Wall clock time and date at job start Sat Apr 11 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34655 * 125.80222 * 2 1 4 4 H 0.97006 * 124.84917 * 0.03221 * 3 2 1 5 5 C 1.36439 * 110.30106 * 180.17271 * 3 2 1 6 6 C 1.34493 * 108.85592 * 359.61549 * 5 3 2 7 7 C 1.36774 * 125.80202 * 179.75183 * 2 1 3 8 8 C 1.47257 * 126.94100 * 0.02562 * 7 2 1 9 9 O 1.21632 * 120.00299 * 326.12609 * 8 7 2 10 10 N 1.34778 * 120.00015 * 146.12366 * 8 7 2 11 11 C 1.46927 * 120.62782 * 6.27445 * 10 8 7 12 12 C 1.52765 * 109.00640 * 233.58120 * 11 10 8 13 13 C 1.53039 * 109.38488 * 305.59114 * 12 11 10 14 14 C 1.53042 * 109.54121 * 61.23578 * 13 12 11 15 15 C 1.46926 * 120.63266 * 186.55017 * 10 8 7 16 16 H 1.08999 * 109.58497 * 246.15640 * 15 10 8 17 17 C 1.52994 * 109.58671 * 6.44192 * 15 10 8 18 18 H 1.08997 * 109.87430 * 28.23868 * 17 15 10 19 19 C 1.54320 * 109.88207 * 267.06468 * 17 15 10 20 20 C 1.55161 * 102.94239 * 218.38806 * 19 17 15 21 21 C 1.54904 * 101.58136 * 35.50265 * 20 19 17 22 22 N 1.47024 * 109.88340 * 149.25376 * 17 15 10 23 23 C 1.36933 * 125.65077 * 298.32242 * 22 17 15 24 24 H 1.07999 * 120.00248 * 136.22507 * 23 22 17 25 25 C 1.38807 * 119.99998 * 316.22326 * 23 22 17 26 26 N 1.31622 * 120.00265 * 169.35022 * 25 23 22 27 27 Si 1.86806 * 120.00231 * 349.35245 * 25 23 22 28 28 H 1.48503 * 109.46810 * 87.73242 * 27 25 23 29 29 H 1.48497 * 109.47402 * 207.73855 * 27 25 23 30 30 H 1.48502 * 109.46668 * 327.73635 * 27 25 23 31 31 H 1.09000 * 109.46797 * 270.24537 * 1 2 3 32 32 H 1.08996 * 109.47253 * 30.24571 * 1 2 3 33 33 H 1.08999 * 109.46674 * 150.24928 * 1 2 3 34 34 H 1.07995 * 125.57460 * 179.87782 * 5 3 2 35 35 H 1.07998 * 126.83379 * 180.25047 * 6 5 3 36 36 H 1.08992 * 109.58660 * 353.41290 * 11 10 8 37 37 H 1.08999 * 109.58884 * 113.84145 * 11 10 8 38 38 H 1.08997 * 109.56342 * 185.55322 * 12 11 10 39 39 H 1.09006 * 109.36177 * 65.50001 * 12 11 10 40 40 H 1.09009 * 109.45766 * 301.21602 * 13 12 11 41 41 H 1.09003 * 109.45270 * 181.25529 * 13 12 11 42 42 H 1.08998 * 109.49836 * 178.68450 * 14 13 12 43 43 H 1.09000 * 109.51943 * 58.60308 * 14 13 12 44 44 H 1.08997 * 110.71989 * 336.74952 * 19 17 15 45 45 H 1.09001 * 110.72433 * 100.02627 * 19 17 15 46 46 H 1.08995 * 111.00432 * 277.42793 * 20 19 17 47 47 H 1.09006 * 111.03774 * 153.58782 * 20 19 17 48 48 H 1.08995 * 110.36714 * 204.15198 * 21 20 19 49 49 H 1.09003 * 110.46337 * 81.87680 * 21 20 19 50 50 H 0.96993 * 120.00382 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6095 0.7275 -0.0039 6 6 3.6883 -0.6151 0.0021 7 6 2.3072 -1.1093 0.0048 8 6 1.8703 -2.5156 0.0104 9 8 0.8545 -2.8346 0.5984 10 7 2.5961 -3.4492 -0.6362 11 6 3.8939 -3.1070 -1.2340 12 6 3.8899 -3.5233 -2.7038 13 6 3.5188 -5.0041 -2.8113 14 6 2.1153 -5.2228 -2.2417 15 6 2.1018 -4.8271 -0.7618 16 1 2.7478 -5.4999 -0.1978 17 6 0.6741 -4.9114 -0.2184 18 1 0.1770 -3.9480 -0.3317 19 6 0.7021 -5.3194 1.2696 20 6 -0.5163 -6.2724 1.3917 21 6 -0.4898 -6.9885 0.0184 22 7 -0.0758 -5.9489 -0.9415 23 6 -0.3456 -5.9492 -2.2840 24 1 -0.2296 -6.8567 -2.8579 25 6 -0.7683 -4.7832 -2.9072 26 7 -0.8264 -4.7228 -4.2207 27 14 -1.2548 -3.2995 -1.8817 28 1 -0.0514 -2.4758 -1.6010 29 1 -2.2484 -2.4863 -2.6277 30 1 -1.8511 -3.7571 -0.6010 31 1 -0.3633 0.0044 1.0277 32 1 -0.3633 0.8877 -0.5176 33 1 -0.3633 -0.8922 -0.5100 34 1 4.4497 1.4060 -0.0066 35 1 4.5891 -1.2109 0.0049 36 1 4.0578 -2.0320 -1.1606 37 1 4.6890 -3.6367 -0.7092 38 1 4.8800 -3.3644 -3.1308 39 1 3.1586 -2.9247 -3.2470 40 1 4.2365 -5.6002 -2.2474 41 1 3.5374 -5.3079 -3.8580 42 1 1.8424 -6.2735 -2.3399 43 1 1.4003 -4.6085 -2.7890 44 1 1.6273 -5.8439 1.5083 45 1 0.5754 -4.4474 1.9112 46 1 -1.4408 -5.7098 1.5212 47 1 -0.3768 -6.9835 2.2059 48 1 -1.4818 -7.3636 -0.2330 49 1 0.2324 -7.8050 0.0283 50 1 -1.1214 -3.9079 -4.6562 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025221002.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:48 Heat of formation + Delta-G solvation = 88.132339 kcal Electronic energy + Delta-G solvation = -32002.635024 eV Core-core repulsion = 28226.292141 eV Total energy + Delta-G solvation = -3776.342883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.30187 -39.86691 -37.13942 -36.54812 -32.84720 -32.21752 -31.56278 -31.48211 -30.21075 -29.58646 -27.37518 -26.26183 -24.55667 -24.15299 -22.64214 -21.76958 -20.84951 -20.26410 -19.61181 -19.34980 -18.11943 -17.50216 -16.91434 -15.73898 -15.16505 -15.09267 -14.81188 -14.59602 -14.22620 -14.06235 -13.71575 -13.49664 -13.32930 -13.07983 -12.84084 -12.60475 -12.57095 -12.47939 -12.33530 -12.26123 -11.93514 -11.68559 -11.49614 -11.17534 -10.86717 -10.76533 -10.58284 -10.57278 -10.26783 -10.11873 -9.86766 -9.81282 -9.49783 -9.43114 -9.28169 -8.76292 -8.45854 -8.12580 -7.98760 -7.78892 -6.31064 -5.85371 -3.33693 2.05129 2.46873 3.14974 3.49949 3.57693 3.60263 3.77502 3.92538 4.67528 4.88368 4.95576 5.19151 5.24335 5.29722 5.36686 5.40666 5.45788 5.53859 5.65324 5.69979 5.71774 5.82006 5.87674 5.90984 5.93976 5.96961 6.07212 6.10828 6.18085 6.25717 6.33030 6.37552 6.46550 6.57581 6.61724 6.63895 6.77104 6.79990 6.88095 6.91011 6.97337 7.04521 7.08908 7.13522 7.37680 7.46776 7.74901 7.85906 8.10415 8.22409 8.48351 8.87943 9.08452 9.80051 10.48628 11.26497 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012238 B = 0.006238 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.427048 B = 4487.523927 C = 4773.581080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.093 3.907 3 N -0.556 5.556 4 H 0.413 0.587 5 C -0.020 4.020 6 C -0.178 4.178 7 C -0.219 4.219 8 C 0.585 3.415 9 O -0.529 6.529 10 N -0.594 5.594 11 C 0.086 3.914 12 C -0.133 4.133 13 C -0.125 4.125 14 C -0.114 4.114 15 C 0.143 3.857 16 H 0.047 0.953 17 C 0.116 3.884 18 H 0.115 0.885 19 C -0.113 4.113 20 C -0.137 4.137 21 C 0.129 3.871 22 N -0.610 5.610 23 C -0.237 4.237 24 H 0.076 0.924 25 C 0.036 3.964 26 N -0.908 5.908 27 Si 0.891 3.109 28 H -0.267 1.267 29 H -0.316 1.316 30 H -0.270 1.270 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.057 0.943 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.043 0.957 49 H 0.020 0.980 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.615 10.470 8.231 17.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.023 4.023 3 N -0.152 5.152 4 H 0.249 0.751 5 C -0.147 4.147 6 C -0.202 4.202 7 C -0.229 4.229 8 C 0.375 3.625 9 O -0.409 6.409 10 N -0.326 5.326 11 C -0.037 4.037 12 C -0.171 4.171 13 C -0.162 4.162 14 C -0.152 4.152 15 C 0.039 3.961 16 H 0.065 0.935 17 C 0.012 3.988 18 H 0.131 0.869 19 C -0.151 4.151 20 C -0.175 4.175 21 C 0.003 3.997 22 N -0.338 5.338 23 C -0.365 4.365 24 H 0.094 0.906 25 C -0.164 4.164 26 N -0.550 5.550 27 Si 0.723 3.277 28 H -0.194 1.194 29 H -0.245 1.245 30 H -0.196 1.196 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.110 0.890 34 H 0.184 0.816 35 H 0.169 0.831 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.037 0.963 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.004 10.479 8.296 16.694 hybrid contribution -0.018 1.243 0.291 1.277 sum 9.986 11.723 8.587 17.632 Atomic orbital electron populations 1.20612 0.87512 1.03970 1.03495 1.20200 0.93468 0.85636 1.03016 1.41522 1.06178 1.08195 1.59260 0.75120 1.21679 0.85623 0.96362 1.11064 1.22147 0.95927 0.93386 1.08774 1.20385 0.93110 0.92802 1.16559 1.17289 0.82774 0.83693 0.78745 1.90626 1.25503 1.80690 1.44038 1.47961 1.19988 1.10695 1.53996 1.22243 0.85018 1.02720 0.93693 1.21817 1.00946 0.98223 0.96098 1.21690 0.99040 0.94672 1.00838 1.22307 0.94501 1.04640 0.93740 1.22066 0.96748 0.79396 0.97892 0.93479 1.22638 0.90043 0.96442 0.89688 0.86866 1.22570 0.96628 0.98459 0.97433 1.22761 0.98667 0.98460 0.97633 1.21706 0.97264 0.92060 0.88630 1.44941 1.60358 1.23948 1.04516 1.18311 1.39367 0.97914 0.80912 0.90646 1.25522 0.96795 0.98856 0.95187 1.69795 1.49589 1.27884 1.07730 0.86798 0.78342 0.82942 0.79601 1.19442 1.24492 1.19582 0.90153 0.91918 0.88951 0.81587 0.83056 0.87692 0.92414 0.92023 0.91740 0.93529 0.92393 0.89351 0.88224 0.93297 0.90758 0.92077 0.92607 0.93823 0.96254 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 9.81 36.01 0.35 -1.11 16 2 C 0.09 1.39 7.17 -81.88 -0.59 0.81 16 3 N -0.56 -5.96 5.90 -9.11 -0.05 -6.02 16 4 H 0.41 2.93 8.96 -40.82 -0.37 2.57 16 5 C -0.02 -0.20 11.89 -16.83 -0.20 -0.40 16 6 C -0.18 -2.29 8.73 -37.50 -0.33 -2.62 16 7 C -0.22 -3.68 5.77 -103.35 -0.60 -4.28 16 8 C 0.58 11.72 5.90 -12.59 -0.07 11.65 16 9 O -0.53 -11.82 9.03 5.25 0.05 -11.77 16 10 N -0.59 -11.42 2.98 -166.80 -0.50 -11.92 16 11 C 0.09 1.32 5.74 -3.93 -0.02 1.30 16 12 C -0.13 -2.11 6.06 -26.83 -0.16 -2.28 16 13 C -0.12 -2.24 5.89 -26.69 -0.16 -2.40 16 14 C -0.11 -2.53 3.68 -26.61 -0.10 -2.63 16 15 C 0.14 3.02 2.97 -67.60 -0.20 2.82 16 16 H 0.05 0.96 7.37 -51.93 -0.38 0.58 16 17 C 0.12 2.69 1.45 -66.96 -0.10 2.59 16 18 H 0.12 2.85 0.75 -56.54 -0.04 2.81 16 19 C -0.11 -2.33 5.94 -24.90 -0.15 -2.48 16 20 C -0.14 -2.68 7.08 -24.58 -0.17 -2.85 16 21 C 0.13 2.81 7.23 -2.53 -0.02 2.79 16 22 N -0.61 -15.26 2.28 -162.58 -0.37 -15.63 16 23 C -0.24 -6.62 6.89 -15.06 -0.10 -6.72 16 24 H 0.08 2.28 8.04 -52.49 -0.42 1.85 16 25 C 0.04 1.05 3.56 -17.43 -0.06 0.99 16 26 N -0.91 -27.47 13.97 55.49 0.78 -26.69 16 27 Si 0.89 23.91 23.00 -169.99 -3.91 20.00 16 28 H -0.27 -6.87 3.94 56.52 0.22 -6.65 16 29 H -0.32 -8.63 7.11 56.52 0.40 -8.23 16 30 H -0.27 -7.58 7.07 56.52 0.40 -7.18 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.74 4.85 -51.93 -0.25 1.49 16 34 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.15 1.66 6.37 -52.49 -0.33 1.32 16 36 H 0.11 1.44 3.23 -51.93 -0.17 1.27 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.09 2.14 6.42 -51.93 -0.33 1.81 16 43 H 0.10 2.60 5.00 -51.93 -0.26 2.34 16 44 H 0.05 0.93 7.38 -51.93 -0.38 0.55 16 45 H 0.07 1.56 6.54 -51.93 -0.34 1.22 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 351.87 15.07 5.30 5.30 Total: -1.00 -33.57 351.87 -9.05 -42.62 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.67 Total: 8.93 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.68 Total: -4.82 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.15 Total: -60.26 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.05 Total: -11.77 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -3.91 Total: 20.00 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.57 -9.05 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025221002.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.752 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds