Wall clock time and date at job start Sat Apr 11 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38352 * 119.46614 * 2 1 4 4 C 1.38360 * 119.30648 * 179.72228 * 3 2 1 5 5 C 1.50695 * 120.85558 * 180.25322 * 4 3 2 6 6 C 1.40028 * 118.28425 * 0.51595 * 4 3 2 7 7 C 1.47840 * 120.55289 * 179.73786 * 6 4 3 8 8 O 1.21552 * 119.99505 * 269.71818 * 7 6 4 9 9 N 1.34774 * 120.00332 * 89.72810 * 7 6 4 10 10 C 1.46927 * 120.62692 * 0.02562 * 9 7 6 11 11 C 1.53193 * 108.77663 * 233.59122 * 10 9 7 12 12 C 1.53046 * 109.31028 * 305.36644 * 11 10 9 13 13 H 1.08993 * 109.46296 * 301.34732 * 12 11 10 14 14 N 1.46504 * 109.45842 * 181.38506 * 12 11 10 15 15 C 1.36933 * 119.99987 * 84.93087 * 14 12 11 16 16 H 1.07998 * 119.99830 * 0.02562 * 15 14 12 17 17 C 1.38811 * 120.00030 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00171 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00016 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47103 * 89.99865 * 19 17 15 21 21 H 1.48493 * 109.47309 * 209.99945 * 19 17 15 22 22 H 1.48503 * 109.46920 * 329.99854 * 19 17 15 23 23 C 1.53046 * 109.53579 * 61.36644 * 12 11 10 24 24 H 1.09004 * 109.49895 * 58.58445 * 23 12 11 25 25 C 1.52998 * 109.49545 * 178.64917 * 23 12 11 26 26 C 1.46919 * 120.63129 * 179.97438 * 9 7 6 27 27 C 1.39516 * 118.88124 * 359.46475 * 6 4 3 28 28 C 1.50704 * 119.71189 * 180.27495 * 27 6 4 29 29 N 1.31696 * 120.56950 * 0.29377 * 27 6 4 30 30 H 1.08998 * 109.47477 * 270.02449 * 1 2 3 31 31 H 1.09007 * 109.46947 * 30.02237 * 1 2 3 32 32 H 1.09002 * 109.47409 * 150.02307 * 1 2 3 33 33 H 1.08005 * 120.34305 * 359.97402 * 3 2 1 34 34 H 1.09000 * 109.46874 * 270.26801 * 5 4 3 35 35 H 1.08996 * 109.47226 * 30.27102 * 5 4 3 36 36 H 1.08998 * 109.46951 * 150.27061 * 5 4 3 37 37 H 1.09000 * 109.58699 * 353.37880 * 10 9 7 38 38 H 1.08997 * 109.58189 * 113.66082 * 10 9 7 39 39 H 1.09001 * 109.49998 * 185.42005 * 11 10 9 40 40 H 1.08998 * 109.50010 * 65.31705 * 11 10 9 41 41 H 0.97002 * 119.99384 * 264.93462 * 14 12 11 42 42 H 0.96992 * 120.00036 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47430 * 59.99745 * 25 23 12 44 44 H 1.09002 * 109.47514 * 179.97438 * 25 23 12 45 45 H 1.09007 * 109.47298 * 299.99832 * 25 23 12 46 46 H 1.09002 * 109.59216 * 6.61793 * 26 9 7 47 47 H 1.09004 * 109.70105 * 246.26484 * 26 9 7 48 48 H 1.09002 * 109.47112 * 90.00138 * 28 27 6 49 49 H 1.09002 * 109.46966 * 209.99622 * 28 27 6 50 50 H 1.08998 * 109.46989 * 329.99522 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2007 0.0058 5 6 4.3476 2.4922 0.0118 6 6 4.2312 -0.0342 0.0005 7 6 5.7083 -0.0968 0.0005 8 8 6.3154 -0.1230 -1.0522 9 7 6.3816 -0.1250 1.1677 10 6 5.6616 -0.0947 2.4481 11 6 6.2185 1.0503 3.2999 12 6 7.7346 0.8896 3.4349 13 1 7.9584 -0.0740 3.8924 14 7 8.2662 1.9645 4.2765 15 6 8.2615 1.8329 5.6395 16 1 7.8662 0.9365 6.0940 17 6 8.7657 2.8511 6.4369 18 7 8.7616 2.7243 7.7470 19 14 9.4501 4.4012 5.6507 20 1 8.3616 5.3994 5.4952 21 1 10.5184 4.9643 6.5148 22 1 10.0143 4.0721 4.3170 23 6 8.3819 0.9590 2.0498 24 1 8.1378 1.9126 1.5815 25 6 9.9002 0.8321 2.1888 26 6 7.8494 -0.1878 1.1838 27 6 3.4715 -1.2044 0.0009 28 6 4.1626 -2.5436 0.0015 29 7 2.1557 -1.1487 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6444 2.1381 -0.0004 34 1 4.5350 2.8081 -1.0145 35 1 3.7720 3.2598 0.5289 36 1 5.2974 2.3427 0.5251 37 1 4.5994 0.0684 2.2662 38 1 5.8020 -1.0420 2.9686 39 1 5.7606 1.0242 4.2887 40 1 5.9950 2.0030 2.8199 41 1 8.6215 2.7694 3.8681 42 1 9.1136 3.4360 8.3041 43 1 10.1438 -0.1221 2.6561 44 1 10.3608 0.8811 1.2021 45 1 10.2778 1.6464 2.8073 46 1 8.2308 -0.0861 0.1677 47 1 8.1718 -1.1416 1.6013 48 1 4.3292 -2.8661 1.0293 49 1 3.5383 -3.2748 -0.5121 50 1 5.1201 -2.4586 -0.5124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036115021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:21 Heat of formation + Delta-G solvation = -20.333592 kcal Electronic energy + Delta-G solvation = -29706.063184 eV Core-core repulsion = 25925.016866 eV Total energy + Delta-G solvation = -3781.046319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.16713 -40.69195 -39.05622 -36.31724 -35.34335 -34.92902 -34.22568 -33.21635 -31.55757 -30.16712 -29.13098 -28.52413 -27.46357 -26.54548 -24.36647 -23.26088 -23.02102 -22.17882 -21.46009 -20.54410 -19.46760 -18.50228 -18.10733 -17.45466 -16.78460 -16.12070 -16.04094 -15.88531 -15.79038 -15.50465 -15.25932 -14.89521 -14.62637 -14.44515 -14.32623 -14.20169 -14.10533 -13.88599 -13.78624 -13.72670 -13.45628 -13.19540 -13.04994 -13.00839 -12.95082 -12.85749 -12.72611 -12.64880 -12.45100 -12.11380 -12.05203 -11.89140 -11.76768 -11.31755 -11.20167 -10.93489 -10.54440 -10.46763 -9.81370 -9.77736 -9.27581 -7.99493 -5.31641 -0.17481 0.13129 1.35617 1.38525 1.40134 1.47739 1.85802 2.49775 2.55518 3.11048 3.30714 3.33144 3.49081 3.53875 3.59256 3.75428 3.93478 3.98457 4.03765 4.21021 4.28892 4.30231 4.31665 4.44697 4.47921 4.51768 4.55196 4.56810 4.60422 4.67159 4.71646 4.75011 4.79982 4.81384 4.89278 4.91544 4.99192 5.06098 5.10320 5.12486 5.16998 5.20053 5.23400 5.36300 5.42716 5.56696 5.64292 5.80666 6.22388 6.24569 6.88307 6.95420 7.10736 7.87218 8.05731 9.22106 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.015346 B = 0.003374 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.151194 B = 8297.903112 C = 8966.383436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.139 3.861 3 C -0.179 4.179 4 C -0.009 4.009 5 C -0.122 4.122 6 C -0.201 4.201 7 C 0.580 3.420 8 O -0.571 6.571 9 N -0.594 5.594 10 C 0.120 3.880 11 C -0.140 4.140 12 C 0.184 3.816 13 H 0.049 0.951 14 N -0.746 5.746 15 C -0.218 4.218 16 H 0.060 0.940 17 C -0.062 4.062 18 N -0.985 5.985 19 Si 0.947 3.053 20 H -0.282 1.282 21 H -0.301 1.301 22 H -0.252 1.252 23 C -0.102 4.102 24 H 0.065 0.935 25 C -0.135 4.135 26 C 0.124 3.876 27 C 0.160 3.840 28 C -0.107 4.107 29 N -0.506 5.506 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.363 0.637 42 H 0.256 0.744 43 H 0.058 0.942 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.897 -5.520 -18.989 24.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.002 3.998 3 C -0.199 4.199 4 C -0.017 4.017 5 C -0.179 4.179 6 C -0.206 4.206 7 C 0.368 3.632 8 O -0.451 6.451 9 N -0.324 5.324 10 C -0.003 4.003 11 C -0.181 4.181 12 C 0.076 3.924 13 H 0.067 0.933 14 N -0.388 5.388 15 C -0.349 4.349 16 H 0.078 0.922 17 C -0.253 4.253 18 N -0.636 5.636 19 Si 0.775 3.225 20 H -0.209 1.209 21 H -0.228 1.228 22 H -0.177 1.177 23 C -0.122 4.122 24 H 0.083 0.917 25 C -0.193 4.193 26 C 0.002 3.998 27 C 0.022 3.978 28 C -0.164 4.164 29 N -0.217 5.217 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.187 0.813 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.196 0.804 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.113 0.887 49 H 0.110 0.890 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.057 -6.413 -19.325 24.742 hybrid contribution 1.160 1.904 0.353 2.257 sum -12.898 -4.510 -18.972 23.380 Atomic orbital electron populations 1.20854 0.86054 1.04709 1.04330 1.22029 0.98783 0.87775 0.91252 1.22086 0.93012 1.00747 1.04026 1.20555 0.94741 0.94273 0.92121 1.20945 0.99631 0.93605 1.03675 1.20567 0.93598 0.95647 1.10833 1.18182 0.86909 0.74905 0.83211 1.90756 1.70139 1.52155 1.32046 1.48159 1.07394 1.71105 1.05768 1.21739 0.96134 0.99655 0.82728 1.22440 0.98320 0.97985 0.99340 1.20381 0.91174 0.91291 0.89540 0.93256 1.42755 1.74502 1.19276 1.02264 1.18991 1.31887 1.01652 0.82389 0.92172 1.25386 1.02774 1.01677 0.95502 1.69866 1.54303 1.35088 1.04319 0.85531 0.77958 0.80536 0.78458 1.20860 1.22774 1.17675 1.21670 0.96597 0.98852 0.95092 0.91667 1.21639 0.93692 1.02236 1.01696 1.21718 0.78060 0.98781 1.01280 1.21486 0.89249 0.94953 0.92115 1.20814 0.99551 0.91854 1.04219 1.67438 1.08602 1.30222 1.15465 0.88986 0.88223 0.90429 0.81274 0.89571 0.88203 0.92469 0.89877 0.89763 0.91841 0.92402 0.80387 0.93554 0.92241 0.91191 0.93654 0.89114 0.89502 0.88710 0.89027 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.16 71.23 0.72 -0.41 16 2 C 0.14 2.59 6.78 42.57 0.29 2.88 16 3 C -0.18 -3.12 9.43 22.33 0.21 -2.91 16 4 C -0.01 -0.19 5.80 -19.40 -0.11 -0.31 16 5 C -0.12 -2.37 9.69 71.23 0.69 -1.68 16 6 C -0.20 -5.03 3.65 -19.99 -0.07 -5.10 16 7 C 0.58 16.04 4.23 86.79 0.37 16.40 16 8 O -0.57 -19.28 16.51 -3.88 -0.06 -19.34 16 9 N -0.59 -14.95 2.97 -822.22 -2.44 -17.39 16 10 C 0.12 2.92 6.34 86.36 0.55 3.47 16 11 C -0.14 -4.25 5.66 30.67 0.17 -4.07 16 12 C 0.18 6.25 2.19 45.02 0.10 6.35 16 13 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 14 N -0.75 -32.22 4.21 -322.80 -1.36 -33.58 16 15 C -0.22 -11.73 10.41 84.03 0.87 -10.86 16 16 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 17 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 18 N -0.98 -61.78 13.97 21.65 0.30 -61.47 16 19 Si 0.95 44.44 27.74 68.60 1.90 46.34 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 22 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 23 C -0.10 -2.87 2.46 -10.69 -0.03 -2.89 16 24 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 25 C -0.13 -3.70 9.03 71.98 0.65 -3.05 16 26 C 0.12 3.07 5.72 86.38 0.49 3.56 16 27 C 0.16 3.83 6.82 42.89 0.29 4.12 16 28 C -0.11 -2.15 9.79 71.24 0.70 -1.45 16 29 N -0.51 -11.69 10.17 -171.06 -1.74 -13.42 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.65 8.07 -2.38 -0.02 0.63 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.48 8.10 -2.39 -0.02 1.46 16 36 H 0.06 1.32 7.19 -2.39 -0.02 1.31 16 37 H 0.08 1.94 6.22 -2.39 -0.01 1.92 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.36 15.43 5.36 -92.71 -0.50 14.93 16 42 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.46 7.36 -2.38 -0.02 1.44 16 46 H 0.09 2.33 7.00 -2.39 -0.02 2.31 16 47 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 48 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.07 1.47 7.07 -2.39 -0.02 1.45 16 Total: -1.00 -70.98 396.56 3.34 -67.64 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: 0.37 Total: 30.25 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 6.36 Total: 0.97 kcal Atomic # 7 Polarization: -120.63 SS G_CDS: -5.24 Total: -125.87 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.06 Total: -19.34 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.90 Total: 46.34 kcal Total: -70.98 3.34 -67.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036115021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.306 kcal (2) G-P(sol) polarization free energy of solvation -70.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds