Wall clock time and date at job start Sat Apr 11 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35526 * 125.68001 * 2 1 4 4 C 1.35449 * 108.87502 * 179.97438 * 3 2 1 5 5 C 1.39836 * 107.86201 * 359.74574 * 4 3 2 6 6 C 1.37651 * 125.67514 * 179.97438 * 2 1 3 7 7 C 1.46678 * 126.23439 * 0.02562 * 6 2 1 8 8 O 1.21695 * 120.00124 * 5.39295 * 7 6 2 9 9 N 1.34776 * 119.99957 * 185.38941 * 7 6 2 10 10 C 1.46505 * 120.00001 * 185.25708 * 9 7 6 11 11 H 1.08997 * 113.34096 * 28.43148 * 10 9 7 12 12 C 1.50000 * 114.12629 * 255.49586 * 10 9 7 13 13 H 1.09000 * 112.51099 * 170.15030 * 12 10 9 14 14 C 1.51209 * 125.53254 * 27.69769 * 12 10 9 15 15 C 1.56633 * 104.93753 * 197.94564 * 14 12 10 16 16 C 1.52506 * 112.48424 * 56.17431 * 15 14 12 17 17 N 1.48410 * 111.85997 * 312.72854 * 16 15 14 18 18 C 1.36942 * 123.16830 * 231.87086 * 17 16 15 19 19 H 1.08002 * 119.99627 * 147.49994 * 18 17 16 20 20 C 1.38817 * 119.99774 * 327.50576 * 18 17 16 21 21 N 1.31614 * 119.99494 * 170.53942 * 20 18 17 22 22 Si 1.86798 * 120.00178 * 350.53603 * 20 18 17 23 23 H 1.48504 * 109.46877 * 85.88324 * 22 20 18 24 24 H 1.48495 * 109.46906 * 205.88006 * 22 20 18 25 25 H 1.48503 * 109.47239 * 325.88384 * 22 20 18 26 26 C 1.45375 * 113.66271 * 51.84550 * 17 16 15 27 27 H 1.08995 * 112.09246 * 59.74557 * 26 17 16 28 28 C 1.49973 * 126.22214 * 204.16665 * 26 17 16 29 29 C 1.53004 * 114.08106 * 253.24080 * 28 26 17 30 30 C 1.52999 * 114.08422 * 25.48495 * 28 26 17 31 31 H 1.08997 * 109.47144 * 264.86352 * 1 2 3 32 32 H 1.08994 * 109.46660 * 24.86365 * 1 2 3 33 33 H 1.09000 * 109.46714 * 144.85866 * 1 2 3 34 34 H 1.08003 * 125.56411 * 359.95110 * 3 2 1 35 35 H 1.08004 * 126.07326 * 180.02562 * 4 3 2 36 36 H 1.08000 * 126.45811 * 180.29998 * 5 4 3 37 37 H 0.96998 * 120.00161 * 5.25962 * 9 7 6 38 38 H 1.08997 * 110.09846 * 317.98319 * 14 12 10 39 39 H 1.08999 * 110.10335 * 79.64000 * 14 12 10 40 40 H 1.09001 * 109.32436 * 295.14133 * 15 14 12 41 41 H 1.09000 * 108.47439 * 176.61977 * 15 14 12 42 42 H 1.08995 * 109.00076 * 192.12049 * 16 15 14 43 43 H 1.08998 * 108.93699 * 73.29775 * 16 15 14 44 44 H 0.97007 * 119.99807 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.47206 * 59.99898 * 29 28 26 46 46 H 1.08998 * 109.47139 * 180.02562 * 29 28 26 47 47 H 1.09000 * 109.46859 * 299.99838 * 29 28 26 48 48 H 1.09000 * 109.47107 * 42.58597 * 30 28 26 49 49 H 1.09005 * 109.47084 * 162.58577 * 30 28 26 50 50 H 1.08998 * 109.47364 * 282.58772 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2555 1.1009 0.0000 4 6 3.5522 0.7093 0.0006 5 6 3.5780 -0.6888 0.0069 6 6 2.2678 -1.1182 0.0005 7 6 1.8124 -2.5125 0.0006 8 8 0.6261 -2.7651 -0.0988 9 7 2.7077 -3.5138 0.1107 10 6 2.2671 -4.9063 -0.0047 11 1 1.3844 -5.0294 -0.6320 12 6 2.1969 -5.6375 1.3032 13 1 1.7076 -6.6074 1.2133 14 6 1.9484 -5.0025 2.6528 15 6 2.4273 -6.0691 3.6951 16 6 3.8779 -6.4866 3.4779 17 7 4.1565 -6.7959 2.0534 18 6 4.7428 -7.9627 1.6408 19 1 4.4768 -8.3926 0.6864 20 6 5.6787 -8.5929 2.4494 21 7 6.1036 -9.8010 2.1457 22 14 6.3353 -7.7263 3.9683 23 1 5.4204 -7.9710 5.1122 24 1 7.6855 -8.2520 4.2933 25 1 6.4218 -6.2670 3.7071 26 6 3.7479 -5.7437 1.1372 27 1 4.2525 -4.8003 1.3452 28 6 3.4143 -5.9134 -0.3151 29 6 4.4810 -5.3705 -1.2682 30 6 2.9341 -7.3181 -0.6854 31 1 -0.3633 -0.0920 1.0235 32 1 -0.3632 0.9324 -0.4321 33 1 -0.3633 -0.8404 -0.5915 34 1 1.9083 2.1235 -0.0007 35 1 4.4134 1.3611 0.0011 36 1 4.4583 -1.3145 0.0134 37 1 3.6437 -3.3126 0.2664 38 1 2.5160 -4.0762 2.7411 39 1 0.8845 -4.8052 2.7838 40 1 1.7924 -6.9524 3.6250 41 1 2.3292 -5.6441 4.6941 42 1 4.0867 -7.3706 4.0804 43 1 4.5313 -5.6756 3.7994 44 1 6.7579 -10.2413 2.7105 45 1 5.4233 -5.8895 -1.0927 46 1 4.1635 -5.5315 -2.2985 47 1 4.6159 -4.3032 -1.0926 48 1 2.2419 -7.6778 0.0758 49 1 2.4284 -7.2865 -1.6506 50 1 3.7897 -7.9906 -0.7454 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087272821.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:21 Heat of formation + Delta-G solvation = 77.265394 kcal Electronic energy + Delta-G solvation = -30385.942131 eV Core-core repulsion = 26609.128022 eV Total energy + Delta-G solvation = -3776.814109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.77091 -42.07146 -39.58565 -37.11390 -34.87256 -34.66127 -33.51467 -32.66328 -30.96644 -30.17300 -28.45722 -27.54521 -27.34547 -26.54399 -23.93590 -23.84399 -22.45898 -21.52724 -20.97726 -20.49307 -19.59148 -18.75079 -18.63778 -17.14725 -16.98580 -16.61169 -16.46556 -15.96243 -15.57252 -15.41888 -15.35934 -15.20909 -14.77558 -14.64253 -14.39727 -14.20632 -14.11685 -14.08591 -13.92481 -13.29765 -13.22839 -13.16975 -13.11560 -12.91039 -12.85419 -12.79986 -12.69552 -12.24416 -11.97492 -11.92411 -11.62809 -11.47039 -11.32701 -11.23509 -11.04311 -10.66386 -10.31023 -10.01718 -9.65983 -9.14759 -8.59742 -8.06184 -5.45696 0.50109 1.30086 1.40436 1.48475 1.67629 1.85732 2.36244 2.40527 2.46513 3.06771 3.20916 3.42179 3.63512 3.76283 3.84255 4.00313 4.01673 4.08879 4.22179 4.26539 4.34904 4.40288 4.43651 4.50614 4.53490 4.57720 4.61258 4.68309 4.76373 4.81854 4.86835 4.93185 4.95985 5.05046 5.12462 5.13180 5.15993 5.19166 5.20445 5.29908 5.33627 5.41316 5.47468 5.51357 5.72464 5.85507 5.98010 6.03300 6.35228 6.35734 6.52724 6.95691 7.17858 7.68067 8.23396 9.12655 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.017195 B = 0.003648 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.026947 B = 7674.228904 C = 7882.643395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.420 5.420 3 C 0.024 3.976 4 C -0.222 4.222 5 C -0.141 4.141 6 C -0.087 4.087 7 C 0.591 3.409 8 O -0.581 6.581 9 N -0.684 5.684 10 C 0.162 3.838 11 H 0.095 0.905 12 C -0.161 4.161 13 H 0.091 0.909 14 C -0.077 4.077 15 C -0.123 4.123 16 C 0.116 3.884 17 N -0.602 5.602 18 C -0.229 4.229 19 H 0.083 0.917 20 C -0.038 4.038 21 N -0.966 5.966 22 Si 0.945 3.055 23 H -0.281 1.281 24 H -0.320 1.320 25 H -0.261 1.261 26 C 0.137 3.863 27 H 0.059 0.941 28 C -0.062 4.062 29 C -0.132 4.132 30 C -0.114 4.114 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.205 0.795 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.410 0.590 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.027 0.973 44 H 0.257 0.743 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.051 0.949 49 H 0.069 0.931 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.237 23.404 -4.989 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.093 5.093 3 C -0.112 4.112 4 C -0.245 4.245 5 C -0.168 4.168 6 C -0.200 4.200 7 C 0.381 3.619 8 O -0.463 6.463 9 N -0.335 5.335 10 C 0.056 3.944 11 H 0.113 0.887 12 C -0.182 4.182 13 H 0.109 0.891 14 C -0.115 4.115 15 C -0.162 4.162 16 C -0.008 4.008 17 N -0.326 5.326 18 C -0.358 4.358 19 H 0.100 0.900 20 C -0.232 4.232 21 N -0.613 5.613 22 Si 0.776 3.224 23 H -0.209 1.209 24 H -0.249 1.249 25 H -0.185 1.185 26 C 0.030 3.970 27 H 0.077 0.923 28 C -0.063 4.063 29 C -0.189 4.189 30 C -0.171 4.171 31 H 0.094 0.906 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.221 0.779 35 H 0.180 0.820 36 H 0.171 0.829 37 H 0.248 0.752 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.070 0.930 49 H 0.088 0.912 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.347 23.032 -5.022 25.744 hybrid contribution 1.174 -0.511 1.188 1.747 sum -9.173 22.520 -3.834 24.617 Atomic orbital electron populations 1.22326 0.75322 1.05659 1.04128 1.44102 1.07544 1.05003 1.52639 1.22690 0.90465 0.92455 1.05552 1.21182 0.97202 0.94652 1.11498 1.21685 0.94302 0.96667 1.04123 1.19991 0.91450 0.87287 1.21223 1.17187 0.85129 0.84147 0.75426 1.90747 1.17348 1.85390 1.52795 1.45245 1.11553 1.04354 1.72379 1.21172 0.96966 0.79553 0.96715 0.88683 1.23313 1.00413 1.00048 0.94452 0.89132 1.21390 0.99890 0.96694 0.93489 1.22259 0.96080 0.98714 0.99178 1.21504 0.95663 0.97866 0.85784 1.44277 1.70787 1.15938 1.01573 1.19229 1.14087 0.97532 1.04949 0.89978 1.26015 0.98119 0.97327 1.01714 1.69871 1.35451 1.14731 1.41283 0.86010 0.75818 0.79559 0.80998 1.20864 1.24922 1.18519 1.22045 0.92783 0.90403 0.91743 0.92320 1.21860 0.94973 0.95380 0.94088 1.21656 0.97543 1.00723 0.98964 1.21613 1.00909 0.93663 1.00924 0.90640 0.86557 0.90197 0.77871 0.81972 0.82924 0.75203 0.92205 0.92430 0.92765 0.90649 0.93500 0.95495 0.93418 0.93405 0.91339 0.91364 0.92961 0.91221 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.03 10.50 127.77 1.34 2.37 16 2 N -0.42 -8.18 3.16 -534.31 -1.69 -9.87 16 3 C 0.02 0.35 11.37 83.48 0.95 1.30 16 4 C -0.22 -3.59 10.81 22.01 0.24 -3.35 16 5 C -0.14 -2.81 10.35 22.57 0.23 -2.58 16 6 C -0.09 -2.05 6.89 40.35 0.28 -1.77 16 7 C 0.59 16.32 7.77 86.45 0.67 17.00 16 8 O -0.58 -19.08 14.49 -4.33 -0.06 -19.14 16 9 N -0.68 -17.53 4.16 -458.70 -1.91 -19.44 16 10 C 0.16 4.69 3.86 42.47 0.16 4.86 16 11 H 0.10 2.87 7.68 -2.39 -0.02 2.85 16 12 C -0.16 -5.27 2.95 -14.17 -0.04 -5.31 16 13 H 0.09 3.28 5.90 -2.39 -0.01 3.26 16 14 C -0.08 -2.40 6.09 31.28 0.19 -2.21 16 15 C -0.12 -4.18 5.97 31.70 0.19 -3.99 16 16 C 0.12 4.84 4.18 85.85 0.36 5.19 16 17 N -0.60 -27.01 2.66 -689.87 -1.83 -28.84 16 18 C -0.23 -12.31 9.80 84.03 0.82 -11.48 16 19 H 0.08 4.67 4.93 -2.91 -0.01 4.65 16 20 C -0.04 -2.19 5.43 84.86 0.46 -1.73 16 21 N -0.97 -60.31 13.97 21.65 0.30 -60.01 16 22 Si 0.94 46.94 24.33 68.60 1.67 48.61 16 23 H -0.28 -13.43 6.47 99.48 0.64 -12.78 16 24 H -0.32 -16.40 7.11 99.48 0.71 -15.69 16 25 H -0.26 -12.29 6.31 99.48 0.63 -11.66 16 26 C 0.14 4.94 2.93 42.88 0.13 5.06 16 27 H 0.06 2.04 6.59 -2.39 -0.02 2.03 16 28 C -0.06 -1.94 1.38 -55.19 -0.08 -2.02 16 29 C -0.13 -3.62 9.21 71.98 0.66 -2.95 16 30 C -0.11 -3.85 7.83 71.98 0.56 -3.29 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.12 0.92 8.12 -2.39 -0.02 0.90 16 33 H 0.08 1.63 6.51 -2.39 -0.02 1.61 16 34 H 0.20 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.15 2.57 7.49 -2.91 -0.02 2.54 16 37 H 0.41 9.34 5.17 -92.71 -0.48 8.86 16 38 H 0.06 1.81 7.91 -2.39 -0.02 1.79 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.05 2.17 4.54 -2.39 -0.01 2.16 16 43 H 0.03 1.11 6.79 -2.39 -0.02 1.09 16 44 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.07 1.57 6.32 -2.39 -0.02 1.56 16 48 H 0.05 1.90 5.94 -2.39 -0.01 1.88 16 49 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 50 H 0.05 2.08 6.01 -2.39 -0.01 2.07 16 Total: -1.00 -70.69 371.29 3.95 -66.74 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.34 Total: 26.85 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 7.13 Total: -4.90 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -5.13 Total: -118.16 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.06 Total: -19.14 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.67 Total: 48.61 kcal Total: -70.69 3.95 -66.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087272821.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.004 kcal (2) G-P(sol) polarization free energy of solvation -70.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds