Wall clock time and date at job start Sat Apr 11 2020 02:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38348 * 119.45941 * 2 1 4 4 C 1.38363 * 119.29806 * 179.74092 * 3 2 1 5 5 C 1.50705 * 120.85464 * 180.27362 * 4 3 2 6 6 C 1.40027 * 118.29142 * 0.53557 * 4 3 2 7 7 C 1.47836 * 120.56065 * 179.73772 * 6 4 3 8 8 O 1.21560 * 119.99535 * 269.72342 * 7 6 4 9 9 N 1.34772 * 120.00204 * 89.44524 * 7 6 4 10 10 C 1.46500 * 119.99858 * 180.27344 * 9 7 6 11 11 C 1.53006 * 109.46849 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.49522 * 305.06189 * 11 10 9 13 13 C 1.53040 * 109.49473 * 185.00185 * 11 10 9 14 14 C 1.53046 * 109.53728 * 178.68172 * 13 11 10 15 15 C 1.53188 * 109.31163 * 61.36529 * 14 13 11 16 16 N 1.46934 * 108.77495 * 305.36654 * 15 14 13 17 17 C 1.36940 * 120.62756 * 233.58679 * 16 15 14 18 18 H 1.08003 * 119.99885 * 152.79496 * 17 16 15 19 19 C 1.38804 * 120.00281 * 332.80230 * 17 16 15 20 20 N 1.31625 * 120.00555 * 159.75473 * 19 17 16 21 21 Si 1.86802 * 120.00058 * 339.74989 * 19 17 16 22 22 H 1.48503 * 109.47031 * 94.89595 * 21 19 17 23 23 H 1.48494 * 109.47495 * 214.89697 * 21 19 17 24 24 H 1.48502 * 109.46921 * 334.89588 * 21 19 17 25 25 C 1.46921 * 118.74204 * 53.60878 * 16 15 14 26 26 C 1.39519 * 118.87532 * 359.46399 * 6 4 3 27 27 C 1.50703 * 119.70967 * 180.29386 * 26 6 4 28 28 N 1.31692 * 120.57414 * 0.27668 * 26 6 4 29 29 H 1.08999 * 109.47646 * 269.98322 * 1 2 3 30 30 H 1.09000 * 109.46676 * 29.98366 * 1 2 3 31 31 H 1.08998 * 109.47199 * 149.97868 * 1 2 3 32 32 H 1.07994 * 120.35497 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46619 * 270.27037 * 5 4 3 34 34 H 1.09005 * 109.46927 * 30.26658 * 5 4 3 35 35 H 1.09001 * 109.47328 * 150.26752 * 5 4 3 36 36 H 0.97001 * 119.99784 * 0.28086 * 9 7 6 37 37 H 1.08994 * 109.47217 * 300.00034 * 10 9 7 38 38 H 1.08999 * 109.46806 * 60.00637 * 10 9 7 39 39 H 1.08998 * 109.46309 * 298.69798 * 13 11 10 40 40 H 1.09003 * 109.46282 * 58.67636 * 13 11 10 41 41 H 1.08998 * 109.49978 * 181.32030 * 14 13 11 42 42 H 1.09007 * 109.49461 * 301.38348 * 14 13 11 43 43 H 1.08993 * 109.58972 * 65.15085 * 15 14 13 44 44 H 1.08994 * 109.58683 * 185.58242 * 15 14 13 45 45 H 0.96994 * 120.00423 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.59040 * 186.60652 * 25 16 15 47 47 H 1.09001 * 109.58650 * 66.17770 * 25 16 15 48 48 H 1.09004 * 109.47266 * 90.00394 * 27 26 6 49 49 H 1.09007 * 109.47146 * 209.99686 * 27 26 6 50 50 H 1.08987 * 109.47499 * 329.99904 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2046 0.0000 4 6 3.5710 1.2007 0.0055 5 6 4.3475 2.4923 0.0118 6 6 4.2312 -0.0341 -0.0007 7 6 5.7083 -0.0968 -0.0011 8 8 6.3152 -0.1224 -1.0541 9 7 6.3821 -0.1198 1.1658 10 6 7.8461 -0.1759 1.1653 11 6 8.3563 -0.1927 2.6077 12 1 7.9537 0.6654 3.1459 13 6 9.8852 -0.1253 2.6094 14 6 10.3951 -0.1089 4.0523 15 6 9.9673 -1.4008 4.7555 16 7 8.5104 -1.5464 4.6320 17 6 7.7315 -1.7356 5.7423 18 1 6.7003 -1.4146 5.7395 19 6 8.2673 -2.3397 6.8712 20 7 7.6902 -2.1747 8.0427 21 14 9.8075 -3.3870 6.7282 22 1 11.0002 -2.5580 7.0373 23 1 9.7283 -4.5175 7.6878 24 1 9.9184 -3.9180 5.3458 25 6 7.9052 -1.4856 3.2945 26 6 3.4715 -1.2043 -0.0006 27 6 4.1627 -2.5435 -0.0005 28 7 2.1558 -1.1488 -0.0003 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6444 2.1381 0.0004 33 1 4.5346 2.8087 -1.0143 34 1 3.7720 3.2597 0.5295 35 1 5.2975 2.3426 0.5249 36 1 5.8978 -0.0994 2.0060 37 1 8.1749 -1.0802 0.6534 38 1 8.2429 0.6984 0.6493 39 1 10.2877 -0.9961 2.0920 40 1 10.2093 0.7820 2.0996 41 1 11.4828 -0.0373 4.0530 42 1 9.9737 0.7484 4.5773 43 1 10.4605 -2.2525 4.2872 44 1 10.2414 -1.3513 5.8093 45 1 8.0644 -2.5972 8.8315 46 1 6.8190 -1.4919 3.3843 47 1 8.2304 -2.3441 2.7070 48 1 4.3292 -2.8664 1.0272 49 1 3.5384 -3.2747 -0.5143 50 1 5.1201 -2.4584 -0.5143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023502242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:24 Heat of formation + Delta-G solvation = 0.437286 kcal Electronic energy + Delta-G solvation = -28893.064752 eV Core-core repulsion = 25112.919126 eV Total energy + Delta-G solvation = -3780.145626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03099 -39.33200 -38.06225 -35.00303 -34.47810 -33.96658 -33.01408 -30.99866 -30.75805 -29.36060 -28.16642 -27.63094 -25.77642 -25.24684 -22.79530 -22.01599 -21.55110 -21.28278 -20.44794 -19.43533 -17.77130 -17.27729 -16.72866 -16.16485 -15.44841 -15.32913 -15.13163 -14.96602 -14.55221 -14.12541 -13.91653 -13.62299 -13.56473 -13.47745 -13.42477 -13.25801 -13.18562 -13.00961 -12.65014 -12.51702 -12.48185 -12.24315 -12.16532 -11.95490 -11.89849 -11.68541 -11.51609 -10.86258 -10.67370 -10.57594 -10.31817 -10.15130 -9.92796 -9.70317 -9.69804 -9.57087 -9.46281 -9.08140 -8.98712 -8.65934 -7.02149 -5.98773 -3.35200 0.68446 0.97898 2.46814 3.10066 3.29556 3.42124 3.46332 3.48733 3.93967 4.29143 4.33285 4.49599 4.59460 4.77495 4.80875 5.05286 5.09690 5.11789 5.16441 5.18588 5.23453 5.26099 5.30734 5.31907 5.38513 5.43365 5.50738 5.57339 5.59001 5.71404 5.74958 5.77609 5.89324 5.93610 5.96014 5.97323 6.05508 6.07483 6.25194 6.32837 6.37930 6.42593 6.51573 6.52693 6.64545 6.66560 6.92321 7.42301 7.75385 7.91011 8.09878 8.27796 8.89211 9.67887 10.05400 11.17048 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.003058 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.216230 B = 9153.388380 C =10103.244357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.148 3.852 3 C -0.185 4.185 4 C 0.000 4.000 5 C -0.123 4.123 6 C -0.189 4.189 7 C 0.572 3.428 8 O -0.535 6.535 9 N -0.715 5.715 10 C 0.126 3.874 11 C -0.120 4.120 12 H 0.078 0.922 13 C -0.100 4.100 14 C -0.134 4.134 15 C 0.124 3.876 16 N -0.605 5.605 17 C -0.262 4.262 18 H 0.085 0.915 19 C 0.024 3.976 20 N -0.908 5.908 21 Si 0.884 3.116 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.270 1.270 25 C 0.156 3.844 26 C 0.178 3.822 27 C -0.114 4.114 28 N -0.488 5.488 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.139 0.861 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.406 0.594 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.263 0.737 46 H 0.059 0.941 47 H 0.024 0.976 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.203 7.993 -16.852 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.011 3.989 3 C -0.204 4.204 4 C -0.008 4.008 5 C -0.179 4.179 6 C -0.194 4.194 7 C 0.357 3.643 8 O -0.412 6.412 9 N -0.366 5.366 10 C 0.003 3.997 11 C -0.140 4.140 12 H 0.096 0.904 13 C -0.138 4.138 14 C -0.173 4.173 15 C -0.002 4.002 16 N -0.329 5.329 17 C -0.390 4.390 18 H 0.102 0.898 19 C -0.175 4.175 20 N -0.551 5.551 21 Si 0.714 3.286 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.195 1.195 25 C 0.030 3.970 26 C 0.040 3.960 27 C -0.171 4.171 28 N -0.199 5.199 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.157 0.843 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.241 0.759 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.042 0.958 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.241 7.146 -17.406 20.542 hybrid contribution 1.121 0.223 0.545 1.267 sum -7.120 7.369 -16.861 19.730 Atomic orbital electron populations 1.20758 0.88505 1.03586 1.03422 1.21423 0.97156 0.88085 0.92279 1.21731 0.93621 0.99512 1.05583 1.20303 0.93826 0.94372 0.92284 1.20917 1.00098 0.93444 1.03464 1.20641 0.94471 0.94665 1.09631 1.17965 0.86248 0.75997 0.84128 1.90799 1.69421 1.49759 1.31269 1.46146 1.08092 1.73939 1.08442 1.21501 0.78405 1.02066 0.97777 1.21957 0.96711 1.01850 0.93496 0.90352 1.21343 0.94143 1.01002 0.97358 1.21998 0.99141 1.00563 0.95646 1.21354 0.85189 0.94172 0.99437 1.44323 1.01850 1.84347 1.02333 1.18893 0.96433 1.33878 0.89790 0.89776 1.25260 0.97943 0.98847 0.95438 1.69830 1.41982 1.45208 0.98101 0.86936 0.83353 0.80842 0.77452 1.21705 1.23199 1.19458 1.20925 0.96981 0.92915 0.86181 1.21311 0.88876 0.94634 0.91228 1.20863 1.00078 0.92125 1.04056 1.67389 1.08822 1.29106 1.14595 0.89982 0.90568 0.90264 0.84300 0.89896 0.90296 0.90791 0.75890 0.91284 0.91626 0.92278 0.92759 0.92666 0.91732 0.95657 0.91118 0.92747 0.92242 0.95776 0.89283 0.89787 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.16 36.01 0.37 -0.39 16 2 C 0.15 1.58 6.78 -82.51 -0.56 1.02 16 3 C -0.18 -1.79 9.43 -39.49 -0.37 -2.16 16 4 C 0.00 0.00 5.95 -103.90 -0.62 -0.62 16 5 C -0.12 -1.10 9.69 36.01 0.35 -0.75 16 6 C -0.19 -2.44 5.65 -104.82 -0.59 -3.03 16 7 C 0.57 7.91 4.35 -12.34 -0.05 7.85 16 8 O -0.54 -9.04 17.10 5.31 0.09 -8.95 16 9 N -0.72 -9.01 5.33 -61.25 -0.33 -9.34 16 10 C 0.13 1.63 5.07 -4.04 -0.02 1.61 16 11 C -0.12 -1.75 2.37 -90.50 -0.21 -1.96 16 12 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.10 -1.43 5.17 -26.69 -0.14 -1.57 16 14 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 15 C 0.12 2.61 4.19 -3.71 -0.02 2.60 16 16 N -0.61 -13.75 2.77 -172.33 -0.48 -14.23 16 17 C -0.26 -7.10 10.04 -15.06 -0.15 -7.25 16 18 H 0.08 2.42 8.06 -52.48 -0.42 2.00 16 19 C 0.02 0.69 5.24 -17.43 -0.09 0.59 16 20 N -0.91 -27.45 13.97 55.49 0.78 -26.68 16 21 Si 0.88 22.13 24.35 -169.99 -4.14 17.99 16 22 H -0.29 -7.01 6.70 56.52 0.38 -6.63 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.27 -6.62 6.45 56.52 0.36 -6.26 16 25 C 0.16 2.84 5.60 -3.71 -0.02 2.82 16 26 C 0.18 2.33 6.82 -82.17 -0.56 1.77 16 27 C -0.11 -1.33 9.79 36.01 0.35 -0.97 16 28 N -0.49 -6.30 10.17 -5.42 -0.06 -6.36 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.54 8.11 -51.93 -0.42 0.12 16 35 H 0.07 0.72 7.19 -51.93 -0.37 0.35 16 36 H 0.41 4.88 7.69 -40.82 -0.31 4.56 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 43 H 0.03 0.53 6.98 -51.93 -0.36 0.17 16 44 H 0.07 1.65 4.50 -51.93 -0.23 1.42 16 45 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.06 1.06 7.14 -51.93 -0.37 0.69 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 50 H 0.08 0.95 7.07 -51.94 -0.37 0.58 16 LS Contribution 393.35 15.07 5.93 5.93 Total: -1.00 -33.03 393.35 -9.11 -42.13 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -8.40 Total: 2.36 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.50 Total: -2.85 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.08 Total: -56.60 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.03 -9.11 -42.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023502242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.569 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds