Wall clock time and date at job start Sat Apr 11 2020 02:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36771 * 125.79682 * 2 1 4 4 C 1.47256 * 126.94707 * 0.02823 * 3 2 1 5 5 O 1.21631 * 119.99690 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00430 * 180.02562 * 4 3 2 7 7 C 1.46496 * 120.00034 * 179.97438 * 6 4 3 8 8 C 1.53007 * 109.46875 * 179.97438 * 7 6 4 9 9 C 1.53510 * 111.15906 * 299.11290 * 8 7 6 10 10 C 1.54182 * 106.59009 * 240.87863 * 9 8 7 11 11 C 1.54739 * 104.34783 * 335.43205 * 10 9 8 12 12 C 1.54664 * 111.22619 * 180.02562 * 8 7 6 13 13 H 1.09001 * 112.40596 * 19.49293 * 12 8 7 14 14 N 1.47258 * 106.10599 * 256.40642 * 12 8 7 15 15 C 1.36938 * 126.52200 * 150.10597 * 14 12 8 16 16 H 1.07993 * 119.99865 * 0.02562 * 15 14 12 17 17 C 1.38810 * 119.99764 * 180.02562 * 15 14 12 18 18 N 1.31620 * 120.00332 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99866 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46971 * 90.00257 * 19 17 15 21 21 H 1.48493 * 109.47180 * 210.00170 * 19 17 15 22 22 H 1.48500 * 109.47182 * 330.00294 * 19 17 15 23 23 C 1.47153 * 106.95615 * 330.07862 * 14 12 8 24 24 C 1.53679 * 111.17248 * 62.60331 * 8 7 6 25 25 C 1.46694 * 106.11324 * 179.76361 * 3 2 1 26 26 C 1.34487 * 106.33088 * 0.39593 * 25 3 2 27 27 N 1.34653 * 125.80217 * 180.02562 * 2 1 3 28 28 C 1.46494 * 124.85455 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47047 * 270.01796 * 1 2 3 30 30 H 1.08999 * 109.47051 * 30.02083 * 1 2 3 31 31 H 1.09006 * 109.46822 * 150.02229 * 1 2 3 32 32 H 0.96998 * 119.99729 * 359.97438 * 6 4 3 33 33 H 1.08998 * 109.47634 * 299.99285 * 7 6 4 34 34 H 1.09004 * 109.47346 * 59.99999 * 7 6 4 35 35 H 1.09003 * 110.04332 * 0.98793 * 9 8 7 36 36 H 1.09003 * 110.03954 * 122.43756 * 9 8 7 37 37 H 1.09001 * 110.80005 * 216.50233 * 10 9 8 38 38 H 1.08997 * 110.11055 * 94.02309 * 10 9 8 39 39 H 1.08996 * 110.65070 * 278.62286 * 11 10 9 40 40 H 1.09002 * 110.64890 * 155.53205 * 11 10 9 41 41 H 0.97003 * 120.00131 * 180.02562 * 18 17 15 42 42 H 1.09002 * 110.09431 * 150.06317 * 23 14 12 43 43 H 1.09002 * 110.09355 * 271.58876 * 23 14 12 44 44 H 1.08998 * 110.22846 * 241.06511 * 24 8 7 45 45 H 1.08995 * 110.22692 * 3.01871 * 24 8 7 46 46 H 1.07995 * 126.83560 * 180.26526 * 25 3 2 47 47 H 1.08002 * 125.57471 * 179.87081 * 26 25 3 48 48 H 1.08999 * 109.46989 * 270.00318 * 28 27 2 49 49 H 1.08998 * 109.47219 * 29.99503 * 28 27 2 50 50 H 1.09000 * 109.47692 * 150.00040 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 0.0006 5 8 0.6838 2.7839 0.0007 6 7 2.7849 3.5055 0.0000 7 6 2.3502 4.9045 0.0000 8 6 3.5765 5.8195 -0.0001 9 6 4.4373 5.5927 1.2506 10 6 4.4717 6.9338 2.0105 11 6 4.1999 7.9988 0.9213 12 6 3.1631 7.3099 0.0005 13 1 2.1368 7.4562 0.3372 14 7 3.3739 7.7929 -1.3745 15 6 2.6719 8.7843 -2.0066 16 1 1.8738 9.2952 -1.4887 17 6 2.9863 9.1325 -3.3131 18 7 3.9587 8.5095 -3.9444 19 14 2.0292 10.4854 -4.1751 20 1 2.6905 11.7924 -3.9307 21 1 1.9939 10.2139 -5.6346 22 1 0.6425 10.5255 -3.6454 23 6 4.4828 7.0080 -1.9399 24 6 4.4156 5.6229 -1.2725 25 6 3.6882 0.6152 0.0058 26 6 3.6096 -0.7273 -0.0001 27 7 2.2947 -1.0921 -0.0005 28 6 1.8095 -2.4743 -0.0016 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 3.7310 3.2916 -0.0005 33 1 1.7514 5.0990 -0.8897 34 1 1.7521 5.0992 0.8903 35 1 3.9982 4.8100 1.8693 36 1 5.4511 5.3159 0.9611 37 1 5.4483 7.0952 2.4668 38 1 3.6890 6.9550 2.7688 39 1 5.1123 8.2267 0.3704 40 1 3.7805 8.9025 1.3635 41 1 4.1786 8.7531 -4.8573 42 1 4.3606 6.9102 -3.0186 43 1 5.4349 7.4878 -1.7133 44 1 5.4174 5.2797 -1.0140 45 1 3.9310 4.9075 -1.9367 46 1 4.5890 1.2110 0.0114 47 1 4.4498 -1.4059 -0.0001 48 1 1.6887 -2.8178 1.0257 49 1 0.8496 -2.5220 -0.5158 50 1 2.5290 -3.1117 -0.5156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094505180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:56:45 Heat of formation + Delta-G solvation = 30.781806 kcal Electronic energy + Delta-G solvation = -29174.488305 eV Core-core repulsion = 25395.658517 eV Total energy + Delta-G solvation = -3778.829789 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45432 -39.72336 -38.40359 -34.58184 -33.79554 -32.98240 -31.68320 -31.49254 -30.22093 -28.21791 -26.73841 -26.68096 -26.39574 -24.10491 -23.58819 -22.06361 -20.40846 -20.29286 -19.46017 -19.19478 -18.07172 -17.43431 -16.90380 -15.86684 -15.75170 -15.33601 -14.97137 -14.73196 -14.40430 -14.20364 -13.82530 -13.50744 -13.45028 -13.33497 -13.15318 -12.99381 -12.82763 -12.65473 -12.56274 -12.41340 -12.19455 -11.78420 -11.61768 -11.53686 -11.10574 -10.91203 -10.75064 -10.55440 -10.43253 -10.18419 -10.01043 -9.94194 -9.80676 -9.54501 -9.44285 -9.39330 -8.80195 -8.61171 -8.57023 -8.20404 -6.80422 -5.57152 -3.02056 1.77125 2.32906 2.61347 3.44069 3.49319 3.51157 3.69422 3.78320 4.41419 4.53387 4.61466 4.73165 4.77399 4.96333 5.05314 5.08554 5.12574 5.19822 5.29944 5.44762 5.53919 5.56351 5.65929 5.73839 5.80321 5.86145 5.89375 6.01827 6.04645 6.11420 6.16550 6.20493 6.27878 6.32587 6.42029 6.53244 6.54651 6.63686 6.67663 6.79781 6.84329 6.91149 6.94524 7.00742 7.08513 7.16338 7.58988 7.69202 7.93418 7.95201 8.48825 8.65553 9.28184 9.89229 10.56511 11.42976 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.002909 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.087455 B = 9623.457046 C =10367.712019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.101 3.899 3 C -0.232 4.232 4 C 0.587 3.413 5 O -0.556 6.556 6 N -0.717 5.717 7 C 0.144 3.856 8 C -0.086 4.086 9 C -0.111 4.111 10 C -0.122 4.122 11 C -0.135 4.135 12 C 0.168 3.832 13 H 0.064 0.936 14 N -0.588 5.588 15 C -0.216 4.216 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.137 3.863 24 C -0.129 4.129 25 C -0.165 4.165 26 C -0.022 4.022 27 N -0.448 5.448 28 C 0.068 3.932 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.398 0.602 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.251 0.749 42 H 0.120 0.880 43 H 0.005 0.995 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.145 0.855 47 H 0.166 0.834 48 H 0.074 0.926 49 H 0.084 0.916 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -21.311 10.557 23.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.016 4.016 3 C -0.241 4.241 4 C 0.375 3.625 5 O -0.436 6.436 6 N -0.367 5.367 7 C 0.021 3.979 8 C -0.088 4.088 9 C -0.149 4.149 10 C -0.160 4.160 11 C -0.175 4.175 12 C 0.059 3.941 13 H 0.082 0.918 14 N -0.309 5.309 15 C -0.345 4.345 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.570 5.570 19 Si 0.744 3.256 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.207 1.207 23 C 0.012 3.988 24 C -0.168 4.168 25 C -0.189 4.189 26 C -0.147 4.147 27 N -0.125 5.125 28 C -0.074 4.074 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.078 0.922 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.137 0.863 43 H 0.023 0.977 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.163 0.837 47 H 0.183 0.817 48 H 0.092 0.908 49 H 0.103 0.897 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.466 -21.304 10.288 23.663 hybrid contribution 0.345 0.495 -0.395 0.721 sum -0.121 -20.810 9.894 23.042 Atomic orbital electron populations 1.20563 0.87174 1.04051 1.03238 1.20312 0.93740 0.85165 1.02353 1.20207 0.93140 0.92202 1.18588 1.17321 0.85390 0.83979 0.75762 1.90721 1.16720 1.84496 1.51703 1.45810 1.09580 1.06244 1.75086 1.21328 0.96112 0.78521 1.01915 1.22001 0.94368 0.96848 0.95533 1.22204 0.99186 0.97441 0.96025 1.22263 1.00324 0.95587 0.97861 1.23022 1.01055 0.97118 0.96335 1.21675 0.96127 0.89240 0.87100 0.91756 1.44566 1.37486 1.40324 1.08495 1.19106 1.11279 1.09087 0.94978 0.90448 1.24759 0.98851 1.00151 0.97006 1.69638 1.31851 1.43446 1.12073 0.86078 0.79269 0.81344 0.78874 1.21755 1.21752 1.20695 1.21860 0.89055 0.85775 1.02141 1.22698 0.97333 1.01292 0.95489 1.22038 0.95897 0.93547 1.07462 1.21655 0.85313 0.96243 1.11527 1.43526 1.06054 1.06022 1.56892 1.22070 1.01704 0.80194 1.03384 0.90633 0.87902 0.92170 0.76784 0.91064 0.92144 0.92273 0.92079 0.92653 0.92511 0.91280 0.92744 0.93799 0.86250 0.97736 0.92908 0.92546 0.83698 0.81714 0.90785 0.89690 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.52 36.01 0.34 -0.64 16 2 C 0.10 1.22 6.89 -81.88 -0.56 0.65 16 3 C -0.23 -3.23 6.29 -103.35 -0.65 -3.88 16 4 C 0.59 9.70 7.81 -12.59 -0.10 9.60 16 5 O -0.56 -10.81 14.81 5.25 0.08 -10.74 16 6 N -0.72 -10.96 4.84 -61.43 -0.30 -11.26 16 7 C 0.14 2.51 4.27 -4.04 -0.02 2.49 16 8 C -0.09 -1.48 0.65 -153.01 -0.10 -1.58 16 9 C -0.11 -1.60 5.62 -25.85 -0.15 -1.75 16 10 C -0.12 -1.80 6.83 -25.20 -0.17 -1.97 16 11 C -0.14 -2.49 6.37 -24.85 -0.16 -2.64 16 12 C 0.17 3.44 3.59 -65.68 -0.24 3.21 16 13 H 0.06 1.33 7.95 -51.93 -0.41 0.92 16 14 N -0.59 -14.77 2.98 -161.96 -0.48 -15.25 16 15 C -0.22 -5.99 10.33 -15.06 -0.16 -6.15 16 16 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 17 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 18 N -0.92 -26.90 10.06 55.49 0.56 -26.34 16 19 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 23 C 0.14 3.30 5.68 -3.22 -0.02 3.29 16 24 C -0.13 -2.45 5.82 -25.92 -0.15 -2.60 16 25 C -0.17 -1.85 10.56 -37.49 -0.40 -2.25 16 26 C -0.02 -0.20 11.34 -16.82 -0.19 -0.39 16 27 N -0.45 -4.17 3.09 -119.89 -0.37 -4.54 16 28 C 0.07 0.34 10.82 59.84 0.65 0.98 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 1.35 6.47 -51.93 -0.34 1.01 16 31 H 0.06 0.46 6.92 -51.93 -0.36 0.10 16 32 H 0.40 5.27 6.98 -40.82 -0.29 4.98 16 33 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.79 7.47 -51.93 -0.39 0.40 16 36 H 0.06 0.84 7.10 -51.93 -0.37 0.47 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.41 7.28 -51.93 -0.38 1.03 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.12 3.30 5.45 -51.93 -0.28 3.01 16 43 H 0.00 0.12 7.71 -51.93 -0.40 -0.28 16 44 H 0.05 0.88 7.11 -51.93 -0.37 0.51 16 45 H 0.06 1.09 7.62 -51.93 -0.40 0.70 16 46 H 0.15 1.36 7.70 -52.49 -0.40 0.96 16 47 H 0.17 0.98 8.06 -52.49 -0.42 0.55 16 48 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.08 0.34 6.87 -51.93 -0.36 -0.01 16 50 H 0.08 0.27 8.13 -51.93 -0.42 -0.16 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -33.15 386.48 -9.96 -43.11 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.09 Total: 5.93 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -2.16 Total: -4.07 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.59 Total: -57.39 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.15 -9.96 -43.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094505180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.889 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds