Wall clock time and date at job start Sat Apr 11 2020 02:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38399 * 120.85298 * 2 1 4 4 C 1.38312 * 119.30439 * 180.02562 * 3 2 1 5 5 N 1.31950 * 121.07839 * 0.02562 * 4 3 2 6 6 C 1.31672 * 121.88550 * 359.97438 * 5 4 3 7 7 C 1.39557 * 120.56046 * 0.02562 * 6 5 4 8 8 C 1.47839 * 120.55968 * 180.02562 * 7 6 5 9 9 O 1.21558 * 120.00162 * 185.77316 * 8 7 6 10 10 N 1.34773 * 119.99843 * 5.77326 * 8 7 6 11 11 C 1.46507 * 120.00242 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.20932 * 36.92610 * 11 10 8 13 13 C 1.52524 * 110.24725 * 274.99958 * 11 10 8 14 14 C 1.46237 * 114.28048 * 151.61774 * 13 11 10 15 15 N 1.50169 * 107.53078 * 58.40717 * 14 13 11 16 16 C 1.36937 * 120.54095 * 109.61682 * 15 14 13 17 17 H 1.07992 * 120.00194 * 150.43475 * 16 15 14 18 18 C 1.38813 * 119.99555 * 330.43480 * 16 15 14 19 19 N 1.31627 * 120.00111 * 349.18157 * 18 16 15 20 20 Si 1.86800 * 120.00037 * 169.18047 * 18 16 15 21 21 H 1.48496 * 109.47108 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46930 * 120.00195 * 20 18 16 23 23 H 1.48496 * 109.47024 * 240.00071 * 20 18 16 24 24 C 1.43433 * 118.92324 * 289.58795 * 15 14 13 25 25 C 1.54904 * 116.07727 * 91.57248 * 24 15 14 26 26 C 1.52996 * 109.36228 * 78.84579 * 25 24 15 27 27 C 1.53004 * 109.35987 * 198.43254 * 25 24 15 28 28 C 1.50122 * 110.25140 * 159.01496 * 11 10 8 29 29 H 1.09006 * 109.46905 * 96.88656 * 1 2 3 30 30 H 1.09004 * 109.46825 * 216.87942 * 1 2 3 31 31 H 1.08999 * 109.47178 * 336.87984 * 1 2 3 32 32 H 1.07997 * 120.34685 * 0.04805 * 3 2 1 33 33 H 1.07998 * 119.45976 * 179.72403 * 4 3 2 34 34 H 1.07994 * 119.71834 * 180.02562 * 6 5 4 35 35 H 0.97002 * 120.00423 * 0.02562 * 10 8 7 36 36 H 1.09003 * 108.52326 * 272.85986 * 13 11 10 37 37 H 1.09004 * 108.52476 * 30.52612 * 13 11 10 38 38 H 1.08997 * 109.84899 * 177.91244 * 14 13 11 39 39 H 1.09003 * 109.84240 * 298.83439 * 14 13 11 40 40 H 0.96998 * 119.99929 * 179.97438 * 19 18 16 41 41 H 1.09008 * 108.15976 * 213.28576 * 24 15 14 42 42 H 1.09004 * 108.16604 * 330.06241 * 24 15 14 43 43 H 1.09001 * 109.47552 * 59.99518 * 26 25 24 44 44 H 1.08997 * 109.47658 * 180.02562 * 26 25 24 45 45 H 1.09009 * 109.46971 * 300.00167 * 26 25 24 46 46 H 1.09000 * 109.46737 * 59.99573 * 27 25 24 47 47 H 1.09000 * 109.47510 * 179.97438 * 27 25 24 48 48 H 1.09003 * 109.46841 * 300.00201 * 27 25 24 49 49 H 1.08998 * 109.20926 * 336.99923 * 28 11 10 50 50 H 1.09004 * 109.20889 * 96.31225 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1508 -0.0005 5 7 4.2498 0.0027 -0.0016 6 6 3.6198 -1.1536 -0.0016 7 6 2.2250 -1.2017 -0.0011 8 6 1.5177 -2.4999 -0.0006 9 8 0.3072 -2.5325 -0.1060 10 7 2.2151 -3.6472 0.1168 11 6 1.5143 -4.9337 0.1168 12 1 0.6740 -4.9048 -0.5769 13 6 1.0269 -5.2694 1.5225 14 6 -0.1717 -6.1065 1.5596 15 7 0.1418 -7.3779 0.8246 16 6 0.2720 -8.5601 1.5033 17 1 0.0235 -9.4919 1.0174 18 6 0.7233 -8.5605 2.8160 19 7 1.2261 -7.4624 3.3395 20 14 0.6170 -10.1194 3.8398 21 1 0.0166 -11.2063 3.0254 22 1 1.9794 -10.5202 4.2741 23 1 -0.2300 -9.8706 5.0338 24 6 0.3019 -7.3342 -0.6001 25 6 1.7448 -7.1084 -1.1165 26 6 2.5220 -8.4241 -1.0415 27 6 1.6948 -6.6344 -2.5704 28 6 2.4592 -6.0402 -0.2528 29 1 -0.3633 -0.1232 -1.0203 30 1 -0.3633 -0.8221 0.6168 31 1 -0.3633 0.9451 0.4035 32 1 1.6965 2.1345 0.0008 33 1 4.1558 2.0764 -0.0051 34 1 4.1872 -2.0724 -0.0020 35 1 3.1811 -3.6212 0.2013 36 1 1.8269 -5.7866 2.0522 37 1 0.8123 -4.3378 2.0463 38 1 -0.4340 -6.3317 2.5932 39 1 -0.9987 -5.5902 1.0721 40 1 1.5412 -7.4626 4.2569 41 1 -0.0630 -8.2751 -1.0121 42 1 -0.3242 -6.5306 -0.9880 43 1 2.0274 -9.1741 -1.6587 44 1 3.5379 -8.2672 -1.4041 45 1 2.5547 -8.7684 -0.0078 46 1 1.1364 -5.7001 -2.6290 47 1 2.7093 -6.4745 -2.9356 48 1 1.2029 -7.3906 -3.1824 49 1 3.2954 -5.6248 -0.8152 50 1 2.8367 -6.5081 0.6565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089351721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:11 Heat of formation + Delta-G solvation = 20.614657 kcal Electronic energy + Delta-G solvation = -30020.343246 eV Core-core repulsion = 26241.072577 eV Total energy + Delta-G solvation = -3779.270669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.80817 -39.37754 -38.01963 -34.87922 -34.37191 -33.73018 -32.24501 -31.12725 -30.30901 -28.09398 -27.34052 -26.65471 -25.49922 -24.63393 -23.40502 -22.45692 -21.56183 -20.51431 -19.85805 -18.23846 -17.36601 -16.82275 -16.58322 -16.35834 -15.44033 -15.16849 -15.00469 -14.82798 -14.16774 -13.92154 -13.81156 -13.59842 -13.40018 -13.19801 -12.91632 -12.80797 -12.63264 -12.49084 -12.33403 -12.04108 -11.84522 -11.64104 -11.37273 -11.20667 -10.87961 -10.85323 -10.72235 -10.55804 -10.21287 -10.04069 -9.96741 -9.89405 -9.72869 -9.67662 -9.46625 -9.39342 -9.28361 -9.18503 -8.64064 -8.30595 -6.59430 -5.76760 -3.24532 0.54093 1.01527 2.96173 3.36025 3.36734 3.45246 3.46388 3.74723 4.12626 4.50013 4.50383 4.54522 4.72477 4.89891 5.20596 5.24663 5.34767 5.42132 5.46213 5.51242 5.54084 5.64582 5.67288 5.69090 5.88158 6.00557 6.02150 6.08765 6.16509 6.24272 6.30077 6.33834 6.38927 6.44664 6.51427 6.59467 6.65537 6.75927 6.81270 6.93612 7.01420 7.07397 7.11235 7.25736 7.31544 7.61641 7.66664 7.76628 7.79714 8.01535 8.43824 8.48987 9.22299 9.87077 10.43402 11.29105 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003382 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.352572 B = 8277.837224 C = 8836.899256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.017 3.983 3 C -0.186 4.186 4 C 0.117 3.883 5 N -0.494 5.494 6 C 0.137 3.863 7 C -0.186 4.186 8 C 0.558 3.442 9 O -0.529 6.529 10 N -0.712 5.712 11 C 0.147 3.853 12 H 0.085 0.915 13 C -0.133 4.133 14 C 0.172 3.828 15 N -0.586 5.586 16 C -0.242 4.242 17 H 0.064 0.936 18 C 0.005 3.995 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.292 1.292 23 H -0.291 1.291 24 C 0.168 3.832 25 C -0.088 4.088 26 C -0.128 4.128 27 C -0.136 4.136 28 C -0.101 4.101 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.140 0.860 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.392 0.608 36 H 0.107 0.893 37 H 0.027 0.973 38 H 0.088 0.912 39 H 0.007 0.993 40 H 0.251 0.749 41 H 0.033 0.967 42 H 0.027 0.973 43 H 0.042 0.958 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.040 0.960 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 13.916 -7.980 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 C -0.206 4.206 4 C -0.039 4.039 5 N -0.203 5.203 6 C -0.022 4.022 7 C -0.192 4.192 8 C 0.343 3.657 9 O -0.407 6.407 10 N -0.361 5.361 11 C 0.045 3.955 12 H 0.103 0.897 13 C -0.173 4.173 14 C 0.048 3.952 15 N -0.306 5.306 16 C -0.371 4.371 17 H 0.082 0.918 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.730 3.270 21 H -0.204 1.204 22 H -0.219 1.219 23 H -0.218 1.218 24 C 0.038 3.962 25 C -0.092 4.092 26 C -0.186 4.186 27 C -0.193 4.193 28 C -0.139 4.139 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.157 0.843 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.226 0.774 36 H 0.125 0.875 37 H 0.045 0.955 38 H 0.106 0.894 39 H 0.025 0.975 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.105 13.869 -7.860 16.461 hybrid contribution -0.095 -0.658 0.671 0.944 sum 4.010 13.211 -7.189 15.566 Atomic orbital electron populations 1.21099 0.89028 1.03545 1.04222 1.20534 0.97664 0.91331 0.89602 1.22070 0.95559 0.98661 1.04292 1.22927 0.91777 0.96388 0.92762 1.67685 1.40890 0.98308 1.13435 1.22990 0.90567 0.96532 0.92105 1.21046 0.95197 0.94863 1.08049 1.17941 0.87106 0.83361 0.77242 1.90732 1.13336 1.86948 1.49690 1.46244 1.10281 1.06396 1.73228 1.20545 0.95233 0.79768 0.99987 0.89724 1.21386 1.03721 0.98541 0.93611 1.20034 0.92316 0.84617 0.98229 1.44170 1.79926 1.05411 1.01103 1.19194 1.36704 0.85804 0.95446 0.91804 1.25056 0.98458 0.96757 0.98982 1.69883 1.44287 1.26303 1.14277 0.86264 0.77151 0.83221 0.80365 1.20441 1.21863 1.21799 1.20510 0.91291 0.98120 0.86271 1.21920 0.99993 0.94352 0.92944 1.21741 0.97541 0.96313 1.02972 1.21855 1.00432 1.00384 0.96676 1.21783 0.96429 0.94924 1.00801 0.90018 0.87980 0.92004 0.84258 0.82425 0.82463 0.77356 0.87538 0.95451 0.89363 0.97517 0.93870 0.94920 0.95443 0.93925 0.94860 0.90887 0.93423 0.93751 0.93291 0.94117 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 8.83 36.01 0.32 -1.09 16 2 C 0.02 0.21 5.95 -103.91 -0.62 -0.41 16 3 C -0.19 -1.75 9.78 -39.49 -0.39 -2.14 16 4 C 0.12 1.12 11.17 -17.47 -0.20 0.93 16 5 N -0.49 -5.84 10.35 -12.91 -0.13 -5.98 16 6 C 0.14 1.62 10.70 -17.13 -0.18 1.44 16 7 C -0.19 -2.47 5.89 -104.82 -0.62 -3.08 16 8 C 0.56 8.80 7.58 -12.33 -0.09 8.70 16 9 O -0.53 -9.82 13.23 5.32 0.07 -9.75 16 10 N -0.71 -10.78 4.96 -56.39 -0.28 -11.06 16 11 C 0.15 2.66 2.10 -69.60 -0.15 2.51 16 12 H 0.08 1.68 5.29 -51.93 -0.27 1.41 16 13 C -0.13 -2.83 4.71 -30.19 -0.14 -2.97 16 14 C 0.17 4.02 5.23 -5.20 -0.03 3.99 16 15 N -0.59 -13.75 2.58 -175.08 -0.45 -14.21 16 16 C -0.24 -6.19 8.93 -15.06 -0.13 -6.32 16 17 H 0.06 1.66 7.85 -52.49 -0.41 1.24 16 18 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 19 N -0.90 -23.88 9.14 55.49 0.51 -23.38 16 20 Si 0.90 20.97 29.57 -169.99 -5.03 15.95 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 C 0.17 3.41 4.01 -4.66 -0.02 3.39 16 25 C -0.09 -1.54 0.76 -152.53 -0.12 -1.66 16 26 C -0.13 -2.26 8.29 37.16 0.31 -1.95 16 27 C -0.14 -2.03 8.20 37.16 0.30 -1.72 16 28 C -0.10 -1.78 4.15 -27.19 -0.11 -1.89 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 1.45 5.99 -51.93 -0.31 1.14 16 31 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.16 1.53 6.47 -52.49 -0.34 1.19 16 35 H 0.39 4.90 6.55 -40.82 -0.27 4.63 16 36 H 0.11 2.53 5.05 -51.93 -0.26 2.27 16 37 H 0.03 0.59 7.90 -51.93 -0.41 0.18 16 38 H 0.09 2.30 6.25 -51.93 -0.32 1.98 16 39 H 0.01 0.16 8.13 -51.93 -0.42 -0.27 16 40 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 41 H 0.03 0.67 7.85 -51.92 -0.41 0.27 16 42 H 0.03 0.55 6.66 -51.93 -0.35 0.21 16 43 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.07 1.51 7.45 -51.92 -0.39 1.12 16 46 H 0.05 0.72 7.57 -51.93 -0.39 0.33 16 47 H 0.04 0.61 8.12 -51.93 -0.42 0.18 16 48 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 49 H 0.04 0.62 7.63 -51.93 -0.40 0.22 16 50 H 0.08 1.72 6.66 -51.93 -0.35 1.37 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -28.61 378.96 -9.36 -37.97 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -7.81 Total: 6.98 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -1.95 Total: -2.24 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.36 Total: -54.62 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.61 -9.36 -37.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089351721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.589 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds