Wall clock time and date at job start Sat Apr 11 2020 02:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39834 * 126.45790 * 2 1 4 4 C 1.35449 * 107.86839 * 179.97438 * 3 2 1 5 5 N 1.35540 * 108.86799 * 359.72730 * 4 3 2 6 6 H 0.97005 * 125.67690 * 180.30306 * 5 4 3 7 7 C 1.37647 * 108.64109 * 0.43956 * 5 4 3 8 8 C 1.46680 * 126.22920 * 179.83034 * 7 5 4 9 9 O 1.21689 * 120.00117 * 179.68794 * 8 7 5 10 10 N 1.34783 * 120.00073 * 359.68910 * 8 7 5 11 11 C 1.46500 * 120.00151 * 179.97438 * 10 8 7 12 12 H 1.09004 * 113.21844 * 28.30561 * 11 10 8 13 13 C 1.50005 * 114.12652 * 255.49999 * 11 10 8 14 14 H 1.09005 * 112.50357 * 170.15477 * 13 11 10 15 15 C 1.51197 * 126.16433 * 27.75110 * 13 11 10 16 16 C 1.54098 * 106.20014 * 198.59718 * 15 13 11 17 17 C 1.52495 * 112.67355 * 55.43865 * 16 15 13 18 18 N 1.48398 * 111.86802 * 313.21426 * 17 16 15 19 19 C 1.36941 * 123.16825 * 231.80755 * 18 17 16 20 20 H 1.08001 * 120.00278 * 150.34132 * 19 18 17 21 21 C 1.38811 * 119.99980 * 330.33695 * 19 18 17 22 22 N 1.31619 * 119.99665 * 347.89906 * 21 19 18 23 23 Si 1.86796 * 119.99982 * 167.89690 * 21 19 18 24 24 H 1.48501 * 109.47032 * 60.00580 * 23 21 19 25 25 H 1.48507 * 109.46700 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47044 * 300.00090 * 23 21 19 27 27 C 1.45377 * 113.66565 * 51.83658 * 18 17 16 28 28 H 1.08995 * 111.69807 * 59.52893 * 27 18 17 29 29 C 1.49963 * 126.68658 * 204.02672 * 27 18 17 30 30 C 1.53001 * 114.08599 * 25.70011 * 29 27 18 31 31 C 1.53003 * 114.08691 * 253.28192 * 29 27 18 32 32 H 1.09001 * 109.47377 * 270.04547 * 1 2 3 33 33 H 1.09003 * 109.47147 * 30.04920 * 1 2 3 34 34 H 1.08998 * 109.46654 * 150.04539 * 1 2 3 35 35 H 1.07999 * 126.06593 * 359.91851 * 3 2 1 36 36 H 1.08001 * 125.56713 * 179.97438 * 4 3 2 37 37 H 0.97003 * 119.99932 * 0.02562 * 10 8 7 38 38 H 1.08995 * 110.10497 * 317.76701 * 15 13 11 39 39 H 1.09004 * 110.10101 * 79.43108 * 15 13 11 40 40 H 1.09004 * 108.83616 * 294.61773 * 16 15 13 41 41 H 1.08992 * 108.75728 * 176.21158 * 16 15 13 42 42 H 1.08996 * 109.00094 * 192.59603 * 17 16 15 43 43 H 1.09004 * 108.99900 * 73.82872 * 17 16 15 44 44 H 0.97007 * 119.99795 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.47474 * 147.32661 * 30 29 27 46 46 H 1.08994 * 109.47784 * 267.33320 * 30 29 27 47 47 H 1.09006 * 109.46878 * 27.33470 * 30 29 27 48 48 H 1.09003 * 109.46866 * 306.07762 * 31 29 27 49 49 H 1.09004 * 109.47009 * 66.07658 * 31 29 27 50 50 H 1.09000 * 109.47358 * 186.07403 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6929 0.0006 5 7 3.6283 -0.6625 0.0070 6 1 4.4191 -1.2244 0.0130 7 6 2.3263 -1.1088 0.0007 8 6 1.8899 -2.5092 0.0010 9 8 0.7027 -2.7766 0.0006 10 7 2.8037 -3.4999 0.0016 11 6 2.3679 -4.8986 0.0025 12 1 1.3980 -5.0467 -0.4725 13 6 2.5127 -5.5851 1.3283 14 1 2.0275 -6.5610 1.3480 15 6 2.4723 -4.9210 2.6861 16 6 3.1230 -5.9130 3.6694 17 6 4.5272 -6.3277 3.2430 18 7 4.5828 -6.6948 1.8063 19 6 5.1150 -7.8727 1.3540 20 1 4.7396 -8.3217 0.4463 21 6 6.1372 -8.4896 2.0621 22 7 6.7570 -7.8392 3.0240 23 14 6.6330 -10.2428 1.6499 24 1 7.0842 -10.3103 0.2367 25 1 7.7408 -10.6669 2.5434 26 1 5.4688 -11.1444 1.8416 27 6 4.0197 -5.6859 0.9240 28 1 4.5388 -4.7322 1.0192 29 6 3.4645 -5.9075 -0.4514 30 6 2.9457 -7.3262 -0.6942 31 6 4.3615 -5.3899 -1.5777 32 1 -0.3634 0.0008 1.0277 33 1 -0.3633 0.8896 -0.5146 34 1 -0.3632 -0.8904 -0.5131 35 1 2.0136 2.1548 -0.0012 36 1 4.4972 1.3253 0.0003 37 1 3.7501 -3.2868 0.0023 38 1 3.0379 -3.9895 2.6645 39 1 1.4400 -4.7272 2.9777 40 1 2.4980 -6.8036 3.7361 41 1 3.1770 -5.4469 4.6532 42 1 4.8413 -7.1835 3.8404 43 1 5.2123 -5.4995 3.4245 44 1 7.4716 -8.2702 3.5186 45 1 2.1003 -7.2914 -1.3814 46 1 3.7402 -7.9347 -1.1261 47 1 2.6269 -7.7634 0.2521 48 1 4.5972 -4.3404 -1.4012 49 1 5.2839 -5.9702 -1.6033 50 1 3.8425 -5.4904 -2.5309 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087284021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:00 Heat of formation + Delta-G solvation = 56.952623 kcal Electronic energy + Delta-G solvation = -30288.649344 eV Core-core repulsion = 26510.954407 eV Total energy + Delta-G solvation = -3777.694937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.74268 -42.00716 -39.57770 -36.95401 -34.85255 -34.61508 -33.30025 -32.10172 -30.96936 -30.41515 -28.54257 -27.88022 -27.48240 -26.22958 -24.03119 -23.51836 -22.23340 -21.61937 -20.76286 -20.29773 -19.60678 -19.36708 -18.48281 -17.00502 -16.64759 -16.53307 -16.29653 -15.72712 -15.50355 -15.36665 -15.24233 -14.89882 -14.67053 -14.52497 -14.26488 -14.14282 -14.01457 -13.80684 -13.61638 -13.55740 -13.21769 -13.13629 -12.90006 -12.82948 -12.76754 -12.50747 -12.44928 -12.32800 -12.12369 -11.95307 -11.70392 -11.63195 -11.39684 -11.03416 -10.96183 -10.59070 -10.26575 -10.03846 -9.67148 -9.08408 -8.47071 -7.78730 -5.26959 0.49954 1.46872 1.49056 1.54164 1.86703 2.03505 2.27302 2.37103 2.53422 3.25033 3.35900 3.45447 3.71310 3.88582 3.90954 4.11101 4.21493 4.28015 4.28833 4.34409 4.41258 4.45897 4.55946 4.60067 4.70550 4.75389 4.84432 4.91090 4.92971 4.94680 5.00727 5.02930 5.07806 5.10496 5.14872 5.18371 5.22627 5.27926 5.30691 5.45963 5.50143 5.52829 5.53087 5.68696 5.75995 5.78998 5.83208 6.02148 6.43866 6.47519 6.62005 7.16863 7.17334 7.88768 8.54527 9.26488 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.019048 B = 0.003389 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.582729 B = 8259.221344 C = 8382.565474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.092 4.092 3 C -0.229 4.229 4 C 0.046 3.954 5 N -0.534 5.534 6 H 0.426 0.574 7 C -0.088 4.088 8 C 0.590 3.410 9 O -0.563 6.563 10 N -0.696 5.696 11 C 0.159 3.841 12 H 0.096 0.904 13 C -0.163 4.163 14 H 0.089 0.911 15 C -0.075 4.075 16 C -0.126 4.126 17 C 0.179 3.821 18 N -0.584 5.584 19 C -0.241 4.241 20 H 0.083 0.917 21 C -0.053 4.053 22 N -0.939 5.939 23 Si 0.956 3.044 24 H -0.275 1.275 25 H -0.301 1.301 26 H -0.281 1.281 27 C 0.140 3.860 28 H 0.040 0.960 29 C -0.061 4.061 30 C -0.114 4.114 31 C -0.128 4.128 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.162 0.838 36 H 0.211 0.789 37 H 0.402 0.598 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.050 0.950 43 H -0.008 1.008 44 H 0.245 0.755 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.049 0.951 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 15.960 -7.960 19.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.252 4.252 4 C -0.091 4.091 5 N -0.131 5.131 6 H 0.265 0.735 7 C -0.201 4.201 8 C 0.380 3.620 9 O -0.443 6.443 10 N -0.347 5.347 11 C 0.053 3.947 12 H 0.114 0.886 13 C -0.184 4.184 14 H 0.107 0.893 15 C -0.113 4.113 16 C -0.165 4.165 17 C 0.054 3.946 18 N -0.306 5.306 19 C -0.371 4.371 20 H 0.101 0.899 21 C -0.248 4.248 22 N -0.586 5.586 23 Si 0.785 3.215 24 H -0.200 1.200 25 H -0.227 1.227 26 H -0.207 1.207 27 C 0.032 3.968 28 H 0.057 0.943 29 C -0.063 4.063 30 C -0.171 4.171 31 C -0.186 4.186 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.179 0.821 36 H 0.228 0.772 37 H 0.238 0.762 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.010 0.990 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.237 15.491 -7.861 18.819 hybrid contribution 1.597 -1.372 0.530 2.172 sum -5.640 14.119 -7.331 16.879 Atomic orbital electron populations 1.20301 0.89548 1.02656 1.01965 1.20269 0.96296 0.91742 1.01836 1.21099 0.92092 0.99115 1.12933 1.22698 1.00529 0.82574 1.03271 1.42028 1.06593 1.08056 1.56384 0.73472 1.20059 0.85252 0.92630 1.22117 1.17282 0.85463 0.83706 0.75553 1.90768 1.17360 1.83865 1.52266 1.45485 1.09389 1.05018 1.74766 1.21262 0.97556 0.79712 0.96163 0.88623 1.23265 1.01271 0.99978 0.93907 0.89301 1.20909 0.98925 0.97009 0.94450 1.21953 0.97706 0.98519 0.98361 1.20544 0.91816 0.97037 0.85214 1.44029 1.69839 1.16289 1.00473 1.19612 1.10642 0.97805 1.09048 0.89949 1.25830 0.96798 1.01976 1.00160 1.70127 1.25199 1.36938 1.26375 0.85511 0.77110 0.81403 0.77468 1.20044 1.22733 1.20696 1.21934 0.91278 0.91117 0.92444 0.94302 1.21877 0.94685 0.95681 0.94030 1.21575 1.00675 0.93174 1.01705 1.21633 0.98871 1.00428 0.97635 0.91881 0.90130 0.92316 0.82067 0.77241 0.76167 0.93292 0.92960 0.93461 0.91836 0.93197 0.99020 0.94597 0.91069 0.92418 0.92801 0.92234 0.93198 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 9.83 71.24 0.70 -1.30 16 2 C -0.09 -2.18 6.21 -19.57 -0.12 -2.30 16 3 C -0.23 -3.97 10.76 22.01 0.24 -3.74 16 4 C 0.05 0.63 11.89 83.48 0.99 1.62 16 5 N -0.53 -9.11 5.99 -183.62 -1.10 -10.21 16 6 H 0.43 5.40 8.19 -92.70 -0.76 4.64 16 7 C -0.09 -2.17 7.06 40.35 0.28 -1.89 16 8 C 0.59 17.25 7.79 86.45 0.67 17.92 16 9 O -0.56 -20.02 14.47 -4.31 -0.06 -20.08 16 10 N -0.70 -18.48 4.32 -458.74 -1.98 -20.46 16 11 C 0.16 4.78 3.90 42.46 0.17 4.95 16 12 H 0.10 2.98 7.60 -2.38 -0.02 2.97 16 13 C -0.16 -5.63 2.96 -14.17 -0.04 -5.67 16 14 H 0.09 3.32 6.07 -2.38 -0.01 3.31 16 15 C -0.08 -2.62 5.94 30.38 0.18 -2.44 16 16 C -0.13 -4.86 5.90 30.80 0.18 -4.68 16 17 C 0.18 8.50 5.28 85.85 0.45 8.96 16 18 N -0.58 -27.57 2.87 -689.98 -1.98 -29.54 16 19 C -0.24 -12.42 9.10 84.03 0.76 -11.66 16 20 H 0.08 4.03 5.19 -2.91 -0.02 4.02 16 21 C -0.05 -2.87 5.11 84.86 0.43 -2.43 16 22 N -0.94 -54.57 11.20 21.65 0.24 -54.33 16 23 Si 0.96 44.04 29.57 68.60 2.03 46.06 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 C 0.14 5.26 2.89 42.87 0.12 5.39 16 28 H 0.04 1.49 6.60 -2.39 -0.02 1.48 16 29 C -0.06 -1.91 1.39 -55.19 -0.08 -1.99 16 30 C -0.11 -3.58 7.31 71.98 0.53 -3.05 16 31 C -0.13 -3.43 9.12 71.98 0.66 -2.77 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.60 6.48 -2.39 -0.02 1.58 16 35 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.21 1.07 8.06 -2.91 -0.02 1.04 16 37 H 0.40 9.26 5.31 -92.71 -0.49 8.77 16 38 H 0.05 1.69 7.97 -2.39 -0.02 1.67 16 39 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 2.71 6.31 -2.39 -0.02 2.69 16 43 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.24 14.02 8.31 -92.70 -0.77 13.25 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 1.88 7.04 -2.39 -0.02 1.86 16 47 H 0.05 1.92 5.76 -2.38 -0.01 1.91 16 48 H 0.06 1.38 6.43 -2.39 -0.02 1.36 16 49 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -67.93 378.83 3.00 -64.93 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: -0.28 Total: 28.71 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 6.13 Total: -5.08 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -4.82 Total: -114.54 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.06 Total: -20.08 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.93 3.00 -64.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.886 kcal (2) G-P(sol) polarization free energy of solvation -67.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds