Wall clock time and date at job start Sat Apr 11 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38601 * 120.32633 * 2 1 4 4 N 1.31499 * 120.90015 * 180.02562 * 3 2 1 5 5 C 1.32747 * 121.64250 * 0.02562 * 4 3 2 6 6 C 1.48163 * 119.72260 * 179.97438 * 5 4 3 7 7 O 1.21515 * 120.00348 * 174.23851 * 6 5 4 8 8 N 1.34775 * 119.99922 * 354.23968 * 6 5 4 9 9 C 1.46508 * 119.99825 * 180.02562 * 8 6 5 10 10 H 1.08994 * 109.47036 * 35.00215 * 9 8 6 11 11 C 1.53000 * 109.46915 * 274.99938 * 9 8 6 12 12 C 1.52995 * 109.46967 * 155.00165 * 9 8 6 13 13 H 1.09004 * 109.49936 * 305.06340 * 12 9 8 14 14 C 1.53040 * 109.49728 * 184.99852 * 12 9 8 15 15 C 1.53049 * 109.52628 * 178.65681 * 14 12 9 16 16 C 1.53158 * 109.32511 * 61.37464 * 15 14 12 17 17 N 1.46923 * 108.76952 * 305.35093 * 16 15 14 18 18 C 1.36933 * 120.63470 * 233.59176 * 17 16 15 19 19 H 1.07999 * 120.00178 * 152.97526 * 18 17 16 20 20 C 1.38817 * 120.00191 * 332.97723 * 18 17 16 21 21 N 1.31621 * 119.99440 * 339.00344 * 20 18 17 22 22 Si 1.86794 * 120.00373 * 159.00311 * 20 18 17 23 23 H 1.48503 * 109.47138 * 94.66581 * 22 20 18 24 24 H 1.48501 * 109.47372 * 214.66805 * 22 20 18 25 25 H 1.48501 * 109.47265 * 334.66994 * 22 20 18 26 26 C 1.46924 * 118.73793 * 53.61126 * 17 16 15 27 27 C 1.39274 * 120.55613 * 0.25875 * 5 4 3 28 28 C 1.50698 * 120.47195 * 179.72429 * 27 5 4 29 29 C 1.38590 * 120.32197 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47252 * 89.99598 * 1 2 3 31 31 H 1.08990 * 109.47292 * 210.00224 * 1 2 3 32 32 H 1.09007 * 109.46695 * 329.99508 * 1 2 3 33 33 H 1.08000 * 119.55226 * 0.02831 * 3 2 1 34 34 H 0.96993 * 120.00014 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.47416 * 300.00122 * 11 9 8 36 36 H 1.09001 * 109.47277 * 60.00351 * 11 9 8 37 37 H 1.09004 * 109.47179 * 180.02562 * 11 9 8 38 38 H 1.08998 * 109.46044 * 298.66850 * 14 12 9 39 39 H 1.08996 * 109.45975 * 58.64468 * 14 12 9 40 40 H 1.08998 * 109.49310 * 181.30986 * 15 14 12 41 41 H 1.09001 * 109.49702 * 301.40750 * 15 14 12 42 42 H 1.09003 * 109.58810 * 185.57471 * 16 15 14 43 43 H 1.09000 * 109.59715 * 65.14147 * 16 15 14 44 44 H 0.96995 * 119.99778 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.58987 * 186.60032 * 26 17 16 46 46 H 1.09003 * 109.58880 * 66.17859 * 26 17 16 47 47 H 1.08999 * 109.47351 * 82.52994 * 28 27 5 48 48 H 1.08999 * 109.47329 * 202.53600 * 28 27 5 49 49 H 1.09000 * 109.46946 * 322.53282 * 28 27 5 50 50 H 1.08000 * 120.75282 * 359.97407 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1964 0.0000 4 7 3.5218 1.2095 -0.0005 5 6 4.2295 0.0864 -0.0015 6 6 5.7097 0.1509 -0.0026 7 8 6.3624 -0.8687 0.1020 8 7 6.3323 1.3405 -0.1198 9 6 7.7960 1.4041 -0.1214 10 1 8.1973 0.5244 -0.6244 11 6 8.3063 1.4445 1.3204 12 6 8.2508 2.6652 -0.8588 13 1 7.8133 2.6806 -1.8571 14 6 9.7771 2.6695 -0.9699 15 6 10.2307 3.9139 -1.7368 16 6 9.7985 5.1673 -0.9701 17 7 8.3502 5.1001 -0.7322 18 6 7.5325 6.1319 -1.1088 19 1 6.4962 5.9411 -1.3452 20 6 8.0357 7.4233 -1.1868 21 7 9.1301 7.7439 -0.5294 22 14 7.1599 8.7060 -2.2245 23 1 6.2357 9.4900 -1.3663 24 1 8.1613 9.6170 -2.8348 25 1 6.3863 8.0308 -3.2972 26 6 7.7958 3.9047 -0.0821 27 6 3.5923 -1.1520 -0.0075 28 6 4.3976 -2.4257 -0.0149 29 6 2.2067 -1.1963 -0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5140 33 1 1.6649 2.1305 0.0005 34 1 5.8114 2.1543 -0.2037 35 1 7.9049 2.3243 1.8235 36 1 7.9824 0.5461 1.8458 37 1 9.3953 1.4923 1.3192 38 1 10.2139 2.6791 0.0287 39 1 10.1050 1.7760 -1.5012 40 1 11.3161 3.9046 -1.8359 41 1 9.7745 3.9175 -2.7268 42 1 10.0311 6.0544 -1.5592 43 1 10.3238 5.2116 -0.0160 44 1 9.4819 8.6461 -0.5841 45 1 6.7072 3.9587 -0.0852 46 1 8.1578 3.8459 0.9443 47 1 4.7055 -2.6669 1.0024 48 1 3.7891 -3.2380 -0.4126 49 1 5.2806 -2.2936 -0.6402 50 1 1.6844 -2.1416 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025489864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:31 Heat of formation + Delta-G solvation = 5.806772 kcal Electronic energy + Delta-G solvation = -28919.151204 eV Core-core repulsion = 25139.238417 eV Total energy + Delta-G solvation = -3779.912787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.95389 -39.38197 -37.92782 -35.29086 -34.06833 -33.60334 -32.87475 -31.00434 -30.42169 -28.29271 -27.76357 -27.54489 -25.26393 -24.31271 -23.57615 -22.22389 -21.78673 -20.76716 -20.12720 -18.70290 -17.97254 -17.06347 -16.62036 -15.76176 -15.30809 -15.21175 -14.81061 -14.67770 -14.51034 -14.17221 -13.87438 -13.64657 -13.40809 -13.37483 -13.31099 -13.02362 -12.87296 -12.66917 -12.52612 -12.40920 -12.27729 -12.21671 -11.99965 -11.74290 -11.55722 -10.99615 -10.85466 -10.53111 -10.42898 -10.18076 -10.12465 -10.02639 -9.84843 -9.82809 -9.62789 -9.42986 -9.35749 -9.12774 -8.74598 -8.41721 -6.64938 -5.77586 -3.16117 0.47621 0.99197 2.71294 3.20814 3.38637 3.46411 3.49444 3.69666 4.05799 4.40597 4.47780 4.51685 4.62909 4.71918 4.90169 5.08236 5.15737 5.18433 5.26529 5.36372 5.42060 5.47181 5.49936 5.58267 5.62079 5.62653 5.72832 5.75459 5.86743 5.89921 5.90749 6.04816 6.14770 6.17311 6.27002 6.29305 6.38293 6.44266 6.54823 6.63792 6.70328 6.74349 6.83467 6.89472 7.03017 7.40650 7.48376 7.66148 7.78491 7.82939 8.29780 8.46116 9.23074 9.87834 10.44601 11.31122 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.003189 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.463032 B = 8779.410871 C =10665.482773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.114 4.114 3 C 0.091 3.909 4 N -0.446 5.446 5 C 0.067 3.933 6 C 0.569 3.431 7 O -0.537 6.537 8 N -0.699 5.699 9 C 0.148 3.852 10 H 0.083 0.917 11 C -0.164 4.164 12 C -0.113 4.113 13 H 0.072 0.928 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.170 3.830 17 N -0.590 5.590 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.151 3.849 27 C -0.070 4.070 28 C -0.115 4.115 29 C -0.092 4.092 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.162 0.838 34 H 0.412 0.588 35 H 0.066 0.934 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.082 0.918 43 H 0.018 0.982 44 H 0.253 0.747 45 H 0.049 0.951 46 H 0.026 0.974 47 H 0.078 0.922 48 H 0.057 0.943 49 H 0.099 0.901 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 -18.405 1.276 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.116 4.116 3 C -0.069 4.069 4 N -0.156 5.156 5 C -0.071 4.071 6 C 0.355 3.645 7 O -0.415 6.415 8 N -0.349 5.349 9 C 0.044 3.956 10 H 0.101 0.899 11 C -0.222 4.222 12 C -0.134 4.134 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.044 3.956 17 N -0.312 5.312 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.543 5.543 22 Si 0.727 3.273 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.024 3.976 27 C -0.073 4.073 28 C -0.171 4.171 29 C -0.118 4.118 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.179 0.821 34 H 0.250 0.750 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.043 0.957 47 H 0.096 0.904 48 H 0.076 0.924 49 H 0.117 0.883 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.175 -18.125 1.359 21.336 hybrid contribution -1.231 0.453 -0.532 1.416 sum -12.406 -17.671 0.827 21.607 Atomic orbital electron populations 1.20778 0.89851 1.03434 1.02921 1.21176 0.97821 0.94121 0.98488 1.22714 0.89299 0.97785 0.97149 1.67574 1.08763 1.30070 1.09207 1.21070 0.94453 0.89154 1.02439 1.17841 0.85682 0.84032 0.76987 1.90707 1.66100 1.33880 1.50802 1.46084 1.08009 1.09145 1.71679 1.21092 0.78433 0.99287 0.96805 0.89930 1.22257 1.01625 1.02097 0.96265 1.21949 0.96882 0.94517 1.00007 0.90967 1.21418 0.94251 0.97764 1.00362 1.22166 0.98816 0.97319 0.99814 1.20750 0.83563 0.94646 0.96607 1.44033 1.03393 1.15814 1.68007 1.19156 0.94117 0.85938 1.39067 0.91730 1.24966 0.98220 0.96799 0.99565 1.70090 1.24158 1.18888 1.41167 0.86369 0.78793 0.81538 0.80644 1.21508 1.21595 1.20440 1.20999 0.96601 0.86185 0.93782 1.20938 0.94261 0.96365 0.95760 1.21031 1.00238 0.91850 1.04025 1.21415 0.92964 0.98477 0.98907 0.90482 0.91139 0.90756 0.82071 0.75045 0.91523 0.92897 0.91349 0.92216 0.93526 0.93225 0.92779 0.89949 0.96422 0.93723 0.93248 0.95675 0.90378 0.92408 0.88258 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.03 36.01 0.36 -0.23 16 2 C -0.11 -0.98 5.91 -104.36 -0.62 -1.60 16 3 C 0.09 0.95 10.86 -17.56 -0.19 0.76 16 4 N -0.45 -5.98 9.56 -9.80 -0.09 -6.07 16 5 C 0.07 0.92 6.75 -83.01 -0.56 0.36 16 6 C 0.57 8.68 7.71 -12.18 -0.09 8.59 16 7 O -0.54 -8.80 13.00 5.35 0.07 -8.73 16 8 N -0.70 -10.59 5.00 -54.65 -0.27 -10.86 16 9 C 0.15 2.26 2.35 -67.93 -0.16 2.10 16 10 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 11 C -0.16 -2.40 8.76 37.16 0.33 -2.07 16 12 C -0.11 -1.93 2.27 -90.50 -0.21 -2.14 16 13 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 14 C -0.10 -1.67 4.89 -26.69 -0.13 -1.80 16 15 C -0.14 -2.70 6.08 -26.62 -0.16 -2.87 16 16 C 0.17 4.04 5.34 -3.73 -0.02 4.02 16 17 N -0.59 -14.64 2.99 -172.34 -0.52 -15.16 16 18 C -0.25 -6.93 9.57 -15.06 -0.14 -7.08 16 19 H 0.06 1.74 7.91 -52.49 -0.42 1.33 16 20 C 0.00 0.09 4.81 -17.43 -0.08 0.01 16 21 N -0.90 -26.13 11.38 55.49 0.63 -25.50 16 22 Si 0.90 21.68 29.60 -169.99 -5.03 16.64 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.15 3.09 5.26 -3.71 -0.02 3.07 16 27 C -0.07 -0.81 5.93 -104.09 -0.62 -1.43 16 28 C -0.11 -1.20 8.70 36.00 0.31 -0.89 16 29 C -0.09 -0.83 9.51 -39.31 -0.37 -1.21 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 32 H 0.07 0.33 8.09 -51.92 -0.42 -0.09 16 33 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.41 6.36 6.63 -40.82 -0.27 6.09 16 35 H 0.07 1.02 6.23 -51.93 -0.32 0.70 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.94 6.60 -51.93 -0.34 0.60 16 38 H 0.06 0.98 6.63 -51.93 -0.34 0.64 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.08 2.19 6.11 -51.93 -0.32 1.88 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.05 1.00 6.75 -51.93 -0.35 0.65 16 46 H 0.03 0.53 6.06 -51.93 -0.31 0.21 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 0.46 8.05 -51.93 -0.42 0.04 16 49 H 0.10 1.24 5.92 -51.93 -0.31 0.93 16 50 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -31.19 387.79 -9.75 -40.94 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.00 Total: 5.30 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -2.38 Total: -2.41 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.25 Total: -57.59 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.07 Total: -8.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.19 -9.75 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025489864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.745 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds