Wall clock time and date at job start Sat Apr 11 2020 02:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39834 * 126.45702 * 2 1 4 4 C 1.35448 * 107.86889 * 179.83330 * 3 2 1 5 5 N 1.35537 * 108.87099 * 0.43311 * 4 3 2 6 6 H 0.96997 * 125.67830 * 179.70340 * 5 4 3 7 7 C 1.37650 * 108.64252 * 359.73321 * 5 4 3 8 8 C 1.46681 * 126.23622 * 180.02562 * 7 5 4 9 9 O 1.21693 * 120.00084 * 179.97438 * 8 7 5 10 10 N 1.34772 * 119.99534 * 359.96750 * 8 7 5 11 11 C 1.46496 * 120.00001 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.86776 * 26.76785 * 11 10 8 13 13 C 1.54151 * 113.64127 * 255.49625 * 11 10 8 14 14 H 1.09003 * 114.24947 * 104.29083 * 13 11 10 15 15 C 1.53062 * 111.68623 * 333.51276 * 13 11 10 16 16 C 1.51278 * 110.33769 * 214.83439 * 15 13 11 17 17 C 1.52946 * 109.36137 * 63.64434 * 16 15 13 18 18 N 1.45889 * 109.88554 * 303.15202 * 17 16 15 19 19 C 1.36937 * 118.47974 * 219.31796 * 18 17 16 20 20 H 1.08005 * 119.99850 * 153.36710 * 19 18 17 21 21 C 1.38817 * 120.00404 * 333.36688 * 19 18 17 22 22 N 1.31614 * 119.99526 * 344.12663 * 21 19 18 23 23 Si 1.86797 * 120.00080 * 164.12369 * 21 19 18 24 24 H 1.48507 * 109.46641 * 90.00377 * 23 21 19 25 25 H 1.48501 * 109.46998 * 209.99669 * 23 21 19 26 26 H 1.48499 * 109.47352 * 330.00493 * 23 21 19 27 27 C 1.45095 * 123.03428 * 39.34105 * 18 17 16 28 28 H 1.08992 * 112.25346 * 202.90395 * 27 18 17 29 29 C 1.53384 * 113.73952 * 73.26568 * 27 18 17 30 30 C 1.53005 * 113.68804 * 102.40788 * 29 27 18 31 31 C 1.53001 * 113.69198 * 331.26645 * 29 27 18 32 32 H 1.09003 * 109.46876 * 269.68105 * 1 2 3 33 33 H 1.08996 * 109.47175 * 29.68878 * 1 2 3 34 34 H 1.09000 * 109.46742 * 149.68734 * 1 2 3 35 35 H 1.08006 * 126.06907 * 0.02562 * 3 2 1 36 36 H 1.08002 * 125.57113 * 180.12872 * 4 3 2 37 37 H 0.97003 * 120.00234 * 0.02562 * 10 8 7 38 38 H 1.08991 * 109.48095 * 333.57495 * 15 13 11 39 39 H 1.08998 * 109.48405 * 93.61453 * 15 13 11 40 40 H 1.09000 * 108.94594 * 303.92038 * 16 15 13 41 41 H 1.09006 * 109.84376 * 183.91084 * 16 15 13 42 42 H 1.08997 * 109.40099 * 183.02499 * 17 16 15 43 43 H 1.09002 * 109.39741 * 63.27989 * 17 16 15 44 44 H 0.97004 * 119.99969 * 180.02562 * 22 21 19 45 45 H 1.08994 * 109.47147 * 176.53467 * 30 29 27 46 46 H 1.09004 * 109.46363 * 296.53024 * 30 29 27 47 47 H 1.08997 * 109.47281 * 56.52225 * 30 29 27 48 48 H 1.09003 * 109.46887 * 333.83185 * 31 29 27 49 49 H 1.08997 * 109.46993 * 93.83686 * 31 29 27 50 50 H 1.09003 * 109.47167 * 213.83816 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 0.0038 5 7 3.6284 -0.6624 -0.0036 6 1 4.4191 -1.2242 -0.0070 7 6 2.3263 -1.1089 -0.0061 8 6 1.8899 -2.5092 -0.0132 9 8 0.7027 -2.7766 -0.0144 10 7 2.8038 -3.4998 -0.0186 11 6 2.3681 -4.8984 -0.0263 12 1 1.3859 -5.0336 -0.4794 13 6 2.5218 -5.6012 1.3371 14 1 1.5859 -5.7360 1.8793 15 6 3.6335 -4.9683 2.1775 16 6 4.3412 -6.0259 2.9954 17 6 5.0310 -7.0162 2.0558 18 7 4.0526 -7.5990 1.1440 19 6 4.1580 -8.9292 0.8363 20 1 3.2799 -9.4879 0.5478 21 6 5.3934 -9.5595 0.8952 22 7 6.4965 -8.8428 0.9359 23 14 5.4901 -11.4249 0.9170 24 1 5.5758 -11.9322 -0.4761 25 1 6.6955 -11.8492 1.6733 26 1 4.2759 -11.9759 1.5706 27 6 2.9734 -6.8341 0.5477 28 1 2.1413 -7.4665 0.2383 29 6 3.4337 -5.8738 -0.5562 30 6 3.1513 -6.3832 -1.9711 31 6 4.8684 -5.3735 -0.3770 32 1 -0.3633 -0.0057 1.0277 33 1 -0.3633 0.8927 -0.5090 34 1 -0.3633 -0.8872 -0.5187 35 1 2.0136 2.1549 0.0004 36 1 4.4972 1.3253 0.0067 37 1 3.7501 -3.2866 -0.0174 38 1 4.3676 -4.5043 1.5190 39 1 3.2058 -4.2119 2.8356 40 1 3.6067 -6.5523 3.6050 41 1 5.0840 -5.5583 3.6418 42 1 5.4959 -7.8084 2.6427 43 1 5.7971 -6.4961 1.4808 44 1 7.3598 -9.2832 0.9767 45 1 3.4479 -5.6252 -2.6960 46 1 3.7185 -7.2970 -2.1482 47 1 2.0864 -6.5903 -2.0769 48 1 5.1335 -5.4015 0.6800 49 1 5.5490 -6.0126 -0.9394 50 1 4.9447 -4.3498 -0.7436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087284020.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:57:57 Heat of formation + Delta-G solvation = 66.493930 kcal Electronic energy + Delta-G solvation = -30337.383091 eV Core-core repulsion = 26560.101897 eV Total energy + Delta-G solvation = -3777.281195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.51114 -40.81749 -38.42428 -35.27110 -33.44229 -32.95578 -32.36983 -30.43232 -30.08125 -29.60671 -27.08270 -26.89125 -25.53012 -24.63539 -22.70713 -22.19064 -21.15660 -20.25325 -19.69123 -19.05520 -18.65538 -17.38164 -16.93544 -15.92893 -15.57557 -15.26374 -14.94812 -14.59920 -14.27349 -14.01178 -13.80588 -13.54376 -13.33723 -13.27996 -13.07580 -12.71855 -12.65804 -12.54070 -12.36707 -12.32423 -11.98279 -11.67682 -11.59079 -11.46034 -11.16872 -11.05861 -10.86441 -10.73087 -10.44647 -10.27680 -10.02646 -10.02430 -9.69317 -9.58029 -9.41811 -9.16697 -8.90731 -8.67330 -8.38193 -8.20508 -6.67373 -5.81624 -3.24513 1.43238 2.62062 2.97590 3.32056 3.34523 3.42264 3.44103 3.45003 4.47121 4.84944 4.85729 4.96502 5.04397 5.10166 5.22186 5.26546 5.29954 5.44424 5.59263 5.62983 5.65697 5.80716 5.81446 5.84291 5.89728 5.99745 6.04328 6.07187 6.12557 6.19393 6.25431 6.30740 6.39290 6.43041 6.51961 6.54296 6.58536 6.66256 6.68433 6.74689 6.80150 6.85473 6.94829 7.03766 7.16038 7.23947 7.37812 7.67588 7.68958 7.80364 8.32240 8.42794 9.21986 9.87039 10.30703 11.24745 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.003161 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.000476 B = 8856.006573 C = 9073.351747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.079 4.079 3 C -0.213 4.213 4 C 0.021 3.979 5 N -0.541 5.541 6 H 0.416 0.584 7 C -0.055 4.055 8 C 0.585 3.415 9 O -0.532 6.532 10 N -0.710 5.710 11 C 0.128 3.872 12 H 0.108 0.892 13 C -0.131 4.131 14 H 0.072 0.928 15 C -0.099 4.099 16 C -0.147 4.147 17 C 0.178 3.822 18 N -0.568 5.568 19 C -0.260 4.260 20 H 0.065 0.935 21 C 0.008 3.992 22 N -0.902 5.902 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.188 3.812 28 H 0.077 0.923 29 C -0.112 4.112 30 C -0.126 4.126 31 C -0.139 4.139 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.169 0.831 37 H 0.393 0.607 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.069 0.931 43 H 0.039 0.961 44 H 0.252 0.748 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.097 0.903 49 H 0.064 0.936 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 17.190 -1.440 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 C -0.238 4.238 4 C -0.115 4.115 5 N -0.137 5.137 6 H 0.253 0.747 7 C -0.168 4.168 8 C 0.372 3.628 9 O -0.410 6.410 10 N -0.360 5.360 11 C 0.023 3.977 12 H 0.126 0.874 13 C -0.152 4.152 14 H 0.091 0.909 15 C -0.137 4.137 16 C -0.185 4.185 17 C 0.054 3.946 18 N -0.286 5.286 19 C -0.390 4.390 20 H 0.083 0.917 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.729 3.271 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.077 3.923 28 H 0.095 0.905 29 C -0.116 4.116 30 C -0.183 4.183 31 C -0.195 4.195 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.159 0.841 36 H 0.187 0.813 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.083 0.917 47 H 0.066 0.934 48 H 0.115 0.885 49 H 0.083 0.917 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.217 16.761 -1.406 17.341 hybrid contribution 1.166 -0.978 -0.090 1.524 sum -3.051 15.784 -1.496 16.145 Atomic orbital electron populations 1.20328 0.89397 1.02743 1.02152 1.19946 0.95873 0.90797 1.02156 1.20781 0.91868 0.98713 1.12425 1.21977 0.99517 0.82993 1.06970 1.41987 1.07286 1.07295 1.57090 0.74704 1.20405 0.83602 0.93922 1.18834 1.17101 0.86131 0.82986 0.76572 1.90784 1.16059 1.83263 1.50848 1.45997 1.08996 1.06580 1.74449 1.22852 0.99243 0.77718 0.97885 0.87366 1.23232 0.98609 0.97983 0.95355 0.90910 1.21109 0.96914 0.97569 0.98075 1.21787 0.99539 0.98197 0.99020 1.20651 0.89809 0.94303 0.89877 1.43192 1.29695 1.06751 1.48924 1.19226 0.92628 0.84835 1.42285 0.91708 1.24965 0.95453 0.97792 1.00894 1.70046 0.96728 1.33738 1.54125 0.86353 0.77111 0.86002 0.77623 1.21493 1.21670 1.20546 1.21069 0.91703 0.89366 0.90136 0.90472 1.23019 0.94406 0.96980 0.97215 1.21614 1.00588 1.00833 0.95271 1.22065 0.95174 0.97263 1.04997 0.91654 0.92239 0.90099 0.84137 0.81337 0.77145 0.91436 0.93814 0.92860 0.92994 0.91311 0.94346 0.93758 0.94268 0.91714 0.93437 0.88470 0.91657 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.83 36.00 0.35 -0.69 16 2 C -0.08 -0.99 6.21 -104.16 -0.65 -1.64 16 3 C -0.21 -2.15 10.76 -39.98 -0.43 -2.58 16 4 C 0.02 0.18 11.89 -16.91 -0.20 -0.02 16 5 N -0.54 -5.19 5.99 -9.39 -0.06 -5.24 16 6 H 0.42 3.02 8.19 -40.82 -0.33 2.68 16 7 C -0.05 -0.71 7.06 -81.98 -0.58 -1.29 16 8 C 0.58 8.85 7.79 -12.85 -0.10 8.75 16 9 O -0.53 -9.59 14.44 5.20 0.08 -9.51 16 10 N -0.71 -9.91 4.32 -54.09 -0.23 -10.15 16 11 C 0.13 2.03 3.58 -66.88 -0.24 1.79 16 12 H 0.11 1.82 7.42 -51.93 -0.39 1.44 16 13 C -0.13 -2.24 4.33 -89.88 -0.39 -2.63 16 14 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 15 C -0.10 -1.62 4.60 -27.57 -0.13 -1.74 16 16 C -0.15 -2.66 5.96 -27.63 -0.16 -2.82 16 17 C 0.18 3.93 3.99 -4.40 -0.02 3.91 16 18 N -0.57 -12.98 2.64 -166.87 -0.44 -13.42 16 19 C -0.26 -6.71 9.46 -15.06 -0.14 -6.85 16 20 H 0.07 1.67 7.84 -52.48 -0.41 1.26 16 21 C 0.01 0.20 4.86 -17.43 -0.08 0.12 16 22 N -0.90 -24.46 11.05 55.49 0.61 -23.85 16 23 Si 0.90 21.05 29.58 -169.99 -5.03 16.02 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.19 3.68 3.58 -68.39 -0.24 3.43 16 28 H 0.08 1.54 7.95 -51.93 -0.41 1.13 16 29 C -0.11 -1.92 1.34 -153.85 -0.21 -2.12 16 30 C -0.13 -2.10 9.12 37.16 0.34 -1.76 16 31 C -0.14 -2.37 6.87 37.16 0.26 -2.11 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.10 6.49 -51.93 -0.34 0.76 16 35 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 36 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 37 H 0.39 4.78 4.77 -40.82 -0.19 4.59 16 38 H 0.07 1.04 3.74 -51.93 -0.19 0.85 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.73 6.55 -51.93 -0.34 1.39 16 43 H 0.04 0.89 5.53 -51.93 -0.29 0.61 16 44 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.05 0.73 8.02 -51.93 -0.42 0.32 16 48 H 0.10 1.75 1.86 -51.93 -0.10 1.66 16 49 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 50 H 0.02 0.32 6.35 -51.93 -0.33 -0.01 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -29.61 372.87 -9.60 -39.21 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.52 Total: 9.59 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.62 Total: -8.26 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.12 Total: -52.67 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.61 -9.60 -39.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284020.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.700 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds