Wall clock time and date at job start Sat Apr 11 2020 02:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38399 * 120.85298 * 2 1 4 4 C 1.38312 * 119.30439 * 180.02562 * 3 2 1 5 5 N 1.31950 * 121.07839 * 0.02562 * 4 3 2 6 6 C 1.31672 * 121.88550 * 359.97438 * 5 4 3 7 7 C 1.39557 * 120.56046 * 0.02562 * 6 5 4 8 8 C 1.47839 * 120.55968 * 180.02562 * 7 6 5 9 9 O 1.21558 * 120.00162 * 185.77316 * 8 7 6 10 10 N 1.34773 * 119.99843 * 5.77326 * 8 7 6 11 11 C 1.46507 * 120.00242 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.20932 * 36.92610 * 11 10 8 13 13 C 1.52524 * 110.24725 * 274.99958 * 11 10 8 14 14 C 1.46237 * 114.28048 * 151.61774 * 13 11 10 15 15 N 1.50169 * 107.53078 * 58.40717 * 14 13 11 16 16 C 1.36937 * 120.54095 * 109.61682 * 15 14 13 17 17 H 1.07992 * 120.00194 * 150.43475 * 16 15 14 18 18 C 1.38813 * 119.99555 * 330.43480 * 16 15 14 19 19 N 1.31627 * 120.00111 * 349.18157 * 18 16 15 20 20 Si 1.86800 * 120.00037 * 169.18047 * 18 16 15 21 21 H 1.48496 * 109.47108 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.46930 * 120.00195 * 20 18 16 23 23 H 1.48496 * 109.47024 * 240.00071 * 20 18 16 24 24 C 1.43433 * 118.92324 * 289.58795 * 15 14 13 25 25 C 1.54904 * 116.07727 * 91.57248 * 24 15 14 26 26 C 1.52996 * 109.36228 * 78.84579 * 25 24 15 27 27 C 1.53004 * 109.35987 * 198.43254 * 25 24 15 28 28 C 1.50122 * 110.25140 * 159.01496 * 11 10 8 29 29 H 1.09006 * 109.46905 * 96.88656 * 1 2 3 30 30 H 1.09004 * 109.46825 * 216.87942 * 1 2 3 31 31 H 1.08999 * 109.47178 * 336.87984 * 1 2 3 32 32 H 1.07997 * 120.34685 * 0.04805 * 3 2 1 33 33 H 1.07998 * 119.45976 * 179.72403 * 4 3 2 34 34 H 1.07994 * 119.71834 * 180.02562 * 6 5 4 35 35 H 0.97002 * 120.00423 * 0.02562 * 10 8 7 36 36 H 1.09003 * 108.52326 * 272.85986 * 13 11 10 37 37 H 1.09004 * 108.52476 * 30.52612 * 13 11 10 38 38 H 1.08997 * 109.84899 * 177.91244 * 14 13 11 39 39 H 1.09003 * 109.84240 * 298.83439 * 14 13 11 40 40 H 0.96998 * 119.99929 * 179.97438 * 19 18 16 41 41 H 1.09008 * 108.15976 * 213.28576 * 24 15 14 42 42 H 1.09004 * 108.16604 * 330.06241 * 24 15 14 43 43 H 1.09001 * 109.47552 * 59.99518 * 26 25 24 44 44 H 1.08997 * 109.47658 * 180.02562 * 26 25 24 45 45 H 1.09009 * 109.46971 * 300.00167 * 26 25 24 46 46 H 1.09000 * 109.46737 * 59.99573 * 27 25 24 47 47 H 1.09000 * 109.47510 * 179.97438 * 27 25 24 48 48 H 1.09003 * 109.46841 * 300.00201 * 27 25 24 49 49 H 1.08998 * 109.20926 * 336.99923 * 28 11 10 50 50 H 1.09004 * 109.20889 * 96.31225 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1508 -0.0005 5 7 4.2498 0.0027 -0.0016 6 6 3.6198 -1.1536 -0.0016 7 6 2.2250 -1.2017 -0.0011 8 6 1.5177 -2.4999 -0.0006 9 8 0.3072 -2.5325 -0.1060 10 7 2.2151 -3.6472 0.1168 11 6 1.5143 -4.9337 0.1168 12 1 0.6740 -4.9048 -0.5769 13 6 1.0269 -5.2694 1.5225 14 6 -0.1717 -6.1065 1.5596 15 7 0.1418 -7.3779 0.8246 16 6 0.2720 -8.5601 1.5033 17 1 0.0235 -9.4919 1.0174 18 6 0.7233 -8.5605 2.8160 19 7 1.2261 -7.4624 3.3395 20 14 0.6170 -10.1194 3.8398 21 1 0.0166 -11.2063 3.0254 22 1 1.9794 -10.5202 4.2741 23 1 -0.2300 -9.8706 5.0338 24 6 0.3019 -7.3342 -0.6001 25 6 1.7448 -7.1084 -1.1165 26 6 2.5220 -8.4241 -1.0415 27 6 1.6948 -6.6344 -2.5704 28 6 2.4592 -6.0402 -0.2528 29 1 -0.3633 -0.1232 -1.0203 30 1 -0.3633 -0.8221 0.6168 31 1 -0.3633 0.9451 0.4035 32 1 1.6965 2.1345 0.0008 33 1 4.1558 2.0764 -0.0051 34 1 4.1872 -2.0724 -0.0020 35 1 3.1811 -3.6212 0.2013 36 1 1.8269 -5.7866 2.0522 37 1 0.8123 -4.3378 2.0463 38 1 -0.4340 -6.3317 2.5932 39 1 -0.9987 -5.5902 1.0721 40 1 1.5412 -7.4626 4.2569 41 1 -0.0630 -8.2751 -1.0121 42 1 -0.3242 -6.5306 -0.9880 43 1 2.0274 -9.1741 -1.6587 44 1 3.5379 -8.2672 -1.4041 45 1 2.5547 -8.7684 -0.0078 46 1 1.1364 -5.7001 -2.6290 47 1 2.7093 -6.4745 -2.9356 48 1 1.2029 -7.3906 -3.1824 49 1 3.2954 -5.6248 -0.8152 50 1 2.8367 -6.5081 0.6565 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089351721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:10 Heat of formation + Delta-G solvation = 4.595682 kcal Electronic energy + Delta-G solvation = -30021.037881 eV Core-core repulsion = 26241.072577 eV Total energy + Delta-G solvation = -3779.965304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.84194 -40.68268 -39.40030 -36.33605 -35.99920 -34.68908 -33.59921 -32.80923 -31.67634 -29.29651 -28.59650 -28.02373 -27.29190 -25.65896 -25.00115 -23.62400 -22.87986 -21.87912 -21.47036 -19.62678 -18.66450 -18.50855 -17.73261 -17.21315 -16.97422 -16.63159 -16.25039 -16.00910 -15.74847 -15.31316 -15.21565 -15.08800 -14.76149 -14.54930 -14.13801 -13.85115 -13.77581 -13.67682 -13.55896 -13.36002 -13.19706 -13.03858 -12.97039 -12.83406 -12.70150 -12.53590 -12.31560 -12.24427 -11.90140 -11.64060 -11.50964 -11.42166 -11.10624 -11.02534 -10.93643 -10.59874 -10.47986 -10.34247 -10.23167 -9.86323 -8.51542 -7.76477 -5.25866 -0.35008 0.17968 1.47017 1.51301 1.58671 1.85502 2.15069 2.55677 2.82571 3.32738 3.37241 3.60138 3.65705 3.71763 3.83612 3.99598 4.01349 4.08788 4.11014 4.41727 4.47162 4.50097 4.55874 4.57176 4.70067 4.75490 4.77673 4.81112 4.85649 4.91826 4.95103 4.97139 5.08710 5.13096 5.17341 5.23687 5.28291 5.30732 5.36445 5.42658 5.48679 5.55132 5.63010 5.66785 5.70997 5.75253 5.81949 6.13684 6.50365 6.55768 6.85327 7.21572 7.23668 7.92972 8.47926 9.26966 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.016178 B = 0.003382 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.352572 B = 8277.837224 C = 8836.899256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.002 3.998 3 C -0.175 4.175 4 C 0.122 3.878 5 N -0.512 5.512 6 C 0.137 3.863 7 C -0.207 4.207 8 C 0.556 3.444 9 O -0.563 6.563 10 N -0.705 5.705 11 C 0.166 3.834 12 H 0.070 0.930 13 C -0.117 4.117 14 C 0.178 3.822 15 N -0.596 5.596 16 C -0.246 4.246 17 H 0.059 0.941 18 C -0.036 4.036 19 N -0.917 5.917 20 Si 0.954 3.046 21 H -0.273 1.273 22 H -0.294 1.294 23 H -0.297 1.297 24 C 0.164 3.836 25 C -0.084 4.084 26 C -0.121 4.121 27 C -0.127 4.127 28 C -0.092 4.092 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.175 0.825 33 H 0.195 0.805 34 H 0.172 0.828 35 H 0.407 0.593 36 H 0.083 0.917 37 H 0.013 0.987 38 H 0.056 0.944 39 H 0.004 0.996 40 H 0.245 0.755 41 H 0.029 0.971 42 H 0.027 0.973 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.044 0.956 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.072 0.928 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 15.697 -9.698 19.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.006 4.006 3 C -0.195 4.195 4 C -0.034 4.034 5 N -0.221 5.221 6 C -0.022 4.022 7 C -0.213 4.213 8 C 0.344 3.656 9 O -0.444 6.444 10 N -0.356 5.356 11 C 0.062 3.938 12 H 0.088 0.912 13 C -0.157 4.157 14 C 0.054 3.946 15 N -0.317 5.317 16 C -0.377 4.377 17 H 0.077 0.923 18 C -0.232 4.232 19 N -0.564 5.564 20 Si 0.784 3.216 21 H -0.198 1.198 22 H -0.221 1.221 23 H -0.225 1.225 24 C 0.036 3.964 25 C -0.088 4.088 26 C -0.178 4.178 27 C -0.185 4.185 28 C -0.130 4.130 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.192 0.808 33 H 0.212 0.788 34 H 0.189 0.811 35 H 0.244 0.756 36 H 0.102 0.898 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.022 0.978 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.063 0.937 47 H 0.084 0.916 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.744 15.653 -9.605 19.243 hybrid contribution -0.641 -1.117 1.198 1.759 sum 5.103 14.536 -8.407 17.551 Atomic orbital electron populations 1.21004 0.89194 1.03703 1.03496 1.20768 0.97870 0.92002 0.90003 1.22408 0.95596 0.98958 1.02511 1.23603 0.92240 0.96976 0.90556 1.67771 1.41325 0.98862 1.14148 1.23174 0.89958 0.97469 0.91576 1.20890 0.95872 0.93772 1.10740 1.18396 0.86811 0.84260 0.76116 1.90722 1.14928 1.87538 1.51199 1.46051 1.10957 1.05364 1.73234 1.20103 0.95208 0.81433 0.97100 0.91183 1.21152 1.01903 0.96981 0.95615 1.19837 0.93171 0.85216 0.96384 1.44197 1.80522 1.04737 1.02275 1.19299 1.36220 0.86280 0.95858 0.92315 1.25608 0.98779 0.98947 0.99891 1.70040 1.44937 1.27457 1.13920 0.85405 0.76610 0.80795 0.78756 1.19821 1.22078 1.22452 1.20610 0.93470 0.97891 0.84392 1.21828 0.97563 0.94647 0.94775 1.21646 0.99083 0.96270 1.00843 1.21763 1.01951 1.00440 0.94327 1.21629 0.97107 0.94469 0.99806 0.90396 0.91233 0.89176 0.80789 0.78775 0.81088 0.75623 0.89836 0.96794 0.92587 0.97783 0.94533 0.95301 0.95479 0.93034 0.92476 0.94608 0.93688 0.91554 0.92183 0.90950 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 8.83 71.24 0.63 -2.01 16 2 C 0.00 0.04 5.95 -19.40 -0.12 -0.07 16 3 C -0.18 -2.71 9.78 22.33 0.22 -2.49 16 4 C 0.12 1.89 11.17 84.69 0.95 2.84 16 5 N -0.51 -10.77 10.35 -194.76 -2.01 -12.78 16 6 C 0.14 3.01 10.70 85.04 0.91 3.92 16 7 C -0.21 -5.33 5.89 -19.99 -0.12 -5.45 16 8 C 0.56 17.71 7.58 86.79 0.66 18.37 16 9 O -0.56 -21.63 13.23 -3.90 -0.05 -21.69 16 10 N -0.71 -21.27 4.96 -450.60 -2.24 -23.50 16 11 C 0.17 6.04 2.10 43.90 0.09 6.13 16 12 H 0.07 2.82 5.29 -2.39 -0.01 2.81 16 13 C -0.12 -5.20 4.71 28.35 0.13 -5.07 16 14 C 0.18 8.76 5.23 83.58 0.44 9.19 16 15 N -0.60 -28.94 2.58 -707.82 -1.83 -30.77 16 16 C -0.25 -12.97 8.93 84.03 0.75 -12.22 16 17 H 0.06 3.11 7.85 -2.91 -0.02 3.09 16 18 C -0.04 -1.94 5.08 84.86 0.43 -1.51 16 19 N -0.92 -50.52 9.14 21.65 0.20 -50.32 16 20 Si 0.95 44.15 29.57 68.60 2.03 46.18 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 24 C 0.16 6.75 4.01 87.60 0.35 7.10 16 25 C -0.08 -2.87 0.76 -50.90 -0.04 -2.91 16 26 C -0.12 -4.11 8.29 71.98 0.60 -3.51 16 27 C -0.13 -3.45 8.20 71.98 0.59 -2.86 16 28 C -0.09 -3.17 4.15 30.30 0.13 -3.05 16 29 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.07 2.05 5.99 -2.39 -0.01 2.03 16 31 H 0.09 1.43 8.06 -2.39 -0.02 1.41 16 32 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 34 H 0.17 3.04 6.47 -2.91 -0.02 3.02 16 35 H 0.41 9.77 6.55 -92.71 -0.61 9.16 16 36 H 0.08 4.17 5.05 -2.39 -0.01 4.16 16 37 H 0.01 0.62 7.90 -2.38 -0.02 0.60 16 38 H 0.06 3.10 6.25 -2.39 -0.01 3.08 16 39 H 0.00 0.20 8.13 -2.39 -0.02 0.18 16 40 H 0.25 13.35 8.31 -92.71 -0.77 12.58 16 41 H 0.03 1.19 7.85 -2.38 -0.02 1.17 16 42 H 0.03 1.10 6.66 -2.39 -0.02 1.08 16 43 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 44 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.03 1.47 7.45 -2.38 -0.02 1.45 16 46 H 0.04 1.26 7.57 -2.39 -0.02 1.24 16 47 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.07 2.03 7.63 -2.39 -0.02 2.01 16 50 H 0.05 2.12 6.66 -2.38 -0.02 2.11 16 Total: -1.00 -65.17 378.96 3.03 -62.14 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.34 Total: 24.35 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 6.60 Total: 6.40 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -5.88 Total: -117.38 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.05 Total: -21.69 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -65.17 3.03 -62.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089351721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.731 kcal (2) G-P(sol) polarization free energy of solvation -65.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds