Wall clock time and date at job start Sat Apr 11 2020 02:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34491 * 125.56883 * 2 1 4 4 C 1.46681 * 106.33399 * 179.73349 * 3 2 1 5 5 C 1.47270 * 126.94280 * 180.02562 * 4 3 2 6 6 O 1.21623 * 119.99840 * 174.14341 * 5 4 3 7 7 N 1.34775 * 119.99937 * 354.14556 * 5 4 3 8 8 C 1.47484 * 125.66025 * 184.68339 * 7 5 4 9 9 C 1.55279 * 104.77613 * 155.88277 * 8 7 5 10 10 C 1.54476 * 101.42280 * 36.67054 * 9 8 7 11 11 C 1.47179 * 125.66178 * 4.98356 * 7 5 4 12 12 C 1.52244 * 110.29031 * 206.46250 * 10 9 8 13 13 C 1.53173 * 109.64738 * 178.00514 * 12 10 9 14 14 C 1.53187 * 109.27349 * 60.18394 * 13 12 10 15 15 N 1.46941 * 108.92598 * 304.77549 * 14 13 12 16 16 C 1.36938 * 120.69855 * 234.13734 * 15 14 13 17 17 H 1.07996 * 120.00219 * 27.85691 * 16 15 14 18 18 C 1.38811 * 119.99478 * 207.86175 * 16 15 14 19 19 N 1.31614 * 120.00210 * 15.90873 * 18 16 15 20 20 Si 1.86805 * 119.99533 * 195.91252 * 18 16 15 21 21 H 1.48496 * 109.47336 * 59.99852 * 20 18 16 22 22 H 1.48501 * 109.46998 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47242 * 299.99673 * 20 18 16 24 24 C 1.47073 * 118.59736 * 54.16033 * 15 14 13 25 25 C 1.36767 * 106.11704 * 0.02562 * 4 3 2 26 26 C 1.50697 * 125.80378 * 180.02562 * 25 4 3 27 27 N 1.34663 * 108.39739 * 359.97438 * 25 4 3 28 28 H 0.96995 * 124.85606 * 179.97438 * 27 25 4 29 29 H 1.09000 * 109.47217 * 90.00591 * 1 2 3 30 30 H 1.09000 * 109.46823 * 209.99957 * 1 2 3 31 31 H 1.08992 * 109.47652 * 329.99950 * 1 2 3 32 32 H 1.08004 * 126.82962 * 359.70785 * 3 2 1 33 33 H 1.09000 * 110.35008 * 274.84136 * 8 7 5 34 34 H 1.08995 * 110.35226 * 37.12678 * 8 7 5 35 35 H 1.09006 * 111.23145 * 278.57249 * 9 8 7 36 36 H 1.09001 * 110.89829 * 154.62761 * 9 8 7 37 37 H 1.08996 * 109.91634 * 300.90393 * 11 7 5 38 38 H 1.09005 * 109.91265 * 62.17216 * 11 7 5 39 39 H 1.09004 * 109.44235 * 298.05472 * 12 10 9 40 40 H 1.08993 * 109.44086 * 57.98898 * 12 10 9 41 41 H 1.09001 * 109.50312 * 180.11966 * 13 12 10 42 42 H 1.09003 * 109.50032 * 300.19766 * 13 12 10 43 43 H 1.08993 * 109.56509 * 64.60948 * 14 13 12 44 44 H 1.08994 * 109.56134 * 184.83478 * 14 13 12 45 45 H 0.97002 * 119.99588 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.57605 * 187.75038 * 24 15 14 47 47 H 1.08998 * 109.57937 * 67.35179 * 24 15 14 48 48 H 1.09008 * 109.47229 * 89.99847 * 26 25 4 49 49 H 1.09000 * 109.47525 * 209.99448 * 26 25 4 50 50 H 1.08997 * 109.47192 * 329.99815 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6742 0.6108 0.0065 5 6 4.8977 1.4305 0.0095 6 8 5.9856 0.8987 0.1225 7 7 4.8117 2.7699 -0.1130 8 6 5.9524 3.6982 -0.2230 9 6 5.3778 4.9482 -0.9432 10 6 3.9577 5.0230 -0.3398 11 6 3.5640 3.5495 -0.1529 12 6 3.0085 5.7152 -1.3082 13 6 1.5955 5.7372 -0.7172 14 6 1.6141 6.5030 0.6094 15 7 2.6163 5.8960 1.4961 16 6 2.2754 5.4810 2.7558 17 1 1.2627 5.1707 2.9666 18 6 3.2316 5.4594 3.7618 19 7 4.3618 6.1166 3.6098 20 14 2.9142 4.4976 5.3315 21 1 2.7088 3.0645 5.0009 22 1 4.0813 4.6332 6.2396 23 1 1.7006 5.0299 6.0014 24 6 3.9933 5.7440 1.0023 25 6 3.5998 -0.7549 0.0094 26 6 4.7722 -1.7016 0.0167 27 7 2.3008 -1.1098 0.0056 28 1 1.9758 -2.0237 0.0062 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.9627 2.1234 -0.0044 33 1 6.3214 3.9643 0.7675 34 1 6.7489 3.2513 -0.8178 35 1 5.3367 4.7981 -2.0221 36 1 5.9550 5.8391 -0.6958 37 1 2.9475 3.2210 -0.9895 38 1 3.0194 3.4268 0.7834 39 1 3.3462 6.7375 -1.4789 40 1 2.9971 5.1741 -2.2542 41 1 0.9176 6.2313 -1.4131 42 1 1.2578 4.7154 -0.5437 43 1 1.8733 7.5455 0.4254 44 1 0.6307 6.4484 1.0761 45 1 5.0301 6.1011 4.3127 46 1 4.5746 5.1595 1.7155 47 1 4.4470 6.7271 0.8769 48 1 5.0505 -1.9275 1.0462 49 1 4.4981 -2.6236 -0.4961 50 1 5.6163 -1.2387 -0.4945 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040417655.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:17 Heat of formation + Delta-G solvation = 27.367849 kcal Electronic energy + Delta-G solvation = -30633.788718 eV Core-core repulsion = 26854.810889 eV Total energy + Delta-G solvation = -3778.977829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23122 -39.71617 -37.88462 -35.50838 -33.07953 -32.55784 -31.81649 -30.69013 -29.91938 -29.14120 -28.52305 -25.87523 -25.31041 -24.57474 -23.16915 -22.14254 -21.22340 -20.50472 -19.98330 -18.49778 -17.78237 -16.86504 -16.70204 -15.68179 -15.54145 -15.06052 -14.64388 -14.58052 -14.02684 -13.81271 -13.59970 -13.47501 -13.25464 -13.22023 -13.02620 -12.85961 -12.64342 -12.47300 -12.27658 -12.25066 -12.09683 -12.05428 -11.61567 -11.52721 -11.34416 -11.15898 -10.91459 -10.82604 -10.55059 -10.37967 -10.17955 -10.09639 -9.79152 -9.51736 -9.36411 -9.27470 -8.64383 -8.43677 -8.12507 -7.76746 -6.64787 -5.76663 -3.19037 1.97536 2.55419 3.15917 3.40633 3.47286 3.48968 3.65830 3.92777 4.51806 4.85085 4.91676 5.00104 5.08016 5.15728 5.28205 5.31010 5.45986 5.47209 5.50190 5.58625 5.64536 5.68455 5.72186 5.78067 5.81234 5.84070 5.98414 6.02919 6.04089 6.06694 6.17514 6.24419 6.29631 6.36358 6.40808 6.48838 6.50856 6.63111 6.75257 6.82333 6.86675 6.94171 6.97097 7.01200 7.13144 7.35268 7.54491 7.67827 7.81957 8.12901 8.47111 8.76109 9.23511 9.87071 10.43587 11.31808 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.009625 B = 0.005104 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.359799 B = 5484.725164 C = 5929.926739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.001 3.999 3 C -0.162 4.162 4 C -0.221 4.221 5 C 0.604 3.396 6 O -0.565 6.565 7 N -0.606 5.606 8 C 0.112 3.888 9 C -0.123 4.123 10 C -0.095 4.095 11 C 0.121 3.879 12 C -0.093 4.093 13 C -0.136 4.136 14 C 0.144 3.856 15 N -0.590 5.590 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.007 3.993 19 N -0.901 5.901 20 Si 0.896 3.104 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.187 3.813 25 C 0.096 3.904 26 C -0.089 4.089 27 N -0.551 5.551 28 H 0.410 0.590 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.157 0.843 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.016 0.984 44 H 0.052 0.948 45 H 0.254 0.746 46 H 0.092 0.908 47 H 0.020 0.980 48 H 0.075 0.925 49 H 0.058 0.942 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 -10.499 -11.566 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C -0.185 4.185 4 C -0.231 4.231 5 C 0.395 3.605 6 O -0.447 6.447 7 N -0.338 5.338 8 C -0.011 4.011 9 C -0.162 4.162 10 C -0.097 4.097 11 C -0.001 4.001 12 C -0.131 4.131 13 C -0.175 4.175 14 C 0.018 3.982 15 N -0.312 5.312 16 C -0.381 4.381 17 H 0.082 0.918 18 C -0.192 4.192 19 N -0.546 5.546 20 Si 0.726 3.274 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.061 3.939 25 C -0.021 4.021 26 C -0.146 4.146 27 N -0.148 5.148 28 H 0.246 0.754 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.110 0.890 47 H 0.038 0.962 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.111 -10.914 -11.342 16.268 hybrid contribution -0.358 -0.780 0.943 1.275 sum -4.469 -11.694 -10.398 16.274 Atomic orbital electron populations 1.20301 0.87869 1.03371 1.02406 1.20242 0.93426 0.85959 1.11132 1.22469 0.90849 0.98548 1.06661 1.20078 0.93148 0.91983 1.17917 1.16945 0.87593 0.80175 0.75740 1.90683 1.29239 1.71976 1.52796 1.48249 1.08743 1.04981 1.71843 1.22238 0.89097 0.89037 1.00685 1.22803 0.96863 0.97525 0.98984 1.21870 0.93540 0.94683 0.99611 1.22325 0.85930 0.90005 1.01880 1.21271 0.95371 0.99932 0.96495 1.22069 0.95772 1.01126 0.98573 1.20900 0.93565 0.93928 0.89844 1.44039 1.05431 1.69511 1.12217 1.19078 0.96384 1.37136 0.85551 0.91777 1.24989 0.97778 0.99102 0.97302 1.69981 1.08707 1.42033 1.33837 0.86465 0.77111 0.80452 0.83371 1.20960 1.21653 1.20934 1.20694 0.86946 0.96670 0.89576 1.20198 0.84778 0.94182 1.02970 1.20496 0.94702 0.96104 1.03308 1.41467 1.05284 1.08530 1.59526 0.75390 0.91261 0.92064 0.89765 0.82521 0.91119 0.91351 0.91509 0.89977 0.92408 0.89379 0.92268 0.93402 0.93146 0.92397 0.96579 0.92966 0.93588 0.89017 0.96195 0.90600 0.92279 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.41 36.01 0.37 -0.39 16 2 C 0.00 0.01 7.13 -81.86 -0.58 -0.57 16 3 C -0.16 -2.58 9.29 -37.50 -0.35 -2.92 16 4 C -0.22 -3.88 6.22 -103.35 -0.64 -4.52 16 5 C 0.60 11.99 7.83 -12.59 -0.10 11.89 16 6 O -0.57 -12.14 15.19 5.26 0.08 -12.06 16 7 N -0.61 -11.53 3.33 -171.85 -0.57 -12.10 16 8 C 0.11 1.98 6.60 -2.30 -0.02 1.97 16 9 C -0.12 -1.94 6.01 -24.75 -0.15 -2.09 16 10 C -0.09 -1.69 0.54 -154.09 -0.08 -1.77 16 11 C 0.12 2.20 3.18 -3.33 -0.01 2.19 16 12 C -0.09 -1.45 4.52 -27.03 -0.12 -1.58 16 13 C -0.14 -2.18 5.92 -26.55 -0.16 -2.34 16 14 C 0.14 2.85 6.49 -3.71 -0.02 2.82 16 15 N -0.59 -13.95 2.62 -172.68 -0.45 -14.41 16 16 C -0.25 -6.67 9.60 -15.06 -0.14 -6.82 16 17 H 0.06 1.67 7.88 -52.49 -0.41 1.26 16 18 C 0.01 0.20 4.95 -17.43 -0.09 0.11 16 19 N -0.90 -25.84 11.13 55.49 0.62 -25.22 16 20 Si 0.90 21.99 29.58 -169.99 -5.03 16.96 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.19 4.22 3.72 -4.04 -0.02 4.20 16 25 C 0.10 1.39 7.17 -81.88 -0.59 0.81 16 26 C -0.09 -1.08 9.82 36.00 0.35 -0.73 16 27 N -0.55 -6.45 5.90 -5.42 -0.03 -6.49 16 28 H 0.41 3.26 8.96 -40.82 -0.37 2.89 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.16 2.54 4.84 -52.48 -0.25 2.28 16 33 H 0.07 1.37 7.89 -51.93 -0.41 0.96 16 34 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 35 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 36 H 0.08 1.25 7.98 -51.93 -0.41 0.83 16 37 H 0.06 0.97 6.17 -51.93 -0.32 0.65 16 38 H 0.09 1.87 6.58 -51.93 -0.34 1.53 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.93 7.29 -51.93 -0.38 0.55 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.01 7.94 -51.93 -0.41 0.60 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.09 2.39 5.61 -51.93 -0.29 2.10 16 47 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 48 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.10 1.39 6.60 -51.93 -0.34 1.05 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -32.14 381.96 -10.11 -42.25 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.14 Total: 5.05 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -2.34 Total: 0.25 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.44 Total: -58.21 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.14 -10.11 -42.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040417655.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.619 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds