Wall clock time and date at job start Sat Apr 11 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38233 * 119.61451 * 2 1 4 4 C 1.38624 * 119.15736 * 179.97438 * 3 2 1 5 5 C 1.38679 * 118.42174 * 0.25866 * 4 3 2 6 6 C 1.50706 * 120.41630 * 179.74568 * 5 4 3 7 7 C 1.50701 * 109.46863 * 90.00158 * 6 5 4 8 8 O 1.21283 * 119.99859 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99900 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00196 * 179.97438 * 9 7 6 11 11 C 1.52991 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47474 * 180.02562 * 11 10 9 13 13 C 1.53042 * 109.45679 * 295.02546 * 12 11 10 14 14 C 1.53188 * 109.31005 * 178.59772 * 13 12 11 15 15 N 1.46927 * 108.76695 * 54.65978 * 14 13 12 16 16 C 1.36940 * 120.62932 * 126.39914 * 15 14 13 17 17 H 1.07993 * 120.00351 * 331.82897 * 16 15 14 18 18 C 1.38815 * 119.99179 * 151.82873 * 16 15 14 19 19 N 1.31611 * 120.00452 * 343.07268 * 18 16 15 20 20 Si 1.86807 * 119.99577 * 163.07496 * 18 16 15 21 21 H 1.48503 * 109.47122 * 89.99794 * 20 18 16 22 22 H 1.48495 * 109.47001 * 209.99876 * 20 18 16 23 23 H 1.48498 * 109.47172 * 329.99888 * 20 18 16 24 24 C 1.46927 * 118.73662 * 306.38276 * 15 14 13 25 25 C 1.53042 * 109.46194 * 174.97623 * 12 11 10 26 26 C 1.38177 * 119.16201 * 359.47677 * 5 4 3 27 27 N 1.31849 * 119.61995 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.47091 * 89.99700 * 1 2 3 29 29 H 1.08993 * 109.47121 * 209.99621 * 1 2 3 30 30 H 1.09004 * 109.47132 * 329.99719 * 1 2 3 31 31 H 1.07999 * 120.42426 * 0.02993 * 3 2 1 32 32 H 1.08003 * 120.78727 * 179.97438 * 4 3 2 33 33 H 1.08997 * 109.46734 * 210.00193 * 6 5 4 34 34 H 1.08996 * 109.47042 * 330.00334 * 6 5 4 35 35 H 0.97001 * 119.99873 * 0.02562 * 9 7 6 36 36 H 1.09005 * 109.47302 * 300.00688 * 10 9 7 37 37 H 1.09004 * 109.46549 * 60.00333 * 10 9 7 38 38 H 1.09005 * 109.47143 * 300.00433 * 11 10 9 39 39 H 1.09004 * 109.47261 * 60.00416 * 11 10 9 40 40 H 1.08995 * 109.45867 * 54.99740 * 12 11 10 41 41 H 1.08998 * 109.50367 * 298.56810 * 13 12 11 42 42 H 1.09002 * 109.49592 * 58.66706 * 13 12 11 43 43 H 1.08994 * 109.60056 * 294.86648 * 14 13 12 44 44 H 1.09008 * 109.70228 * 174.50990 * 14 13 12 45 45 H 0.96998 * 120.00087 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.58613 * 293.81906 * 24 15 14 47 47 H 1.08995 * 109.70097 * 173.45929 * 24 15 14 48 48 H 1.09002 * 109.49304 * 301.33534 * 25 12 11 49 49 H 1.08998 * 109.50150 * 61.39921 * 25 12 11 50 50 H 1.08000 * 119.61831 * 180.24721 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2018 0.0000 4 6 3.5763 1.1907 0.0005 5 6 4.2266 -0.0342 -0.0044 6 6 5.7323 -0.0986 -0.0098 7 6 6.2390 -0.1233 1.4092 8 8 5.4548 -0.0912 2.3338 9 7 7.5637 -0.1810 1.6507 10 6 8.0564 -0.2044 3.0302 11 6 9.5849 -0.2700 3.0248 12 6 10.0995 -0.2951 4.4655 13 6 9.7527 1.0271 5.1537 14 6 10.2384 0.9848 6.6060 15 7 11.6706 0.6571 6.6161 16 6 12.5648 1.4576 7.2755 17 1 12.3595 2.5109 7.3969 18 6 13.7353 0.9150 7.7879 19 7 13.8440 -0.3873 7.9436 20 14 15.1562 2.0335 8.2566 21 1 15.0169 2.4419 9.6776 22 1 16.4387 1.3076 8.0736 23 1 15.1426 3.2402 7.3912 24 6 12.1250 -0.5460 5.9056 25 6 11.6179 -0.4867 4.4613 26 6 3.4766 -1.1947 0.0013 27 7 2.1587 -1.1462 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5139 31 1 1.6507 2.1374 0.0005 32 1 4.1365 2.1141 0.0001 33 1 6.0553 -1.0022 -0.5268 34 1 6.1315 0.7762 -0.5231 35 1 8.1909 -0.2063 0.9112 36 1 7.7337 0.6996 3.5467 37 1 7.6567 -1.0788 3.5439 38 1 9.9080 -1.1738 2.5081 39 1 9.9843 0.6046 2.5112 40 1 9.6310 -1.1187 5.0041 41 1 10.2413 1.8490 4.6303 42 1 8.6729 1.1744 5.1357 43 1 9.6852 0.2225 7.1545 44 1 10.0826 1.9569 7.0740 45 1 14.6618 -0.7664 8.3020 46 1 11.7257 -1.4332 6.3970 47 1 13.2142 -0.5853 5.9091 48 1 11.8657 -1.4170 3.9502 49 1 12.0887 0.3492 3.9439 50 1 3.9755 -2.1526 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753600098.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:56:40 Heat of formation + Delta-G solvation = -4.980821 kcal Electronic energy + Delta-G solvation = -27202.793880 eV Core-core repulsion = 23422.413307 eV Total energy + Delta-G solvation = -3780.380573 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.78878 -39.61078 -38.00334 -35.49406 -34.35589 -33.56672 -32.58325 -31.38408 -30.44239 -29.86887 -28.50382 -26.46685 -24.93809 -23.85302 -23.12273 -22.18625 -21.76684 -20.93533 -20.30435 -19.06823 -17.26010 -17.05206 -16.84694 -16.60216 -16.06595 -15.61302 -15.18630 -14.81212 -14.73784 -14.40951 -14.00817 -13.76057 -13.58925 -13.48484 -13.37541 -13.29543 -12.84978 -12.76193 -12.66402 -12.53935 -12.39554 -12.17677 -11.88512 -11.57129 -11.33135 -11.21194 -10.88880 -10.67993 -10.47493 -10.26447 -10.16174 -10.14981 -9.99365 -9.84314 -9.73691 -9.45851 -9.38924 -9.14773 -9.05719 -8.44595 -6.62871 -5.76654 -3.18616 0.76777 1.01193 2.44012 2.97865 3.37851 3.44763 3.47155 3.53116 3.97302 4.28828 4.37818 4.51341 4.56293 4.62702 4.67438 4.91519 4.95200 5.01887 5.04716 5.20541 5.22429 5.26340 5.29916 5.39769 5.45076 5.46848 5.61172 5.67050 5.74834 5.80322 5.81639 5.92860 6.01595 6.03579 6.12816 6.22761 6.33333 6.39132 6.41056 6.57070 6.65542 6.72743 6.84991 6.88379 7.04185 7.30472 7.40529 7.68775 7.71200 7.81488 8.03800 8.48014 9.24386 9.88227 10.45487 11.31843 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.034597 B = 0.001659 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.128532 B =16877.160973 C =17112.521507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.124 3.876 3 C -0.171 4.171 4 C -0.058 4.058 5 C -0.124 4.124 6 C -0.098 4.098 7 C 0.510 3.490 8 O -0.533 6.533 9 N -0.730 5.730 10 C 0.116 3.884 11 C -0.124 4.124 12 C -0.075 4.075 13 C -0.129 4.129 14 C 0.144 3.856 15 N -0.592 5.592 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.171 3.829 25 C -0.134 4.134 26 C 0.119 3.881 27 N -0.485 5.485 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.016 0.984 44 H 0.051 0.949 45 H 0.253 0.747 46 H 0.016 0.984 47 H 0.086 0.914 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.513 0.576 -21.634 29.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.014 4.014 3 C -0.191 4.191 4 C -0.083 4.083 5 C -0.126 4.126 6 C -0.138 4.138 7 C 0.295 3.705 8 O -0.409 6.409 9 N -0.381 5.381 10 C -0.006 4.006 11 C -0.162 4.162 12 C -0.094 4.094 13 C -0.168 4.168 14 C 0.018 3.982 15 N -0.315 5.315 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.045 3.955 25 C -0.173 4.173 26 C -0.038 4.038 27 N -0.194 5.194 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.104 0.896 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.421 -0.263 -20.857 29.191 hybrid contribution 1.743 1.291 -0.024 2.170 sum -18.678 1.029 -20.881 28.035 Atomic orbital electron populations 1.20714 0.88873 1.03569 1.02970 1.21314 0.97067 0.88430 0.94574 1.21916 0.94725 0.99307 1.03145 1.21429 0.94466 0.97698 0.94754 1.20257 0.95156 0.94651 1.02560 1.20593 0.92380 1.05625 0.95245 1.20490 0.82390 0.76541 0.91078 1.90756 1.55475 1.48639 1.45987 1.46105 1.06898 1.75452 1.09695 1.21549 0.94664 1.02653 0.81771 1.21905 0.92969 1.02085 0.99282 1.20977 0.97097 0.98437 0.92923 1.22114 0.98864 0.96720 0.99151 1.20900 0.86452 0.98223 0.92654 1.44050 1.00758 1.27959 1.58774 1.19181 0.99383 0.90289 1.29221 0.91821 1.25038 1.00181 0.95679 0.98824 1.70030 1.26714 1.09957 1.48114 0.86324 0.82229 0.80046 0.78340 1.21419 1.21585 1.20546 1.20755 1.00434 0.88024 0.86310 1.22219 0.93937 0.99798 1.01354 1.22550 0.89254 0.97777 0.94205 1.67520 1.09723 1.29412 1.12781 0.90462 0.90435 0.90699 0.84795 0.84944 0.87554 0.87707 0.76645 0.91032 0.91538 0.91766 0.91590 0.91699 0.92456 0.93137 0.96606 0.92999 0.93696 0.96575 0.89605 0.93468 0.92772 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.17 36.01 0.37 -0.31 16 2 C 0.12 1.19 6.78 -82.59 -0.56 0.63 16 3 C -0.17 -1.44 9.74 -39.44 -0.38 -1.83 16 4 C -0.06 -0.50 9.86 -39.28 -0.39 -0.89 16 5 C -0.12 -1.12 4.39 -104.48 -0.46 -1.58 16 6 C -0.10 -0.65 5.85 -29.03 -0.17 -0.82 16 7 C 0.51 5.37 7.82 -10.99 -0.09 5.28 16 8 O -0.53 -8.22 16.03 5.56 0.09 -8.13 16 9 N -0.73 -6.68 5.56 -60.30 -0.33 -7.01 16 10 C 0.12 1.36 5.43 -4.05 -0.02 1.34 16 11 C -0.12 -1.46 4.80 -26.73 -0.13 -1.59 16 12 C -0.08 -1.18 2.15 -90.57 -0.19 -1.38 16 13 C -0.13 -2.20 5.14 -26.61 -0.14 -2.34 16 14 C 0.14 3.06 6.52 -3.71 -0.02 3.03 16 15 N -0.59 -14.92 2.99 -172.32 -0.52 -15.44 16 16 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 17 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 19 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 20 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 25 C -0.13 -2.44 5.36 -26.61 -0.14 -2.58 16 26 C 0.12 1.21 10.86 -17.55 -0.19 1.02 16 27 N -0.49 -5.52 10.27 -9.47 -0.10 -5.61 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 33 H 0.11 0.44 8.10 -51.93 -0.42 0.02 16 34 H 0.10 0.45 8.10 -51.93 -0.42 0.03 16 35 H 0.40 2.40 8.47 -40.82 -0.35 2.06 16 36 H 0.07 0.94 6.54 -51.93 -0.34 0.60 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.77 6.50 -51.93 -0.34 0.43 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.09 7.93 -51.92 -0.41 0.68 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -34.57 401.35 -10.47 -45.03 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.48 Total: -0.73 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: -2.77 Total: -5.13 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.33 Total: -53.79 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.57 -10.47 -45.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753600098.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.051 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds