Wall clock time and date at job start Sat Apr 11 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35444 * 125.56340 * 2 1 4 4 C 1.39838 * 107.86468 * 179.84146 * 3 2 1 5 5 C 1.37877 * 107.08207 * 0.41323 * 4 3 2 6 6 C 1.46680 * 126.23149 * 179.72437 * 5 4 3 7 7 O 1.21692 * 119.99745 * 185.65810 * 6 5 4 8 8 N 1.34773 * 120.00348 * 5.65240 * 6 5 4 9 9 C 1.46493 * 120.00380 * 185.13597 * 8 6 5 10 10 C 1.52998 * 109.47452 * 180.02562 * 9 8 6 11 11 C 1.53357 * 111.22850 * 297.63470 * 10 9 8 12 12 C 1.55543 * 105.83311 * 241.97116 * 11 10 9 13 13 C 1.54682 * 104.35136 * 334.35298 * 12 11 10 14 14 C 1.54574 * 111.32314 * 177.45546 * 10 9 8 15 15 H 1.08997 * 111.91934 * 18.70698 * 14 10 9 16 16 N 1.46901 * 107.36588 * 255.62266 * 14 10 9 17 17 C 1.36933 * 125.24791 * 181.65043 * 16 14 10 18 18 H 1.08005 * 120.00050 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99951 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99809 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99871 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47398 * 60.00550 * 21 19 17 23 23 H 1.48506 * 109.46975 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47282 * 300.00101 * 21 19 17 25 25 C 1.46732 * 109.49792 * 1.65475 * 16 14 10 26 26 C 1.53870 * 111.25718 * 61.01164 * 10 9 8 27 27 N 1.35537 * 125.55827 * 180.30134 * 2 1 3 28 28 C 1.46496 * 125.68279 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.47004 * 269.69526 * 1 2 3 30 30 H 1.09000 * 109.46784 * 29.69354 * 1 2 3 31 31 H 1.09005 * 109.47102 * 149.69362 * 1 2 3 32 32 H 1.07994 * 126.07214 * 359.97438 * 3 2 1 33 33 H 1.07995 * 126.46324 * 180.12839 * 4 3 2 34 34 H 0.97006 * 119.99931 * 5.13949 * 8 6 5 35 35 H 1.09000 * 109.47491 * 300.00402 * 9 8 6 36 36 H 1.09000 * 109.47196 * 60.00250 * 9 8 6 37 37 H 1.09001 * 110.05619 * 1.97269 * 11 10 9 38 38 H 1.08995 * 110.06108 * 123.47191 * 11 10 9 39 39 H 1.09005 * 110.54010 * 215.54267 * 12 11 10 40 40 H 1.09004 * 110.23949 * 93.01658 * 12 11 10 41 41 H 1.08994 * 110.61327 * 278.65134 * 13 12 11 42 42 H 1.08997 * 110.74604 * 155.73352 * 13 12 11 43 43 H 0.96996 * 119.99533 * 179.97438 * 20 19 17 44 44 H 1.09008 * 110.04332 * 221.97050 * 25 16 14 45 45 H 1.09000 * 110.09094 * 100.53638 * 25 16 14 46 46 H 1.08999 * 110.57320 * 212.51787 * 26 10 9 47 47 H 1.08991 * 110.57337 * 335.39737 * 26 10 9 48 48 H 1.08995 * 109.47199 * 85.88949 * 28 27 2 49 49 H 1.09002 * 109.46903 * 205.89535 * 28 27 2 50 50 H 1.09000 * 109.46882 * 325.88843 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 0.0037 5 6 3.6122 -0.7020 -0.0036 6 6 4.7860 -1.5816 -0.0087 7 8 4.6439 -2.7851 -0.1190 8 7 6.0218 -1.0569 0.1085 9 6 7.1988 -1.9211 -0.0092 10 6 8.4668 -1.0823 0.1623 11 6 8.5859 -0.0239 -0.9410 12 6 9.8915 -0.3633 -1.7154 13 6 10.7632 -1.1185 -0.6848 14 6 9.7354 -1.9638 0.1086 15 1 9.5397 -2.9307 -0.3550 16 7 10.2279 -2.1076 1.4851 17 6 11.3551 -2.7923 1.8536 18 1 11.9594 -3.2811 1.1037 19 6 11.7210 -2.8582 3.1911 20 7 10.9842 -2.2630 4.1050 21 14 13.2590 -3.7916 3.6937 22 1 14.4424 -3.1913 3.0273 23 1 13.4268 -3.7123 5.1671 24 1 13.1301 -5.2139 3.2865 25 6 9.3257 -1.4044 2.4041 26 6 8.5112 -0.4154 1.5482 27 7 2.2952 -1.1026 -0.0058 28 6 1.8241 -2.4897 -0.0126 29 1 -0.3633 -0.0055 1.0276 30 1 -0.3633 0.8927 -0.5091 31 1 -0.3633 -0.8873 -0.5186 32 1 1.9545 2.1267 -0.0004 33 1 4.5025 1.3090 0.0066 34 1 6.1320 -0.1069 0.2710 35 1 7.1644 -2.6892 0.7634 36 1 7.2056 -2.3939 -0.9914 37 1 7.7181 -0.0706 -1.5991 38 1 8.6676 0.9691 -0.4993 39 1 10.3906 0.5491 -2.0420 40 1 9.6681 -1.0036 -2.5688 41 1 11.2731 -0.4162 -0.0255 42 1 11.4840 -1.7634 -1.1876 43 1 11.2397 -2.3093 5.0395 44 1 9.9034 -0.8625 3.1530 45 1 8.6580 -2.1155 2.8905 46 1 9.0157 0.5492 1.4931 47 1 7.5047 -0.2999 1.9502 48 1 1.6372 -2.8050 -1.0391 49 1 2.5828 -3.1333 0.4328 50 1 0.9018 -2.5630 0.5637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094357596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:56:42 Heat of formation + Delta-G solvation = 29.149491 kcal Electronic energy + Delta-G solvation = -29205.389053 eV Core-core repulsion = 25426.488482 eV Total energy + Delta-G solvation = -3778.900571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56887 -39.82865 -38.52603 -34.82827 -33.99522 -32.95316 -32.02925 -31.58982 -30.30481 -28.21178 -26.71970 -26.62804 -26.49433 -24.18299 -23.80415 -22.08804 -20.58487 -20.03919 -19.74632 -19.37679 -18.37875 -17.60869 -16.77097 -15.92666 -15.88118 -15.25838 -15.03562 -14.76049 -14.65906 -14.10442 -14.00225 -13.56990 -13.50763 -13.41570 -13.26035 -13.09319 -12.99877 -12.84711 -12.50076 -12.12876 -12.12329 -12.00825 -11.81083 -11.47018 -11.25424 -11.10960 -10.78611 -10.71274 -10.63670 -10.24261 -10.13128 -10.08686 -9.82350 -9.77255 -9.56255 -9.44298 -8.91201 -8.86935 -8.56686 -8.14751 -6.78893 -5.62966 -3.01856 1.40926 2.52628 2.56699 3.42462 3.42583 3.43624 3.47304 3.48061 4.51773 4.57128 4.65178 4.75741 4.89352 4.96999 5.01491 5.05594 5.06049 5.21595 5.28592 5.36461 5.45264 5.53270 5.56643 5.57374 5.58823 5.78070 5.86628 5.90801 5.94725 6.01131 6.07032 6.10481 6.11601 6.21127 6.33624 6.41342 6.46368 6.50010 6.60925 6.71782 6.72814 6.79457 6.87837 6.88811 7.07184 7.14654 7.58594 7.62256 7.70679 7.90085 8.28370 8.38624 9.27509 9.88600 10.52128 11.42547 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002771 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.236619 B =10101.496173 C =10719.378448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.036 3.964 3 C -0.205 4.205 4 C -0.140 4.140 5 C -0.048 4.048 6 C 0.585 3.415 7 O -0.553 6.553 8 N -0.709 5.709 9 C 0.143 3.857 10 C -0.081 4.081 11 C -0.112 4.112 12 C -0.122 4.122 13 C -0.130 4.130 14 C 0.173 3.827 15 H 0.047 0.953 16 N -0.596 5.596 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.163 3.837 26 C -0.134 4.134 27 N -0.408 5.408 28 C 0.064 3.936 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.402 0.598 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.251 0.749 44 H 0.093 0.907 45 H 0.012 0.988 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.074 0.926 49 H 0.106 0.894 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.388 7.854 -10.260 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.229 4.229 4 C -0.166 4.166 5 C -0.161 4.161 6 C 0.373 3.627 7 O -0.434 6.434 8 N -0.359 5.359 9 C 0.021 3.979 10 C -0.082 4.082 11 C -0.149 4.149 12 C -0.160 4.160 13 C -0.170 4.170 14 C 0.065 3.935 15 H 0.065 0.935 16 N -0.320 5.320 17 C -0.348 4.348 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C 0.038 3.962 26 C -0.172 4.172 27 N -0.081 5.081 28 C -0.077 4.077 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.237 0.763 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.030 0.970 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.125 0.875 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.450 6.526 -10.121 22.033 hybrid contribution 0.837 -0.083 0.398 0.931 sum -17.613 6.443 -9.724 21.125 Atomic orbital electron populations 1.20367 0.87886 1.03345 1.02790 1.20546 0.93730 0.85912 1.07924 1.20586 0.92471 0.97669 1.12212 1.21335 0.97886 0.91970 1.05432 1.20087 0.84325 0.93621 1.18079 1.16969 0.82364 0.86711 0.76697 1.90772 1.86267 1.14917 1.51395 1.45700 1.04951 1.12669 1.72595 1.21373 0.82115 0.92605 1.01849 1.21873 0.94176 0.95799 0.96399 1.22389 0.97725 0.98131 0.96702 1.22519 0.95836 0.99612 0.98030 1.22984 0.97988 0.99029 0.96987 1.21521 0.89631 0.94555 0.87823 0.93546 1.44325 1.26617 1.61068 0.99942 1.18987 0.99111 1.24903 0.91849 0.90606 1.24774 0.99092 1.00983 0.95760 1.69876 1.38963 1.47862 1.00370 0.86199 0.82715 0.79561 0.77300 1.21228 1.21689 1.21293 1.21431 0.90876 0.91944 0.91928 1.22804 1.00037 0.99773 0.94594 1.43749 1.04663 1.06557 1.53135 1.22260 1.01944 0.79938 1.03558 0.90810 0.89905 0.91713 0.84134 0.83838 0.76253 0.90747 0.91628 0.92166 0.91719 0.92509 0.92433 0.90971 0.92752 0.93808 0.88956 0.97013 0.92012 0.92489 0.90709 0.87536 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.54 9.88 36.01 0.36 -0.19 16 2 C 0.04 0.36 6.87 -81.95 -0.56 -0.20 16 3 C -0.21 -2.11 10.71 -39.98 -0.43 -2.54 16 4 C -0.14 -1.59 10.35 -39.12 -0.40 -2.00 16 5 C -0.05 -0.64 6.88 -81.98 -0.56 -1.20 16 6 C 0.58 8.99 7.77 -12.85 -0.10 8.89 16 7 O -0.55 -10.07 14.66 5.20 0.08 -10.00 16 8 N -0.71 -9.92 4.62 -61.62 -0.28 -10.21 16 9 C 0.14 2.31 4.43 -4.05 -0.02 2.30 16 10 C -0.08 -1.33 0.53 -153.04 -0.08 -1.41 16 11 C -0.11 -1.51 5.75 -25.19 -0.14 -1.66 16 12 C -0.12 -1.72 6.88 -24.49 -0.17 -1.89 16 13 C -0.13 -2.33 6.23 -24.82 -0.15 -2.48 16 14 C 0.17 3.45 3.60 -65.86 -0.24 3.21 16 15 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 16 N -0.60 -14.71 2.99 -162.42 -0.49 -15.20 16 17 C -0.22 -6.02 9.96 -15.06 -0.15 -6.17 16 18 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 19 C -0.01 -0.30 5.48 -17.43 -0.10 -0.39 16 20 N -0.92 -26.87 10.14 55.49 0.56 -26.31 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 C 0.16 3.89 5.65 -3.35 -0.02 3.87 16 26 C -0.13 -2.40 5.77 -25.71 -0.15 -2.55 16 27 N -0.41 -4.86 3.16 -115.62 -0.37 -5.23 16 28 C 0.06 0.64 10.16 59.84 0.61 1.24 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.35 7.74 -51.93 -0.40 -0.05 16 32 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.32 7.49 -52.49 -0.39 0.93 16 34 H 0.40 4.79 6.51 -40.82 -0.27 4.52 16 35 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 38 H 0.06 0.83 7.28 -51.93 -0.38 0.45 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.09 2.49 6.16 -51.92 -0.32 2.17 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.06 1.07 7.42 -51.93 -0.39 0.69 16 47 H 0.06 0.93 7.03 -51.93 -0.36 0.57 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.11 1.29 6.22 -51.93 -0.32 0.97 16 50 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -32.22 387.94 -10.22 -42.44 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -8.23 Total: 4.67 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.31 Total: -3.16 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.57 Total: -56.94 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.22 -10.22 -42.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094357596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.590 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds