Wall clock time and date at job start Sat Apr 11 2020 02:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35526 * 125.68001 * 2 1 4 4 C 1.35449 * 108.87502 * 179.97438 * 3 2 1 5 5 C 1.39836 * 107.86201 * 359.74574 * 4 3 2 6 6 C 1.37651 * 125.67514 * 179.97438 * 2 1 3 7 7 C 1.46678 * 126.23439 * 0.02562 * 6 2 1 8 8 O 1.21695 * 120.00124 * 5.39295 * 7 6 2 9 9 N 1.34776 * 119.99957 * 185.38941 * 7 6 2 10 10 C 1.46505 * 120.00001 * 185.25708 * 9 7 6 11 11 H 1.08997 * 113.34096 * 28.43148 * 10 9 7 12 12 C 1.50000 * 114.12629 * 255.49586 * 10 9 7 13 13 H 1.09000 * 112.51099 * 170.15030 * 12 10 9 14 14 C 1.51209 * 125.53254 * 27.69769 * 12 10 9 15 15 C 1.56633 * 104.93753 * 197.94564 * 14 12 10 16 16 C 1.52506 * 112.48424 * 56.17431 * 15 14 12 17 17 N 1.48410 * 111.85997 * 312.72854 * 16 15 14 18 18 C 1.36942 * 123.16830 * 231.87086 * 17 16 15 19 19 H 1.08002 * 119.99627 * 147.49994 * 18 17 16 20 20 C 1.38817 * 119.99774 * 327.50576 * 18 17 16 21 21 N 1.31614 * 119.99494 * 170.53942 * 20 18 17 22 22 Si 1.86798 * 120.00178 * 350.53603 * 20 18 17 23 23 H 1.48504 * 109.46877 * 85.88324 * 22 20 18 24 24 H 1.48495 * 109.46906 * 205.88006 * 22 20 18 25 25 H 1.48503 * 109.47239 * 325.88384 * 22 20 18 26 26 C 1.45375 * 113.66271 * 51.84550 * 17 16 15 27 27 H 1.08995 * 112.09246 * 59.74557 * 26 17 16 28 28 C 1.49973 * 126.22214 * 204.16665 * 26 17 16 29 29 C 1.53004 * 114.08106 * 253.24080 * 28 26 17 30 30 C 1.52999 * 114.08422 * 25.48495 * 28 26 17 31 31 H 1.08997 * 109.47144 * 264.86352 * 1 2 3 32 32 H 1.08994 * 109.46660 * 24.86365 * 1 2 3 33 33 H 1.09000 * 109.46714 * 144.85866 * 1 2 3 34 34 H 1.08003 * 125.56411 * 359.95110 * 3 2 1 35 35 H 1.08004 * 126.07326 * 180.02562 * 4 3 2 36 36 H 1.08000 * 126.45811 * 180.29998 * 5 4 3 37 37 H 0.96998 * 120.00161 * 5.25962 * 9 7 6 38 38 H 1.08997 * 110.09846 * 317.98319 * 14 12 10 39 39 H 1.08999 * 110.10335 * 79.64000 * 14 12 10 40 40 H 1.09001 * 109.32436 * 295.14133 * 15 14 12 41 41 H 1.09000 * 108.47439 * 176.61977 * 15 14 12 42 42 H 1.08995 * 109.00076 * 192.12049 * 16 15 14 43 43 H 1.08998 * 108.93699 * 73.29775 * 16 15 14 44 44 H 0.97007 * 119.99807 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.47206 * 59.99898 * 29 28 26 46 46 H 1.08998 * 109.47139 * 180.02562 * 29 28 26 47 47 H 1.09000 * 109.46859 * 299.99838 * 29 28 26 48 48 H 1.09000 * 109.47107 * 42.58597 * 30 28 26 49 49 H 1.09005 * 109.47084 * 162.58577 * 30 28 26 50 50 H 1.08998 * 109.47364 * 282.58772 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5780 -0.6888 0.0069 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5125 0.0006 8 8 0.6261 -2.7651 -0.0988 9 7 2.7077 -3.5138 0.1107 10 6 2.2671 -4.9063 -0.0047 11 1 1.3844 -5.0294 -0.6320 12 6 2.1969 -5.6375 1.3032 13 1 1.7076 -6.6074 1.2133 14 6 1.9484 -5.0025 2.6528 15 6 2.4273 -6.0691 3.6951 16 6 3.8779 -6.4866 3.4779 17 7 4.1565 -6.7959 2.0534 18 6 4.7428 -7.9627 1.6408 19 1 4.4768 -8.3926 0.6864 20 6 5.6787 -8.5929 2.4494 21 7 6.1036 -9.8010 2.1457 22 14 6.3353 -7.7263 3.9683 23 1 5.4204 -7.9710 5.1122 24 1 7.6855 -8.2520 4.2933 25 1 6.4218 -6.2670 3.7071 26 6 3.7479 -5.7437 1.1372 27 1 4.2525 -4.8003 1.3452 28 6 3.4143 -5.9134 -0.3151 29 6 4.4810 -5.3705 -1.2682 30 6 2.9341 -7.3181 -0.6854 31 1 -0.3633 -0.0920 1.0235 32 1 -0.3632 0.9324 -0.4321 33 1 -0.3633 -0.8404 -0.5915 34 1 1.9083 2.1235 -0.0007 35 1 4.4134 1.3611 0.0011 36 1 4.4583 -1.3145 0.0134 37 1 3.6437 -3.3126 0.2664 38 1 2.5160 -4.0762 2.7411 39 1 0.8845 -4.8052 2.7838 40 1 1.7924 -6.9524 3.6250 41 1 2.3292 -5.6441 4.6941 42 1 4.0867 -7.3706 4.0804 43 1 4.5313 -5.6756 3.7994 44 1 6.7579 -10.2413 2.7105 45 1 5.4233 -5.8895 -1.0927 46 1 4.1635 -5.5315 -2.2985 47 1 4.6159 -4.3032 -1.0926 48 1 2.2419 -7.6778 0.0758 49 1 2.4284 -7.2865 -1.6506 50 1 3.7897 -7.9906 -0.7454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087272821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:22 Heat of formation + Delta-G solvation = 96.173150 kcal Electronic energy + Delta-G solvation = -30385.122229 eV Core-core repulsion = 26609.128022 eV Total energy + Delta-G solvation = -3775.994207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62525 -41.04847 -38.42926 -35.53120 -33.72046 -33.00577 -32.56783 -30.83749 -29.68336 -29.15760 -27.08755 -26.64962 -26.00131 -24.91370 -22.76448 -22.36687 -20.97274 -20.60618 -19.81633 -19.33966 -18.28272 -17.72811 -16.79015 -15.95525 -15.73909 -15.36380 -15.19624 -14.60162 -14.35274 -14.19745 -13.87387 -13.72706 -13.57627 -13.43276 -13.24607 -13.11559 -12.77398 -12.54517 -12.48523 -12.42811 -12.34274 -12.15975 -11.65422 -11.53674 -11.41320 -11.25252 -11.18734 -10.67293 -10.45662 -10.39337 -10.06526 -9.90151 -9.77413 -9.69350 -9.47555 -9.00031 -8.89986 -8.80313 -8.45148 -8.32436 -6.73716 -5.90906 -3.35424 1.39430 2.51557 2.60414 3.31246 3.34889 3.38691 3.46736 3.49027 4.53116 4.59055 4.61708 4.72895 4.76999 4.81344 5.02559 5.05980 5.19636 5.24043 5.26317 5.38586 5.44385 5.47553 5.56301 5.68012 5.75935 5.84376 5.90668 5.91954 5.99199 6.05149 6.07358 6.11579 6.26163 6.34037 6.41098 6.41725 6.46453 6.52141 6.58229 6.60607 6.62890 6.71876 6.80166 6.82948 6.86783 6.91895 7.03972 7.14783 7.59556 7.98382 8.25779 8.42895 8.93314 9.73451 10.22688 11.24556 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.017195 B = 0.003648 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.026947 B = 7674.228904 C = 7882.643395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.412 5.412 3 C 0.009 3.991 4 C -0.207 4.207 5 C -0.142 4.142 6 C -0.048 4.048 7 C 0.590 3.410 8 O -0.551 6.551 9 N -0.690 5.690 10 C 0.142 3.858 11 H 0.096 0.904 12 C -0.170 4.170 13 H 0.106 0.894 14 C -0.085 4.085 15 C -0.129 4.129 16 C 0.120 3.880 17 N -0.589 5.589 18 C -0.254 4.254 19 H 0.100 0.900 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.891 3.109 23 H -0.289 1.289 24 H -0.307 1.307 25 H -0.271 1.271 26 C 0.152 3.848 27 H 0.049 0.951 28 C -0.062 4.062 29 C -0.136 4.136 30 C -0.120 4.120 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.167 0.833 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.403 0.597 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.070 0.930 43 H 0.023 0.977 44 H 0.262 0.738 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.047 0.953 48 H 0.066 0.934 49 H 0.042 0.958 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 19.393 -4.919 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.084 5.084 3 C -0.126 4.126 4 C -0.232 4.232 5 C -0.169 4.169 6 C -0.162 4.162 7 C 0.378 3.622 8 O -0.431 6.431 9 N -0.341 5.341 10 C 0.037 3.963 11 H 0.114 0.886 12 C -0.191 4.191 13 H 0.123 0.877 14 C -0.122 4.122 15 C -0.169 4.169 16 C -0.004 4.004 17 N -0.312 5.312 18 C -0.382 4.382 19 H 0.117 0.883 20 C -0.175 4.175 21 N -0.560 5.560 22 Si 0.724 3.276 23 H -0.217 1.217 24 H -0.235 1.235 25 H -0.196 1.196 26 C 0.044 3.956 27 H 0.066 0.934 28 C -0.063 4.063 29 C -0.193 4.193 30 C -0.177 4.177 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.120 0.880 34 H 0.184 0.816 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.240 0.760 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.041 0.959 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.061 0.939 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.446 18.972 -4.957 21.765 hybrid contribution 0.983 0.627 1.245 1.706 sum -8.462 19.599 -3.712 21.668 Atomic orbital electron populations 1.22247 0.76170 1.04736 1.04202 1.43849 1.06794 1.04999 1.52805 1.21999 0.90764 0.91435 1.08411 1.20818 0.95981 0.95038 1.11315 1.21393 0.94546 0.95554 1.05362 1.20125 0.90428 0.87702 1.17928 1.16917 0.85615 0.83323 0.76321 1.90763 1.16170 1.84850 1.51333 1.45371 1.11209 1.05174 1.72318 1.21492 0.97675 0.78987 0.98172 0.88555 1.23393 1.02363 1.00167 0.93196 0.87657 1.21449 0.99301 0.97080 0.94419 1.22351 0.98824 0.98369 0.97324 1.21468 0.93250 0.98786 0.86934 1.44155 1.70957 1.15930 1.00163 1.19150 1.15800 0.97034 1.06223 0.88272 1.25441 0.96827 0.96644 0.98627 1.69735 1.33732 1.12987 1.39573 0.86893 0.77111 0.80201 0.83440 1.21713 1.23537 1.19647 1.21724 0.91827 0.91370 0.90636 0.93396 1.21861 0.94093 0.95394 0.94965 1.21692 0.99252 0.99856 0.98530 1.21732 1.02315 0.93752 0.99897 0.90664 0.90030 0.87971 0.81573 0.84055 0.83878 0.76013 0.92810 0.93404 0.92143 0.93137 0.91240 0.95887 0.92840 0.91413 0.92911 0.93397 0.91490 0.93856 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.50 59.85 0.63 1.23 16 2 N -0.41 -4.57 3.16 -120.24 -0.38 -4.95 16 3 C 0.01 0.08 11.37 -16.92 -0.19 -0.11 16 4 C -0.21 -2.05 10.81 -39.98 -0.43 -2.48 16 5 C -0.14 -1.61 10.35 -39.12 -0.40 -2.01 16 6 C -0.05 -0.62 6.89 -81.98 -0.56 -1.18 16 7 C 0.59 8.62 7.77 -12.85 -0.10 8.52 16 8 O -0.55 -9.34 14.49 5.19 0.08 -9.26 16 9 N -0.69 -9.51 4.16 -58.97 -0.25 -9.76 16 10 C 0.14 2.17 3.86 -71.82 -0.28 1.89 16 11 H 0.10 1.52 7.68 -51.93 -0.40 1.12 16 12 C -0.17 -2.88 2.95 -95.83 -0.28 -3.16 16 13 H 0.11 1.92 5.90 -51.93 -0.31 1.62 16 14 C -0.08 -1.41 6.09 -25.67 -0.16 -1.57 16 15 C -0.13 -2.31 5.97 -25.02 -0.15 -2.46 16 16 C 0.12 2.57 4.18 -3.24 -0.01 2.56 16 17 N -0.59 -13.26 2.66 -169.40 -0.45 -13.71 16 18 C -0.25 -6.68 9.80 -15.06 -0.15 -6.83 16 19 H 0.10 2.70 4.93 -52.49 -0.26 2.44 16 20 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 21 N -0.92 -27.53 13.97 55.49 0.78 -26.75 16 22 Si 0.89 22.34 24.33 -169.99 -4.14 18.21 16 23 H -0.29 -7.06 6.47 56.52 0.37 -6.69 16 24 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 25 H -0.27 -6.65 6.31 56.52 0.36 -6.29 16 26 C 0.15 2.82 2.93 -72.13 -0.21 2.61 16 27 H 0.05 0.89 6.59 -51.93 -0.34 0.54 16 28 C -0.06 -1.00 1.38 -159.15 -0.22 -1.22 16 29 C -0.14 -1.96 9.21 37.16 0.34 -1.62 16 30 C -0.12 -2.01 7.83 37.16 0.29 -1.72 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.47 8.12 -51.93 -0.42 0.04 16 33 H 0.10 1.09 6.51 -51.93 -0.34 0.75 16 34 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.14 1.39 7.49 -52.49 -0.39 1.00 16 37 H 0.40 5.07 5.17 -40.82 -0.21 4.86 16 38 H 0.05 0.89 7.91 -51.93 -0.41 0.48 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.62 4.54 -51.93 -0.24 1.39 16 43 H 0.02 0.50 6.79 -51.93 -0.35 0.15 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.60 6.32 -51.93 -0.33 0.28 16 48 H 0.07 1.19 5.94 -51.93 -0.31 0.89 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.08 1.56 6.01 -51.93 -0.31 1.25 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -31.76 371.29 -8.39 -40.15 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.64 Total: 7.49 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.98 Total: -7.00 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.30 Total: -55.17 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.21 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.76 -8.39 -40.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087272821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.320 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds