Wall clock time and date at job start Sat Apr 11 2020 02:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38612 * 120.32431 * 2 1 4 4 N 1.31492 * 120.89918 * 179.74215 * 3 2 1 5 5 C 1.32740 * 121.64505 * 0.25890 * 4 3 2 6 6 C 1.48171 * 119.72234 * 180.02562 * 5 4 3 7 7 O 1.21517 * 119.99705 * 280.87316 * 6 5 4 8 8 N 1.34770 * 120.00038 * 100.87405 * 6 5 4 9 9 C 1.46962 * 120.36589 * 3.81000 * 8 6 5 10 10 C 1.51794 * 109.40257 * 291.90080 * 9 8 6 11 11 C 1.53803 * 109.05744 * 287.19460 * 10 9 8 12 12 C 1.52443 * 109.40489 * 77.78492 * 11 10 9 13 13 C 1.53957 * 110.73017 * 246.27036 * 12 11 10 14 14 C 1.52879 * 109.72905 * 44.36961 * 13 12 11 15 15 H 1.09003 * 109.49717 * 312.91230 * 14 13 12 16 16 N 1.46499 * 109.48357 * 192.86587 * 14 13 12 17 17 C 1.36943 * 119.99581 * 155.08555 * 16 14 13 18 18 H 1.07994 * 120.00370 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99554 * 180.02562 * 17 16 14 20 20 N 1.31618 * 120.00021 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47333 * 59.99858 * 21 19 17 23 23 H 1.48503 * 109.47458 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46941 * 299.99877 * 21 19 17 25 25 C 1.45342 * 120.36415 * 184.08735 * 8 6 5 26 26 C 1.39271 * 120.55671 * 0.02562 * 5 4 3 27 27 C 1.50703 * 120.46957 * 180.02562 * 26 5 4 28 28 C 1.38584 * 120.32504 * 180.25506 * 2 1 3 29 29 H 1.09006 * 109.47033 * 89.99753 * 1 2 3 30 30 H 1.08996 * 109.47347 * 209.99378 * 1 2 3 31 31 H 1.09004 * 109.47652 * 330.00134 * 1 2 3 32 32 H 1.07998 * 119.54391 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.52875 * 51.52820 * 9 8 6 34 34 H 1.09004 * 109.53127 * 171.74731 * 9 8 6 35 35 H 1.08994 * 109.61718 * 167.29223 * 10 9 8 36 36 H 1.09007 * 109.58518 * 47.07080 * 10 9 8 37 37 H 1.09000 * 109.48016 * 317.80385 * 11 10 9 38 38 H 1.08995 * 109.49308 * 197.77515 * 11 10 9 39 39 H 1.09000 * 109.22185 * 125.95150 * 12 11 10 40 40 H 1.08995 * 109.19289 * 6.57686 * 12 11 10 41 41 H 1.08997 * 109.43107 * 284.28599 * 13 12 11 42 42 H 1.09000 * 109.42480 * 164.44615 * 13 12 11 43 43 H 0.96995 * 120.00181 * 335.08500 * 16 14 13 44 44 H 0.97004 * 119.99843 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.67530 * 256.38969 * 25 8 6 46 46 H 1.08996 * 109.67372 * 16.88985 * 25 8 6 47 47 H 1.08992 * 109.46999 * 94.96732 * 27 26 5 48 48 H 1.08998 * 109.46434 * 214.97198 * 27 26 5 49 49 H 1.08998 * 109.46939 * 334.96855 * 27 26 5 50 50 H 1.07993 * 120.75935 * 359.97233 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1965 0.0000 4 7 3.5216 1.2097 0.0051 5 6 4.2294 0.0867 0.0053 6 6 5.7097 0.1513 0.0117 7 8 6.3123 0.3786 -1.0187 8 7 6.3876 -0.0422 1.1602 9 6 5.6730 -0.4000 2.3935 10 6 4.8302 0.7780 2.8478 11 6 5.7551 1.8678 3.4157 12 6 6.4123 2.6237 2.2665 13 6 7.9310 2.3720 2.2466 14 6 8.2105 0.8845 2.4619 15 1 7.6182 0.5208 3.3016 16 7 9.6342 0.6912 2.7480 17 6 10.0475 -0.4054 3.4564 18 1 9.3240 -1.1280 3.8038 19 6 11.3965 -0.5883 3.7279 20 7 12.2782 0.2926 3.3050 21 14 11.9603 -2.0845 4.6936 22 1 11.5702 -3.3190 3.9663 23 1 13.4369 -2.0469 4.8474 24 1 11.3222 -2.0775 6.0345 25 6 7.8330 0.1066 1.1942 26 6 3.5923 -1.1517 -0.0005 27 6 4.3977 -2.4255 0.0003 28 6 2.2067 -1.1962 -0.0053 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3634 0.8900 0.5138 32 1 1.6646 2.1305 0.0004 33 1 5.0222 -1.2534 2.2030 34 1 6.3931 -0.6558 3.1708 35 1 4.1332 0.4530 3.6201 36 1 4.2740 1.1779 2.0000 37 1 6.5246 1.4055 4.0340 38 1 5.1712 2.5615 4.0204 39 1 6.2269 3.6911 2.3866 40 1 5.9804 2.2883 1.3237 41 1 8.4046 2.9487 3.0411 42 1 8.3371 2.6816 1.2836 43 1 10.2841 1.3400 2.4356 44 1 13.2208 0.1650 3.4951 45 1 8.3028 -0.8767 1.2134 46 1 8.1662 0.6553 0.3133 47 1 4.5120 -2.7824 1.0238 48 1 3.8828 -3.1812 -0.5928 49 1 5.3809 -2.2339 -0.4295 50 1 1.6845 -2.1415 -0.0091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088351771.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:49 Heat of formation + Delta-G solvation = 15.923677 kcal Electronic energy + Delta-G solvation = -30271.540167 eV Core-core repulsion = 26492.066081 eV Total energy + Delta-G solvation = -3779.474086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22452 -39.55612 -37.53273 -34.94358 -34.06311 -33.84223 -33.59313 -32.19491 -29.90945 -28.46424 -27.76252 -26.82892 -26.10680 -24.26400 -23.38457 -22.56151 -21.69766 -21.39817 -19.85464 -18.72273 -17.47674 -17.21978 -17.05164 -16.45209 -15.54921 -15.28027 -14.81900 -14.69595 -14.40589 -14.17216 -13.98829 -13.76866 -13.65080 -13.41641 -13.32172 -13.16499 -12.89918 -12.85978 -12.78258 -12.64750 -12.35256 -12.24403 -11.85065 -11.49817 -11.39710 -11.25553 -10.86444 -10.80176 -10.64854 -10.40625 -10.23703 -10.18957 -10.08468 -9.85026 -9.73448 -9.57851 -9.46657 -8.99167 -8.91653 -8.23652 -6.99539 -5.79337 -3.09044 0.68724 0.99602 2.59594 3.09222 3.41617 3.45934 3.47469 3.48825 4.16489 4.33839 4.42240 4.56387 4.61682 4.68268 4.84747 4.87429 5.06156 5.09572 5.14762 5.18164 5.27783 5.34259 5.43338 5.44775 5.47629 5.53713 5.56874 5.63492 5.72073 5.78143 5.84518 5.87299 5.91781 5.95406 5.98502 6.07382 6.13620 6.23893 6.37406 6.38162 6.41351 6.52924 6.62959 6.66894 6.81603 6.87979 7.09666 7.58423 7.64702 7.69386 8.29617 8.38850 9.49802 10.06776 10.41647 11.42830 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.018851 B = 0.003366 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.964106 B = 8316.080258 C = 8767.070176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.128 4.128 3 C 0.095 3.905 4 N -0.445 5.445 5 C 0.103 3.897 6 C 0.573 3.427 7 O -0.529 6.529 8 N -0.582 5.582 9 C 0.101 3.899 10 C -0.151 4.151 11 C -0.122 4.122 12 C -0.115 4.115 13 C -0.123 4.123 14 C 0.159 3.841 15 H 0.066 0.934 16 N -0.719 5.719 17 C -0.244 4.244 18 H 0.069 0.931 19 C -0.010 4.010 20 N -0.929 5.929 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.089 3.911 26 C -0.103 4.103 27 C -0.120 4.120 28 C -0.078 4.078 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.305 -1.659 -3.555 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.130 4.130 3 C -0.064 4.064 4 N -0.153 5.153 5 C -0.037 4.037 6 C 0.358 3.642 7 O -0.405 6.405 8 N -0.314 5.314 9 C -0.022 4.022 10 C -0.189 4.189 11 C -0.160 4.160 12 C -0.153 4.153 13 C -0.162 4.162 14 C 0.048 3.952 15 H 0.083 0.917 16 N -0.359 5.359 17 C -0.375 4.375 18 H 0.087 0.913 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.036 4.036 26 C -0.106 4.106 27 C -0.177 4.177 28 C -0.104 4.104 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.176 0.824 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.402 -0.888 -3.982 24.741 hybrid contribution 0.078 -1.394 0.377 1.447 sum -24.324 -2.282 -3.605 24.695 Atomic orbital electron populations 1.20737 0.89978 1.03284 1.02722 1.21070 0.97674 0.94069 1.00185 1.22707 0.89293 0.97653 0.96760 1.67588 1.08200 1.29591 1.09968 1.20975 0.94716 0.89121 0.98843 1.17786 0.85381 0.77028 0.83981 1.90796 1.69038 1.48738 1.31916 1.47793 1.08515 1.67229 1.07906 1.21653 0.96190 0.96822 0.87499 1.22278 0.98226 0.96723 1.01665 1.21779 0.98665 0.97322 0.98195 1.21653 0.95730 0.99043 0.98904 1.22017 0.95072 0.97424 1.01657 1.20906 0.87722 0.92435 0.94107 0.91676 1.42415 1.00888 1.27698 1.64889 1.19151 0.91408 1.00171 1.26750 0.91263 1.24752 0.95959 0.98590 1.01335 1.69654 1.01330 1.36124 1.50584 0.86294 0.77572 0.82598 0.79846 1.21247 1.21696 1.21249 1.22723 0.76483 1.02119 1.02279 1.20837 0.94597 0.95759 0.99403 1.20886 0.99986 0.93619 1.03198 1.21311 0.92778 0.98456 0.97860 0.90745 0.91212 0.90961 0.82351 0.91756 0.88348 0.91605 0.90182 0.90405 0.92686 0.93060 0.91665 0.91750 0.92438 0.78066 0.93366 0.91120 0.90102 0.90024 0.90609 0.90781 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.03 36.00 0.36 -0.18 16 2 C -0.13 -1.06 5.91 -104.36 -0.62 -1.68 16 3 C 0.10 0.97 10.86 -17.56 -0.19 0.78 16 4 N -0.44 -6.13 8.69 -9.80 -0.09 -6.21 16 5 C 0.10 1.46 4.17 -83.01 -0.35 1.12 16 6 C 0.57 9.81 4.31 -12.18 -0.05 9.76 16 7 O -0.53 -11.11 16.57 5.35 0.09 -11.02 16 8 N -0.58 -9.32 1.70 -175.67 -0.30 -9.61 16 9 C 0.10 1.34 5.00 -4.40 -0.02 1.32 16 10 C -0.15 -1.87 5.43 -26.93 -0.15 -2.02 16 11 C -0.12 -1.66 5.49 -26.60 -0.15 -1.81 16 12 C -0.12 -1.77 5.40 -26.52 -0.14 -1.91 16 13 C -0.12 -2.19 5.22 -26.29 -0.14 -2.33 16 14 C 0.16 3.09 2.29 -67.76 -0.16 2.93 16 15 H 0.07 1.23 3.29 -51.93 -0.17 1.06 16 16 N -0.72 -17.55 5.13 -53.26 -0.27 -17.82 16 17 C -0.24 -6.51 9.88 -15.06 -0.15 -6.65 16 18 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.09 1.68 5.58 -4.43 -0.02 1.66 16 26 C -0.10 -1.17 5.25 -104.09 -0.55 -1.71 16 27 C -0.12 -1.19 9.11 36.01 0.33 -0.87 16 28 C -0.08 -0.69 9.55 -39.31 -0.38 -1.06 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.06 0.73 5.41 -51.93 -0.28 0.45 16 34 H 0.10 1.37 6.06 -51.93 -0.31 1.05 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 1.07 4.19 -51.92 -0.22 0.85 16 37 H 0.08 1.16 5.47 -51.93 -0.28 0.87 16 38 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.10 5.37 -51.93 -0.28 0.82 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.06 7.87 -51.93 -0.41 0.65 16 43 H 0.39 10.19 7.80 -40.82 -0.32 9.87 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.07 1.45 8.09 -51.93 -0.42 1.03 16 46 H 0.08 1.69 6.84 -51.93 -0.36 1.33 16 47 H 0.08 0.71 7.02 -51.93 -0.36 0.34 16 48 H 0.08 0.59 8.13 -51.93 -0.42 0.17 16 49 H 0.07 0.92 6.91 -51.93 -0.36 0.56 16 50 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -32.58 376.58 -9.19 -41.77 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -7.54 Total: 10.36 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.46 Total: -3.03 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.07 Total: -60.64 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.58 -9.19 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088351771.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.689 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds