Wall clock time and date at job start Sat Apr 11 2020 02:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48497 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46854 * 299.99923 * 3 2 1 6 6 H 1.48499 * 109.47155 * 59.99996 * 3 2 1 7 7 C 1.38817 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99835 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00437 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00390 * 174.60297 * 9 7 2 11 11 C 1.53001 * 110.01433 * 301.46337 * 10 9 7 12 12 N 1.46504 * 109.47170 * 303.89912 * 11 10 9 13 13 C 1.34777 * 120.00009 * 175.13263 * 12 11 10 14 14 O 1.21287 * 119.99553 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99845 * 179.72581 * 13 12 11 16 16 C 1.53004 * 109.47059 * 180.27265 * 15 13 12 17 17 C 1.52999 * 109.47224 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47037 * 180.02562 * 17 16 15 19 19 C 1.38679 * 120.41471 * 269.71796 * 18 17 16 20 20 C 1.38631 * 118.41875 * 179.78168 * 19 18 17 21 21 C 1.38227 * 119.15835 * 0.51741 * 20 19 18 22 22 N 1.31854 * 120.76384 * 359.71887 * 21 20 19 23 23 C 1.31879 * 121.72794 * 0.02562 * 22 21 20 24 24 C 1.54261 * 110.07083 * 62.87781 * 10 9 7 25 25 C 1.54892 * 104.19481 * 95.70003 * 24 10 9 26 26 C 1.54887 * 102.74885 * 37.93904 * 25 24 10 27 27 C 1.53873 * 110.03230 * 180.02562 * 10 9 7 28 28 H 0.96995 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00117 * 354.60521 * 9 7 2 30 30 H 1.09004 * 109.46848 * 183.90351 * 11 10 9 31 31 H 1.09001 * 109.47429 * 63.90183 * 11 10 9 32 32 H 0.96994 * 119.99651 * 355.12890 * 12 11 10 33 33 H 1.08991 * 109.47231 * 300.27158 * 15 13 12 34 34 H 1.09005 * 109.47393 * 60.27755 * 15 13 12 35 35 H 1.09005 * 109.47051 * 300.00203 * 16 15 13 36 36 H 1.09002 * 109.47411 * 59.99563 * 16 15 13 37 37 H 1.09000 * 109.46834 * 299.99523 * 17 16 15 38 38 H 1.08996 * 109.47300 * 59.99732 * 17 16 15 39 39 H 1.07999 * 120.79327 * 0.02562 * 19 18 17 40 40 H 1.07994 * 120.42066 * 180.21892 * 20 19 18 41 41 H 1.07998 * 119.61971 * 179.74635 * 21 20 19 42 42 H 1.08008 * 119.61696 * 179.97438 * 23 22 21 43 43 H 1.08993 * 110.48835 * 214.37552 * 24 10 9 44 44 H 1.09005 * 110.49054 * 337.02499 * 24 10 9 45 45 H 1.09000 * 110.75559 * 279.62556 * 25 24 10 46 46 H 1.08996 * 110.75675 * 156.26000 * 25 24 10 47 47 H 1.08999 * 110.48639 * 203.37990 * 26 25 24 48 48 H 1.09001 * 110.48243 * 80.73632 * 26 25 24 49 49 H 1.09000 * 110.03615 * 359.95040 * 27 10 9 50 50 H 1.08999 * 110.03078 * 121.38187 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0532 -3.6541 -0.1182 11 6 2.8623 -3.6732 -1.4167 12 7 1.9682 -3.4363 -2.5528 13 6 2.4756 -3.3118 -3.7951 14 8 3.6725 -3.3954 -3.9725 15 6 1.5553 -3.0743 -4.9646 16 6 2.3790 -2.9781 -6.2504 17 6 1.4447 -2.7363 -7.4376 18 6 2.2559 -2.6421 -8.7042 19 6 2.7359 -1.4166 -9.1410 20 6 3.4815 -1.3784 -10.3091 21 6 3.7108 -2.5532 -11.0004 22 7 3.2345 -3.7002 -10.5577 23 6 2.5258 -3.7748 -9.4481 24 6 2.9915 -3.8410 1.0919 25 6 2.1742 -4.7158 2.0747 26 6 1.4382 -5.6965 1.1283 27 6 1.0657 -4.8339 -0.0939 28 1 -0.4849 0.8400 -0.0004 29 1 0.3587 -2.3900 0.0791 30 1 3.3444 -4.6443 -1.5300 31 1 3.6219 -2.8922 -1.3831 32 1 1.0110 -3.3692 -2.4108 33 1 0.8502 -3.9014 -5.0459 34 1 1.0081 -2.1438 -4.8132 35 1 3.0842 -2.1509 -6.1691 36 1 2.9263 -3.9085 -6.4018 37 1 0.7393 -3.5632 -7.5191 38 1 0.8978 -1.8058 -7.2860 39 1 2.5370 -0.5139 -8.5824 40 1 3.8740 -0.4419 -10.6769 41 1 4.2872 -2.5314 -11.9135 42 1 2.1518 -4.7325 -9.1170 43 1 3.9039 -4.3558 0.7912 44 1 3.2272 -2.8776 1.5443 45 1 1.4612 -4.1080 2.6316 46 1 2.8353 -5.2558 2.7525 47 1 0.5405 -6.0873 1.6072 48 1 2.0999 -6.5110 0.8335 49 1 0.0451 -4.4646 0.0071 50 1 1.1622 -5.4205 -1.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268040607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:56:52 Heat of formation + Delta-G solvation = -18.467603 kcal Electronic energy + Delta-G solvation = -27982.348637 eV Core-core repulsion = 24201.383234 eV Total energy + Delta-G solvation = -3780.965403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37154 -39.44292 -38.18311 -35.39338 -34.03944 -33.29987 -32.45274 -31.52964 -30.61405 -28.34182 -28.18076 -26.98276 -24.54715 -23.75176 -23.40887 -22.70985 -21.22384 -20.42437 -19.58747 -18.57162 -17.32309 -17.01832 -16.67239 -16.64945 -15.76280 -15.49477 -15.34410 -14.98527 -14.66918 -14.18617 -14.10595 -13.92524 -13.72817 -13.35408 -13.26817 -13.20097 -12.82806 -12.65012 -12.49643 -12.15825 -11.79118 -11.61858 -11.47538 -11.32485 -11.10089 -10.81469 -10.74838 -10.73267 -10.65825 -10.52096 -10.24685 -10.15724 -9.96896 -9.86329 -9.67395 -9.63949 -9.38609 -9.11427 -8.93337 -8.38531 -7.03557 -5.83838 -3.12397 0.90876 1.08909 3.14110 3.38528 3.46546 3.47596 3.58300 3.78599 4.24536 4.53766 4.56088 4.60310 4.79426 4.80965 4.98160 5.05089 5.09373 5.11593 5.16807 5.22158 5.31158 5.46696 5.53426 5.56761 5.63547 5.66537 5.67424 5.74619 5.80585 5.90867 5.92468 5.93408 6.00697 6.07326 6.16701 6.23230 6.24966 6.29390 6.30843 6.43152 6.51237 6.55039 6.60480 6.75703 6.81251 6.99915 7.12706 7.68833 7.77230 8.11539 8.34962 8.77045 9.46965 10.00923 10.36393 11.38295 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.002648 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.531655 B =10572.205843 C =12240.393204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.900 3.100 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.230 4.230 8 H 0.069 0.931 9 N -0.710 5.710 10 C 0.189 3.811 11 C 0.120 3.880 12 N -0.701 5.701 13 C 0.508 3.492 14 O -0.560 6.560 15 C -0.141 4.141 16 C -0.095 4.095 17 C -0.079 4.079 18 C -0.126 4.126 19 C -0.074 4.074 20 C -0.171 4.171 21 C 0.087 3.913 22 N -0.485 5.485 23 C 0.099 3.901 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.125 4.125 28 H 0.253 0.747 29 H 0.384 0.616 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.402 0.598 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.068 0.932 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 -8.510 -12.946 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.731 3.269 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.361 4.361 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.096 3.904 11 C -0.006 4.006 12 N -0.350 5.350 13 C 0.294 3.706 14 O -0.439 6.439 15 C -0.181 4.181 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.128 4.128 19 C -0.100 4.100 20 C -0.190 4.190 21 C -0.070 4.070 22 N -0.194 5.194 23 C -0.058 4.058 24 C -0.172 4.172 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.163 4.163 28 H 0.063 0.937 29 H 0.219 0.781 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.236 0.764 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.172 0.828 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.899 -9.183 -13.550 16.478 hybrid contribution -0.437 2.025 0.636 2.166 sum 1.462 -7.158 -12.914 14.837 Atomic orbital electron populations 1.69655 1.04977 1.25464 1.57909 1.24672 0.95410 0.97458 1.02985 0.86222 0.79038 0.84496 0.77112 1.20575 1.21995 1.21961 1.19133 0.91025 0.83841 1.42089 0.91264 1.42547 1.05947 0.99453 1.87237 1.20465 0.91310 0.87162 0.91431 1.21846 0.93209 0.99384 0.86159 1.45753 1.11367 1.71562 1.06300 1.20525 0.89105 0.76530 0.84430 1.90654 1.16154 1.51636 1.85481 1.21654 0.98797 1.04217 0.93442 1.21283 0.97316 1.03551 0.91187 1.20627 0.96995 1.03365 0.90759 1.20956 0.99683 0.94248 0.97878 1.21578 0.94999 0.98005 0.95393 1.22156 1.00196 1.00124 0.96566 1.22732 0.97053 0.87925 0.99271 1.67670 1.09141 1.28711 1.13842 1.22694 0.94512 0.98201 0.90358 1.22826 0.97329 1.00273 0.96794 1.22387 0.98752 0.97079 0.97251 1.22286 0.99583 0.97634 0.96338 1.22407 0.99819 0.96340 0.97764 0.93661 0.78147 0.93327 0.91635 0.76366 0.89250 0.88698 0.91088 0.91155 0.90431 0.90428 0.84731 0.84861 0.82984 0.82847 0.92953 0.90327 0.91411 0.92744 0.92370 0.92304 0.91315 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.26 13.06 55.49 0.73 -25.53 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -5.84 8.39 -15.06 -0.13 -5.97 16 8 H 0.07 1.80 7.23 -52.48 -0.38 1.42 16 9 N -0.71 -15.59 4.76 -46.20 -0.22 -15.81 16 10 C 0.19 3.34 0.68 -130.70 -0.09 3.25 16 11 C 0.12 2.19 3.99 -4.04 -0.02 2.17 16 12 N -0.70 -11.91 5.10 -60.29 -0.31 -12.22 16 13 C 0.51 8.63 7.83 -10.99 -0.09 8.55 16 14 O -0.56 -11.50 15.98 5.55 0.09 -11.41 16 15 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 16 C -0.10 -1.12 4.49 -26.73 -0.12 -1.24 16 17 C -0.08 -0.72 5.37 -27.88 -0.15 -0.87 16 18 C -0.13 -1.27 5.15 -104.48 -0.54 -1.81 16 19 C -0.07 -0.71 9.86 -39.27 -0.39 -1.10 16 20 C -0.17 -1.50 10.11 -39.44 -0.40 -1.90 16 21 C 0.09 0.84 11.18 -17.55 -0.20 0.64 16 22 N -0.49 -5.65 10.36 -13.25 -0.14 -5.79 16 23 C 0.10 1.05 10.86 -17.55 -0.19 0.86 16 24 C -0.13 -2.25 5.94 -25.07 -0.15 -2.39 16 25 C -0.12 -1.73 6.91 -24.74 -0.17 -1.90 16 26 C -0.12 -1.60 6.83 -25.13 -0.17 -1.77 16 27 C -0.13 -1.85 5.80 -25.67 -0.15 -2.00 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.38 9.03 7.28 -40.82 -0.30 8.74 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.40 7.49 -51.93 -0.39 1.01 16 32 H 0.40 6.48 7.99 -40.82 -0.33 6.15 16 33 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.15 1.33 8.06 -52.48 -0.42 0.90 16 43 H 0.05 0.82 7.85 -51.93 -0.41 0.41 16 44 H 0.08 1.54 7.12 -51.93 -0.37 1.17 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 1.05 7.44 -51.93 -0.39 0.67 16 50 H 0.06 0.83 7.55 -51.93 -0.39 0.44 16 LS Contribution 404.60 15.07 6.10 6.10 Total: -1.00 -31.25 404.60 -10.39 -41.63 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -8.42 Total: 13.88 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -3.19 Total: -7.72 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: 0.06 Total: -59.34 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.25 -10.39 -41.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268040607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.166 kcal (2) G-P(sol) polarization free energy of solvation -31.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds