Wall clock time and date at job start Sat Apr 11 2020 02:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48497 * 109.47219 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46854 * 299.99923 * 3 2 1 6 6 H 1.48499 * 109.47155 * 59.99996 * 3 2 1 7 7 C 1.38817 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99835 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00437 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00390 * 174.60297 * 9 7 2 11 11 C 1.53001 * 110.01433 * 301.46337 * 10 9 7 12 12 N 1.46504 * 109.47170 * 303.89912 * 11 10 9 13 13 C 1.34777 * 120.00009 * 175.13263 * 12 11 10 14 14 O 1.21287 * 119.99553 * 359.97438 * 13 12 11 15 15 C 1.50694 * 119.99845 * 179.72581 * 13 12 11 16 16 C 1.53004 * 109.47059 * 180.27265 * 15 13 12 17 17 C 1.52999 * 109.47224 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47037 * 180.02562 * 17 16 15 19 19 C 1.38679 * 120.41471 * 269.71796 * 18 17 16 20 20 C 1.38631 * 118.41875 * 179.78168 * 19 18 17 21 21 C 1.38227 * 119.15835 * 0.51741 * 20 19 18 22 22 N 1.31854 * 120.76384 * 359.71887 * 21 20 19 23 23 C 1.31879 * 121.72794 * 0.02562 * 22 21 20 24 24 C 1.54261 * 110.07083 * 62.87781 * 10 9 7 25 25 C 1.54892 * 104.19481 * 95.70003 * 24 10 9 26 26 C 1.54887 * 102.74885 * 37.93904 * 25 24 10 27 27 C 1.53873 * 110.03230 * 180.02562 * 10 9 7 28 28 H 0.96995 * 119.99743 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00117 * 354.60521 * 9 7 2 30 30 H 1.09004 * 109.46848 * 183.90351 * 11 10 9 31 31 H 1.09001 * 109.47429 * 63.90183 * 11 10 9 32 32 H 0.96994 * 119.99651 * 355.12890 * 12 11 10 33 33 H 1.08991 * 109.47231 * 300.27158 * 15 13 12 34 34 H 1.09005 * 109.47393 * 60.27755 * 15 13 12 35 35 H 1.09005 * 109.47051 * 300.00203 * 16 15 13 36 36 H 1.09002 * 109.47411 * 59.99563 * 16 15 13 37 37 H 1.09000 * 109.46834 * 299.99523 * 17 16 15 38 38 H 1.08996 * 109.47300 * 59.99732 * 17 16 15 39 39 H 1.07999 * 120.79327 * 0.02562 * 19 18 17 40 40 H 1.07994 * 120.42066 * 180.21892 * 20 19 18 41 41 H 1.07998 * 119.61971 * 179.74635 * 21 20 19 42 42 H 1.08008 * 119.61696 * 179.97438 * 23 22 21 43 43 H 1.08993 * 110.48835 * 214.37552 * 24 10 9 44 44 H 1.09005 * 110.49054 * 337.02499 * 24 10 9 45 45 H 1.09000 * 110.75559 * 279.62556 * 25 24 10 46 46 H 1.08996 * 110.75675 * 156.26000 * 25 24 10 47 47 H 1.08999 * 110.48639 * 203.37990 * 26 25 24 48 48 H 1.09001 * 110.48243 * 80.73632 * 26 25 24 49 49 H 1.09000 * 110.03615 * 359.95040 * 27 10 9 50 50 H 1.08999 * 110.03078 * 121.38187 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0532 -3.6541 -0.1182 11 6 2.8623 -3.6732 -1.4167 12 7 1.9682 -3.4363 -2.5528 13 6 2.4756 -3.3118 -3.7951 14 8 3.6725 -3.3954 -3.9725 15 6 1.5553 -3.0743 -4.9646 16 6 2.3790 -2.9781 -6.2504 17 6 1.4447 -2.7363 -7.4376 18 6 2.2559 -2.6421 -8.7042 19 6 2.7359 -1.4166 -9.1410 20 6 3.4815 -1.3784 -10.3091 21 6 3.7108 -2.5532 -11.0004 22 7 3.2345 -3.7002 -10.5577 23 6 2.5258 -3.7748 -9.4481 24 6 2.9915 -3.8410 1.0919 25 6 2.1742 -4.7158 2.0747 26 6 1.4382 -5.6965 1.1283 27 6 1.0657 -4.8339 -0.0939 28 1 -0.4849 0.8400 -0.0004 29 1 0.3587 -2.3900 0.0791 30 1 3.3444 -4.6443 -1.5300 31 1 3.6219 -2.8922 -1.3831 32 1 1.0110 -3.3692 -2.4108 33 1 0.8502 -3.9014 -5.0459 34 1 1.0081 -2.1438 -4.8132 35 1 3.0842 -2.1509 -6.1691 36 1 2.9263 -3.9085 -6.4018 37 1 0.7393 -3.5632 -7.5191 38 1 0.8978 -1.8058 -7.2860 39 1 2.5370 -0.5139 -8.5824 40 1 3.8740 -0.4419 -10.6769 41 1 4.2872 -2.5314 -11.9135 42 1 2.1518 -4.7325 -9.1170 43 1 3.9039 -4.3558 0.7912 44 1 3.2272 -2.8776 1.5443 45 1 1.4612 -4.1080 2.6316 46 1 2.8353 -5.2558 2.7525 47 1 0.5405 -6.0873 1.6072 48 1 2.0999 -6.5110 0.8335 49 1 0.0451 -4.4646 0.0071 50 1 1.1622 -5.4205 -1.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268040607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:56:51 Heat of formation + Delta-G solvation = -37.117101 kcal Electronic energy + Delta-G solvation = -27983.157340 eV Core-core repulsion = 24201.383234 eV Total energy + Delta-G solvation = -3781.774106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13223 -40.80555 -39.56349 -36.27693 -35.52006 -35.05843 -33.25279 -32.54382 -32.16630 -29.68908 -29.52059 -28.05299 -26.10441 -24.92472 -24.47811 -23.76246 -22.09922 -21.63803 -20.91131 -20.03561 -18.92213 -18.16561 -17.83829 -17.43468 -17.21639 -16.65005 -16.52288 -16.13865 -15.97051 -15.70668 -15.18938 -15.09021 -14.96697 -14.77890 -14.27061 -14.12727 -14.00239 -13.93442 -13.52141 -13.36241 -13.22200 -12.95113 -12.81917 -12.58966 -12.46866 -12.31621 -12.17701 -12.12477 -11.87111 -11.71635 -11.63999 -11.58135 -11.36714 -11.31171 -10.95844 -10.76152 -10.67577 -10.37019 -9.85908 -9.85230 -8.93670 -7.91042 -5.15771 0.18876 0.35523 1.41885 1.45812 1.52064 1.78968 2.44508 2.57137 2.88449 3.40304 3.56155 3.78101 3.79683 3.83987 3.89926 3.92187 3.99950 4.09590 4.09981 4.16866 4.24726 4.29611 4.45282 4.54826 4.58642 4.64737 4.67548 4.74671 4.77135 4.81917 4.85916 4.89174 4.97893 5.01325 5.06358 5.13169 5.15390 5.19932 5.22285 5.28226 5.38245 5.41292 5.45407 5.51184 5.60161 5.63041 5.72290 5.81826 6.33290 6.75153 7.03879 7.40475 7.41714 8.14384 8.39394 9.31398 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.011754 B = 0.002648 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.531655 B =10572.205843 C =12240.393204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.062 4.062 3 Si 0.946 3.054 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.211 4.211 8 H 0.059 0.941 9 N -0.712 5.712 10 C 0.184 3.816 11 C 0.127 3.873 12 N -0.699 5.699 13 C 0.500 3.500 14 O -0.600 6.600 15 C -0.132 4.132 16 C -0.088 4.088 17 C -0.069 4.069 18 C -0.136 4.136 19 C -0.087 4.087 20 C -0.171 4.171 21 C 0.075 3.925 22 N -0.514 5.514 23 C 0.085 3.915 24 C -0.133 4.133 25 C -0.113 4.113 26 C -0.112 4.112 27 C -0.119 4.119 28 H 0.248 0.752 29 H 0.377 0.623 30 H 0.062 0.938 31 H 0.027 0.973 32 H 0.408 0.592 33 H 0.124 0.876 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.146 0.854 40 H 0.159 0.841 41 H 0.175 0.825 42 H 0.167 0.833 43 H 0.067 0.933 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 -9.910 -13.554 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.255 4.255 3 Si 0.778 3.222 4 H -0.205 1.205 5 H -0.224 1.224 6 H -0.223 1.223 7 C -0.343 4.343 8 H 0.077 0.923 9 N -0.352 5.352 10 C 0.093 3.907 11 C 0.001 3.999 12 N -0.348 5.348 13 C 0.288 3.712 14 O -0.483 6.483 15 C -0.171 4.171 16 C -0.126 4.126 17 C -0.107 4.107 18 C -0.137 4.137 19 C -0.113 4.113 20 C -0.190 4.190 21 C -0.081 4.081 22 N -0.223 5.223 23 C -0.072 4.072 24 C -0.174 4.174 25 C -0.151 4.151 26 C -0.150 4.150 27 C -0.157 4.157 28 H 0.057 0.943 29 H 0.210 0.790 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.243 0.757 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.164 0.836 40 H 0.176 0.824 41 H 0.192 0.808 42 H 0.184 0.816 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.082 0.918 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.325 -10.613 -14.153 17.740 hybrid contribution -0.142 2.413 0.825 2.554 sum 1.183 -8.201 -13.328 15.694 Atomic orbital electron populations 1.69748 1.05723 1.25369 1.60114 1.25167 0.96066 0.99634 1.04645 0.85471 0.78118 0.82044 0.76555 1.20493 1.22417 1.22304 1.19222 0.90629 0.85155 1.39335 0.92320 1.42598 1.05594 1.00051 1.87000 1.20719 0.92033 0.86581 0.91336 1.21693 0.92711 0.98645 0.86886 1.45786 1.11453 1.71383 1.06200 1.21396 0.89237 0.75268 0.85312 1.90634 1.18191 1.53382 1.86077 1.21690 0.98294 1.05851 0.91294 1.21177 0.97304 1.01930 0.92163 1.20557 0.96484 1.04704 0.88945 1.21088 1.00048 0.94372 0.98239 1.21890 0.95081 0.98432 0.95919 1.22461 0.99517 1.00977 0.96083 1.23194 0.97007 0.87778 1.00135 1.67676 1.10089 1.29888 1.14609 1.22973 0.94720 0.99060 0.90436 1.22791 0.98261 0.99428 0.96872 1.22355 0.98514 0.96962 0.97240 1.22279 1.00527 0.97290 0.94898 1.22351 0.98433 0.95260 0.99610 0.94290 0.78982 0.91938 0.95499 0.75670 0.85759 0.87991 0.93653 0.92283 0.88325 0.89513 0.83616 0.82358 0.80784 0.81617 0.91481 0.93604 0.93199 0.90520 0.90651 0.90286 0.91762 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.60 13.06 21.65 0.28 -54.32 16 2 C -0.06 -3.40 5.50 84.86 0.47 -2.93 16 3 Si 0.95 45.70 29.55 68.60 2.03 47.72 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 7 C -0.21 -10.89 8.39 84.04 0.70 -10.18 16 8 H 0.06 3.13 7.23 -2.91 -0.02 3.11 16 9 N -0.71 -31.35 4.76 -300.07 -1.43 -32.77 16 10 C 0.18 6.38 0.68 4.32 0.00 6.38 16 11 C 0.13 4.59 3.99 86.38 0.34 4.94 16 12 N -0.70 -23.26 5.10 -463.04 -2.36 -25.62 16 13 C 0.50 16.73 7.83 87.66 0.69 17.41 16 14 O -0.60 -24.99 15.98 -3.05 -0.05 -25.04 16 15 C -0.13 -3.03 5.70 29.85 0.17 -2.86 16 16 C -0.09 -1.98 4.49 30.60 0.14 -1.85 16 17 C -0.07 -1.13 5.37 29.85 0.16 -0.97 16 18 C -0.14 -2.59 5.15 -19.77 -0.10 -2.69 16 19 C -0.09 -1.58 9.86 22.47 0.22 -1.36 16 20 C -0.17 -2.78 10.11 22.36 0.23 -2.56 16 21 C 0.08 1.38 11.18 84.69 0.95 2.32 16 22 N -0.51 -11.68 10.36 -195.85 -2.03 -13.70 16 23 C 0.08 1.73 10.86 84.67 0.92 2.65 16 24 C -0.13 -4.45 5.94 31.67 0.19 -4.26 16 25 C -0.11 -3.10 6.91 31.89 0.22 -2.88 16 26 C -0.11 -2.60 6.83 31.63 0.22 -2.38 16 27 C -0.12 -3.22 5.80 31.28 0.18 -3.04 16 28 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.38 17.75 7.28 -92.71 -0.67 17.07 16 30 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 31 H 0.03 1.17 7.49 -2.39 -0.02 1.15 16 32 H 0.41 12.64 7.99 -92.71 -0.74 11.90 16 33 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.04 1.24 8.10 -2.38 -0.02 1.23 16 36 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 37 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 38 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 39 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 40 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 41 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 42 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 43 H 0.07 2.02 7.85 -2.39 -0.02 2.00 16 44 H 0.05 1.81 7.12 -2.38 -0.02 1.80 16 45 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 46 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.06 1.84 7.44 -2.39 -0.02 1.82 16 50 H 0.08 1.87 7.55 -2.39 -0.02 1.86 16 Total: -1.00 -69.21 404.60 1.65 -67.56 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -0.48 Total: 40.42 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 5.69 Total: -4.25 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -5.54 Total: -126.42 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -69.21 1.65 -67.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268040607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.445 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds