 32 1 5.0010 -1.7244 0.7838 33 1 3.6895 -2.9317 0.7998 34 1 4.1769 -3.5533 -1.5264 35 1 5.6784 -3.6568 -0.5754 36 1 6.0913 -2.5020 -2.7213 37 1 6.3152 -1.3813 -1.3571 38 1 3.3884 0.2862 -4.6105 39 1 3.6137 1.4070 -3.2463 40 1 4.0248 2.5614 -5.3928 41 1 5.5271 2.4580 -4.4426 42 1 4.7018 0.6365 -6.7505 43 1 6.0148 1.8420 -6.7620 44 1 10.3134 1.1839 -6.5115 45 1 10.3573 2.8985 -8.5656 46 1 7.9155 3.1130 -9.4868 47 1 6.6896 -1.4123 -4.1986 48 1 5.1421 -1.4847 -5.0804 49 1 3.0150 0.3172 -1.7708 50 1 4.5621 0.3891 -0.8884 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053005968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:47 Heat of formation + Delta-G solvation = 43.411629 kcal Electronic energy + Delta-G solvation = -29698.989081 eV Core-core repulsion = 25920.706963 eV Total energy + Delta-G solvation = -3778.282118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80746 -39.93513 -38.41352 -36.99350 -34.09237 -32.88403 -31.91620 -31.40771 -30.60387 -29.88613 -28.44322 -26.08752 -25.04879 -23.85998 -22.91020 -21.92512 -21.21238 -21.05510 -20.32607 -19.78093 -19.36386 -17.89306 -16.85993 -16.66436 -15.91719 -15.60240 -15.19123 -14.76081 -14.47846 -14.27113 -14.09141 -13.81512 -13.72317 -13.65604 -13.57786 -13.10928 -13.06449 -12.99866 -12.79500 -12.60144 -12.55883 -12.12822 -11.85482 -11.66970 -11.48187 -11.04811 -10.85101 -10.78307 -10.52341 -10.45896 -10.30209 -10.16809 -10.02673 -9.72367 -9.59922 -9.41468 -9.27401 -8.85870 -8.61107 -8.47470 -6.90935 -5.96083 -3.33524 1.26526 2.44423 2.65072 2.79980 3.20898 3.26289 3.45469 3.49611 4.23713 4.44720 4.50884 4.69273 4.73792 4.77988 4.85798 4.99994 5.03151 5.07969 5.16071 5.22822 5.33975 5.38186 5.44320 5.53648 5.54812 5.68352 5.72392 5.78446 5.81763 5.86191 5.95163 5.99021 6.01673 6.16086 6.20066 6.27084 6.32281 6.35449 6.42511 6.44284 6.47349 6.62542 6.64652 6.68853 6.76911 6.79495 7.00649 7.04118 7.18870 7.95647 7.99663 8.34001 8.95615 9.71928 10.12514 11.20197 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.003248 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.782426 B = 8617.433692 C = 9606.669380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.257 4.257 8 H 0.084 0.916 9 N -0.607 5.607 10 C 0.146 3.854 11 C -0.135 4.135 12 C -0.107 4.107 13 C -0.096 4.096 14 H 0.074 0.926 15 C -0.094 4.094 16 H 0.072 0.928 17 C -0.123 4.123 18 C -0.133 4.133 19 C 0.085 3.915 20 N -0.608 5.608 21 C 0.587 3.413 22 O -0.529 6.529 23 C -0.048 4.048 24 C -0.112 4.112 25 C -0.209 4.209 26 C 0.012 3.988 27 N -0.544 5.544 28 H 0.421 0.579 29 C 0.118 3.882 30 C 0.136 3.864 31 H 0.262 0.738 32 H 0.021 0.979 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.170 0.830 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.314 4.863 -18.006 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.385 4.385 8 H 0.102 0.898 9 N -0.330 5.330 10 C 0.020 3.980 11 C -0.174 4.174 12 C -0.145 4.145 13 C -0.117 4.117 14 H 0.093 0.907 15 C -0.114 4.114 16 H 0.090 0.910 17 C -0.160 4.160 18 C -0.171 4.171 19 C -0.039 4.039 20 N -0.341 5.341 21 C 0.376 3.624 22 O -0.405 6.405 23 C -0.160 4.160 24 C -0.139 4.139 25 C -0.234 4.234 26 C -0.123 4.123 27 N -0.147 5.147 28 H 0.265 0.735 29 C -0.004 4.004 30 C 0.011 3.989 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.164 0.836 45 H 0.160 0.840 46 H 0.188 0.812 47 H 0.116 0.884 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 14.358 4.435 -17.698 23.217 hybrid contribution -0.152 1.168 -0.155 1.188 sum 14.206 5.602 -17.852 23.493 Atomic orbital electron populations 1.69819 1.05718 1.26449 1.53394 1.25335 0.95217 0.97541 0.99426 0.86959 0.80213 0.84699 0.76976 1.21580 1.23196 1.19436 1.18933 0.84184 0.94429 1.40950 0.89847 1.44352 1.07460 1.36261 1.44933 1.21049 0.92242 0.91506 0.93155 1.22067 0.99237 0.97647 0.98425 1.21504 0.97258 0.97325 0.98419 1.21677 0.97298 0.96397 0.96315 0.90735 1.21542 0.97393 0.97053 0.95382 0.90965 1.21690 0.97806 0.97234 0.99278 1.21904 1.00177 0.98297 0.96701 1.22296 0.93210 0.91277 0.97106 1.48080 1.08739 1.33704 1.43545 1.17167 0.81448 0.82665 0.81144 1.90838 1.55317 1.37845 1.56526 1.20420 0.92478 1.05054 0.98093 1.21325 0.94507 0.98889 0.99148 1.20913 0.96934 1.04972 1.00559 1.22102 0.91155 0.99261 0.99767 1.42969 1.10494 1.34960 1.26299 0.73501 1.21838 0.99329 0.90633 0.88579 1.21358 0.96689 0.91878 0.88989 0.92833 0.96095 0.92041 0.92070 0.92850 0.92872 0.92662 0.91335 0.90549 0.90532 0.91340 0.90829 0.89535 0.83606 0.83956 0.81233 0.88385 0.91242 0.91060 0.95985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.74 13.97 55.49 0.78 -26.97 16 2 C 0.02 0.68 5.24 -17.43 -0.09 0.58 16 3 Si 0.88 22.19 24.37 -169.99 -4.14 18.05 16 4 H -0.29 -6.82 6.48 56.52 0.37 -6.45 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.27 -6.75 6.44 56.52 0.36 -6.39 16 7 C -0.26 -7.15 10.02 -15.06 -0.15 -7.30 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.61 -14.40 2.73 -172.05 -0.47 -14.87 16 10 C 0.15 2.93 6.54 -3.48 -0.02 2.90 16 11 C -0.13 -2.24 6.10 -26.38 -0.16 -2.40 16 12 C -0.11 -1.70 4.86 -26.69 -0.13 -1.83 16 13 C -0.10 -1.63 1.92 -90.50 -0.17 -1.80 16 14 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 15 C -0.09 -1.35 1.92 -90.49 -0.17 -1.52 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 17 C -0.12 -1.67 4.86 -26.69 -0.13 -1.80 16 18 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 19 C 0.08 0.76 5.54 -3.71 -0.02 0.74 16 20 N -0.61 -7.29 2.97 -174.30 -0.52 -7.81 16 21 C 0.59 8.04 7.64 -12.85 -0.10 7.94 16 22 O -0.53 -9.05 16.38 5.20 0.09 -8.97 16 23 C -0.05 -0.54 6.46 -81.98 -0.53 -1.07 16 24 C -0.11 -1.23 10.74 -39.12 -0.42 -1.65 16 25 C -0.21 -1.76 10.81 -39.98 -0.43 -2.19 16 26 C 0.01 0.08 11.89 -16.91 -0.20 -0.12 16 27 N -0.54 -4.24 4.81 -9.39 -0.05 -4.29 16 28 H 0.42 2.31 6.13 -40.82 -0.25 2.06 16 29 C 0.12 1.54 5.20 -3.71 -0.02 1.52 16 30 C 0.14 2.90 2.95 -3.71 -0.01 2.89 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.76 6.50 -51.93 -0.34 0.42 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.24 6.22 -51.93 -0.32 0.91 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.63 3.69 -51.93 -0.19 0.43 16 44 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.17 0.55 8.06 -52.48 -0.42 0.13 16 47 H 0.10 1.42 5.59 -51.93 -0.29 1.13 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.07 1.64 3.35 -51.93 -0.17 1.47 16 50 H 0.02 0.48 6.92 -51.93 -0.36 0.13 16 LS Contribution 370.50 15.07 5.58 5.58 Total: -1.00 -33.58 370.50 -9.55 -43.13 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.89 Total: 2.78 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.93 Total: -6.65 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.26 Total: -53.93 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.58 -9.55 -43.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053005968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.543 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds