Wall clock time and date at job start Sat Apr 11 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38352 * 119.46614 * 2 1 4 4 C 1.38360 * 119.30648 * 179.72228 * 3 2 1 5 5 C 1.50695 * 120.85558 * 180.25322 * 4 3 2 6 6 C 1.40028 * 118.28425 * 0.51595 * 4 3 2 7 7 C 1.47840 * 120.55289 * 179.73786 * 6 4 3 8 8 O 1.21552 * 119.99505 * 269.71818 * 7 6 4 9 9 N 1.34774 * 120.00332 * 89.72810 * 7 6 4 10 10 C 1.46927 * 120.62692 * 0.02562 * 9 7 6 11 11 C 1.53193 * 108.77663 * 233.59122 * 10 9 7 12 12 C 1.53046 * 109.31028 * 305.36644 * 11 10 9 13 13 H 1.08993 * 109.46296 * 301.34732 * 12 11 10 14 14 N 1.46504 * 109.45842 * 181.38506 * 12 11 10 15 15 C 1.36933 * 119.99987 * 84.93087 * 14 12 11 16 16 H 1.07998 * 119.99830 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00030 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00171 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00016 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47103 * 89.99865 * 19 17 15 21 21 H 1.48493 * 109.47309 * 209.99945 * 19 17 15 22 22 H 1.48503 * 109.46920 * 329.99854 * 19 17 15 23 23 C 1.53046 * 109.53579 * 61.36644 * 12 11 10 24 24 H 1.09004 * 109.49895 * 58.58445 * 23 12 11 25 25 C 1.52998 * 109.49545 * 178.64917 * 23 12 11 26 26 C 1.46919 * 120.63129 * 179.97438 * 9 7 6 27 27 C 1.39516 * 118.88124 * 359.46475 * 6 4 3 28 28 C 1.50704 * 119.71189 * 180.27495 * 27 6 4 29 29 N 1.31696 * 120.56950 * 0.29377 * 27 6 4 30 30 H 1.08998 * 109.47477 * 270.02449 * 1 2 3 31 31 H 1.09007 * 109.46947 * 30.02237 * 1 2 3 32 32 H 1.09002 * 109.47409 * 150.02307 * 1 2 3 33 33 H 1.08005 * 120.34305 * 359.97402 * 3 2 1 34 34 H 1.09000 * 109.46874 * 270.26801 * 5 4 3 35 35 H 1.08996 * 109.47226 * 30.27102 * 5 4 3 36 36 H 1.08998 * 109.46951 * 150.27061 * 5 4 3 37 37 H 1.09000 * 109.58699 * 353.37880 * 10 9 7 38 38 H 1.08997 * 109.58189 * 113.66082 * 10 9 7 39 39 H 1.09001 * 109.49998 * 185.42005 * 11 10 9 40 40 H 1.08998 * 109.50010 * 65.31705 * 11 10 9 41 41 H 0.97002 * 119.99384 * 264.93462 * 14 12 11 42 42 H 0.96992 * 120.00036 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47430 * 59.99745 * 25 23 12 44 44 H 1.09002 * 109.47514 * 179.97438 * 25 23 12 45 45 H 1.09007 * 109.47298 * 299.99832 * 25 23 12 46 46 H 1.09002 * 109.59216 * 6.61793 * 26 9 7 47 47 H 1.09004 * 109.70105 * 246.26484 * 26 9 7 48 48 H 1.09002 * 109.47112 * 90.00138 * 28 27 6 49 49 H 1.09002 * 109.46966 * 209.99622 * 28 27 6 50 50 H 1.08998 * 109.46989 * 329.99522 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 0.0058 5 6 4.3476 2.4922 0.0118 6 6 4.2312 -0.0342 0.0005 7 6 5.7083 -0.0968 0.0005 8 8 6.3154 -0.1230 -1.0522 9 7 6.3816 -0.1250 1.1677 10 6 5.6616 -0.0947 2.4481 11 6 6.2185 1.0503 3.2999 12 6 7.7346 0.8896 3.4349 13 1 7.9584 -0.0740 3.8924 14 7 8.2662 1.9645 4.2765 15 6 8.2615 1.8329 5.6395 16 1 7.8662 0.9365 6.0940 17 6 8.7657 2.8511 6.4369 18 7 8.7616 2.7243 7.7470 19 14 9.4501 4.4012 5.6507 20 1 8.3616 5.3994 5.4952 21 1 10.5184 4.9643 6.5148 22 1 10.0143 4.0721 4.3170 23 6 8.3819 0.9590 2.0498 24 1 8.1378 1.9126 1.5815 25 6 9.9002 0.8321 2.1888 26 6 7.8494 -0.1878 1.1838 27 6 3.4715 -1.2044 0.0009 28 6 4.1626 -2.5436 0.0015 29 7 2.1557 -1.1487 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6444 2.1381 -0.0004 34 1 4.5350 2.8081 -1.0145 35 1 3.7720 3.2598 0.5289 36 1 5.2974 2.3427 0.5251 37 1 4.5994 0.0684 2.2662 38 1 5.8020 -1.0420 2.9686 39 1 5.7606 1.0242 4.2887 40 1 5.9950 2.0030 2.8199 41 1 8.6215 2.7694 3.8681 42 1 9.1136 3.4360 8.3041 43 1 10.1438 -0.1221 2.6561 44 1 10.3608 0.8811 1.2021 45 1 10.2778 1.6464 2.8073 46 1 8.2308 -0.0861 0.1677 47 1 8.1718 -1.1416 1.6013 48 1 4.3292 -2.8661 1.0293 49 1 3.5383 -3.2748 -0.5121 50 1 5.1201 -2.4586 -0.5124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036115021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:21 Heat of formation + Delta-G solvation = -1.063597 kcal Electronic energy + Delta-G solvation = -29705.227575 eV Core-core repulsion = 25925.016866 eV Total energy + Delta-G solvation = -3780.210709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20723 -39.64117 -37.76353 -34.83871 -34.44190 -33.99588 -32.80494 -31.61676 -29.94024 -29.40241 -28.22653 -27.71728 -26.30362 -25.08904 -22.91519 -22.26832 -21.62887 -21.30874 -20.18845 -19.34058 -17.67515 -17.41142 -17.15030 -16.33095 -15.29328 -15.07453 -15.00850 -14.70904 -14.55889 -14.32549 -13.84971 -13.58134 -13.54197 -13.50636 -13.35135 -13.25947 -13.01337 -12.84962 -12.53828 -12.49683 -12.46322 -12.29233 -12.02581 -11.96526 -11.85323 -11.81179 -11.47758 -11.09362 -10.94730 -10.74890 -10.58282 -10.29250 -10.22972 -9.83464 -9.68289 -9.63197 -9.55731 -9.02264 -8.92390 -8.62861 -7.32739 -5.82488 -3.18169 0.68003 0.97543 2.45377 2.92763 3.32344 3.35439 3.39696 3.41350 3.89488 4.26635 4.33100 4.40779 4.53709 4.80088 4.93344 4.98109 5.04402 5.12346 5.13648 5.17352 5.20376 5.27057 5.28502 5.34607 5.38612 5.40892 5.41591 5.50124 5.55409 5.60066 5.63375 5.77886 5.79673 5.84791 5.89438 5.91236 5.96921 6.00749 6.06600 6.22829 6.23551 6.33439 6.41876 6.44951 6.63181 6.72198 6.88144 7.33074 7.72897 7.92899 8.04734 8.36561 9.14607 9.87342 10.07121 11.35792 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.003374 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.151194 B = 8297.903112 C = 8966.383436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.145 3.855 3 C -0.182 4.182 4 C 0.001 3.999 5 C -0.125 4.125 6 C -0.179 4.179 7 C 0.573 3.427 8 O -0.539 6.539 9 N -0.597 5.597 10 C 0.109 3.891 11 C -0.150 4.150 12 C 0.189 3.811 13 H 0.058 0.942 14 N -0.745 5.745 15 C -0.243 4.243 16 H 0.090 0.910 17 C 0.006 3.994 18 N -0.933 5.933 19 Si 0.882 3.118 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.113 4.113 24 H 0.068 0.932 25 C -0.137 4.137 26 C 0.119 3.881 27 C 0.171 3.829 28 C -0.110 4.110 29 N -0.488 5.488 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.083 0.917 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 -5.924 -16.971 21.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.008 3.992 3 C -0.202 4.202 4 C -0.007 4.007 5 C -0.181 4.181 6 C -0.184 4.184 7 C 0.359 3.641 8 O -0.416 6.416 9 N -0.329 5.329 10 C -0.015 4.015 11 C -0.191 4.191 12 C 0.079 3.921 13 H 0.076 0.924 14 N -0.386 5.386 15 C -0.373 4.373 16 H 0.108 0.892 17 C -0.190 4.190 18 N -0.581 5.581 19 Si 0.713 3.287 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.133 4.133 24 H 0.086 0.914 25 C -0.195 4.195 26 C -0.003 4.003 27 C 0.033 3.967 28 C -0.168 4.168 29 N -0.199 5.199 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.749 -6.789 -17.253 22.501 hybrid contribution 0.862 2.119 -0.248 2.301 sum -11.887 -4.670 -17.501 21.666 Atomic orbital electron populations 1.20748 0.88511 1.03571 1.03364 1.21391 0.97105 0.88053 0.92659 1.21756 0.93629 0.99559 1.05243 1.20317 0.93789 0.94451 0.92136 1.20944 1.00354 0.93410 1.03428 1.20580 0.94480 0.94647 1.08717 1.18025 0.86356 0.75959 0.83725 1.90780 1.69290 1.50583 1.30981 1.48171 1.07362 1.71540 1.05817 1.21850 0.95901 1.00323 0.83379 1.22650 1.00005 0.96750 0.99724 1.20167 0.89972 0.93139 0.88788 0.92447 1.42762 1.74178 1.18028 1.03658 1.19043 1.34506 1.03349 0.80356 0.89210 1.24654 1.01124 0.98080 0.95106 1.69692 1.51895 1.33910 1.02574 0.86594 0.78943 0.84688 0.78520 1.21192 1.21780 1.20301 1.21800 0.96449 0.98223 0.96848 0.91354 1.21673 0.94026 1.03082 1.00751 1.21749 0.78082 0.98836 1.01627 1.21249 0.88898 0.94517 0.92080 1.20814 1.00101 0.92238 1.03600 1.67364 1.08749 1.29135 1.14663 0.90046 0.90559 0.90323 0.84271 0.89924 0.90217 0.90583 0.90781 0.91069 0.90010 0.92308 0.80633 0.93041 0.92507 0.93535 0.91346 0.89151 0.91055 0.89760 0.89853 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.16 36.00 0.37 -0.37 16 2 C 0.15 1.53 6.78 -82.51 -0.56 0.97 16 3 C -0.18 -1.83 9.43 -39.49 -0.37 -2.21 16 4 C 0.00 0.01 5.80 -103.91 -0.60 -0.59 16 5 C -0.12 -1.33 9.69 36.00 0.35 -0.98 16 6 C -0.18 -2.34 3.65 -104.82 -0.38 -2.73 16 7 C 0.57 8.20 4.23 -12.33 -0.05 8.15 16 8 O -0.54 -9.26 16.51 5.32 0.09 -9.17 16 9 N -0.60 -7.93 2.97 -173.85 -0.52 -8.45 16 10 C 0.11 1.40 6.34 -3.71 -0.02 1.37 16 11 C -0.15 -2.34 5.66 -26.61 -0.15 -2.49 16 12 C 0.19 3.29 2.19 -67.88 -0.15 3.14 16 13 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 14 N -0.74 -16.28 4.21 -53.38 -0.22 -16.51 16 15 C -0.24 -6.45 10.41 -15.06 -0.16 -6.60 16 16 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 17 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 18 N -0.93 -28.48 13.97 55.49 0.78 -27.71 16 19 Si 0.88 21.45 27.74 -169.99 -4.71 16.73 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.30 6.52 56.52 0.37 -5.94 16 23 C -0.11 -1.68 2.46 -90.47 -0.22 -1.90 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 C -0.14 -2.01 9.03 37.16 0.34 -1.67 16 26 C 0.12 1.58 5.72 -3.68 -0.02 1.56 16 27 C 0.17 2.14 6.82 -82.17 -0.56 1.58 16 28 C -0.11 -1.16 9.79 36.01 0.35 -0.81 16 29 N -0.49 -6.02 10.17 -5.42 -0.06 -6.08 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.39 8.07 -51.92 -0.42 -0.03 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.08 0.93 7.19 -51.93 -0.37 0.56 16 37 H 0.07 0.92 6.22 -51.93 -0.32 0.60 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.36 7.92 5.36 -40.82 -0.22 7.70 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.16 7.36 -51.93 -0.38 0.77 16 46 H 0.09 1.24 7.00 -51.93 -0.36 0.88 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.08 0.87 7.07 -51.93 -0.37 0.50 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -32.27 396.56 -8.99 -41.26 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.37 Total: 7.43 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.95 Total: -3.49 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: -0.02 Total: -58.75 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.27 -8.99 -41.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036115021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.198 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds