Wall clock time and date at job start Sat Apr 11 2020 02:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38356 * 120.35577 * 2 1 4 4 N 1.31923 * 121.08084 * 179.97438 * 3 2 1 5 5 C 1.31689 * 121.88449 * 0.02562 * 4 3 2 6 6 C 1.39523 * 120.56618 * 359.97438 * 5 4 3 7 7 C 1.47836 * 120.56167 * 180.02562 * 6 5 4 8 8 O 1.21546 * 120.00323 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99715 * 359.97438 * 7 6 5 10 10 C 1.46507 * 119.99694 * 180.02562 * 9 7 6 11 11 H 1.08997 * 108.31702 * 322.61221 * 10 9 7 12 12 C 1.47093 * 108.51530 * 80.23551 * 10 9 7 13 13 C 1.54862 * 110.32274 * 184.05466 * 12 10 9 14 14 N 1.44570 * 109.59815 * 288.73484 * 13 12 10 15 15 C 1.36936 * 118.64390 * 270.72047 * 14 13 12 16 16 H 1.07998 * 119.99920 * 30.32431 * 15 14 13 17 17 C 1.38816 * 120.00325 * 210.32216 * 15 14 13 18 18 N 1.31620 * 119.99686 * 10.84383 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 190.84243 * 17 15 14 20 20 H 1.48499 * 109.47124 * 90.00326 * 19 17 15 21 21 H 1.48504 * 109.46968 * 209.99903 * 19 17 15 22 22 H 1.48498 * 109.47336 * 329.99783 * 19 17 15 23 23 C 1.47602 * 122.71618 * 90.70769 * 14 13 12 24 24 C 1.53926 * 112.15801 * 317.89468 * 23 14 13 25 25 C 1.53003 * 109.36676 * 199.22986 * 24 23 14 26 26 C 1.52997 * 109.37644 * 79.60286 * 24 23 14 27 27 C 1.50881 * 110.07935 * 319.41471 * 24 23 14 28 28 C 1.38363 * 120.34563 * 180.26222 * 2 1 3 29 29 H 1.09002 * 109.47037 * 89.99357 * 1 2 3 30 30 H 1.08995 * 109.47348 * 209.99552 * 1 2 3 31 31 H 1.09004 * 109.46858 * 330.00216 * 1 2 3 32 32 H 1.08005 * 119.45321 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.72253 * 179.97438 * 5 4 3 34 34 H 0.96993 * 120.00354 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.32679 * 304.31839 * 12 10 9 36 36 H 1.08998 * 109.32470 * 63.96741 * 12 10 9 37 37 H 1.09005 * 109.44362 * 48.77594 * 13 12 10 38 38 H 1.08995 * 109.44722 * 168.69130 * 13 12 10 39 39 H 0.97001 * 119.99513 * 180.02562 * 18 17 15 40 40 H 1.09003 * 108.95203 * 78.57177 * 23 14 13 41 41 H 1.09006 * 108.94899 * 197.28870 * 23 14 13 42 42 H 1.08996 * 109.46856 * 180.61858 * 25 24 23 43 43 H 1.08998 * 109.47283 * 300.62132 * 25 24 23 44 44 H 1.08997 * 109.46872 * 60.61970 * 25 24 23 45 45 H 1.08990 * 109.47533 * 300.01763 * 26 24 23 46 46 H 1.09005 * 109.47213 * 60.02364 * 26 24 23 47 47 H 1.09000 * 109.46834 * 180.02562 * 26 24 23 48 48 H 1.08995 * 109.49034 * 331.92454 * 27 24 23 49 49 H 1.09003 * 109.48660 * 211.85990 * 27 24 23 50 50 H 1.07995 * 120.85751 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2062 1.1939 0.0000 4 7 3.5253 1.2106 0.0005 5 6 4.2350 0.1013 0.0005 6 6 3.6054 -1.1438 0.0006 7 6 4.4022 -2.3891 0.0011 8 8 3.8432 -3.4683 0.0007 9 7 5.7486 -2.3275 0.0012 10 6 6.5382 -3.5616 0.0012 11 1 6.0303 -4.2932 0.6295 12 6 6.5907 -4.0826 -1.3734 13 6 7.3307 -5.4426 -1.4052 14 7 8.7419 -5.2323 -1.1723 15 6 9.5570 -4.9982 -2.2474 16 1 9.1666 -4.5002 -3.1227 17 6 10.8850 -5.4008 -2.2125 18 7 11.3082 -6.1899 -1.2478 19 14 12.0714 -4.8226 -3.5345 20 1 12.7051 -3.5490 -3.1083 21 1 13.1210 -5.8524 -3.7423 22 1 11.3314 -4.6069 -4.8037 23 6 9.3405 -5.2593 0.1767 24 6 8.4700 -4.5260 1.2129 25 6 9.3236 -4.1702 2.4318 26 6 7.3226 -5.4391 1.6493 27 6 7.9037 -3.2628 0.6126 28 6 2.2060 -1.1941 -0.0055 29 1 -0.3633 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.6630 2.1274 -0.0004 33 1 5.3136 0.1557 0.0005 34 1 6.1947 -1.4663 0.0011 35 1 5.5757 -4.2152 -1.7479 36 1 7.1196 -3.3720 -2.0085 37 1 6.9276 -6.0933 -0.6291 38 1 7.1893 -5.9099 -2.3797 39 1 12.2363 -6.4709 -1.2232 40 1 9.4635 -6.2965 0.4887 41 1 10.3203 -4.7830 0.1388 42 1 8.7062 -3.6605 3.1714 43 1 9.7337 -5.0816 2.8668 44 1 10.1391 -3.5150 2.1255 45 1 6.7156 -5.6995 0.7823 46 1 7.7299 -6.3473 2.0937 47 1 6.7049 -4.9210 2.3828 48 1 8.5764 -2.8949 -0.1620 49 1 7.7964 -2.5069 1.3906 50 1 1.6858 -2.1404 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089351865.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:59:14 Heat of formation + Delta-G solvation = 26.414826 kcal Electronic energy + Delta-G solvation = -29442.993616 eV Core-core repulsion = 25663.974461 eV Total energy + Delta-G solvation = -3779.019155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.90735 -39.81459 -38.29552 -34.94964 -34.24135 -33.95126 -32.71416 -31.72723 -29.96265 -27.70039 -27.42423 -26.86427 -25.45921 -24.90944 -23.86193 -23.00721 -21.87421 -20.41811 -19.66053 -18.30439 -17.52712 -17.17906 -16.67752 -16.49867 -15.80251 -15.21663 -15.08039 -14.63113 -14.32148 -14.19306 -13.86779 -13.65584 -13.44116 -13.36016 -13.07359 -12.94473 -12.90760 -12.66737 -12.59023 -12.31633 -12.21031 -11.77308 -11.48909 -11.42695 -11.07862 -10.81061 -10.75009 -10.44738 -10.41960 -10.29793 -10.08954 -10.04453 -9.95496 -9.77544 -9.52380 -9.45956 -9.30466 -9.27123 -8.76650 -8.39659 -6.58245 -5.76211 -3.24816 0.40987 0.89839 2.81088 3.19410 3.36794 3.44297 3.45158 3.63501 4.01184 4.38289 4.49937 4.52134 4.60506 4.64734 4.86118 5.09848 5.19436 5.22702 5.30548 5.33544 5.39321 5.52374 5.57791 5.61105 5.69436 5.76262 5.85590 5.87508 5.94233 6.08154 6.21634 6.24915 6.26343 6.27266 6.33261 6.36224 6.42280 6.63172 6.65623 6.76634 6.79039 6.88481 6.91054 6.99749 7.17715 7.46390 7.54597 7.61048 7.76242 7.84186 8.25738 8.51511 9.27340 9.92415 10.39385 11.30371 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.017581 B = 0.002914 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.260094 B = 9606.899134 C =10123.143233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.146 4.146 3 C 0.115 3.885 4 N -0.484 5.484 5 C 0.126 3.874 6 C -0.176 4.176 7 C 0.558 3.442 8 O -0.536 6.536 9 N -0.718 5.718 10 C 0.143 3.857 11 H 0.095 0.905 12 C -0.156 4.156 13 C 0.154 3.846 14 N -0.588 5.588 15 C -0.258 4.258 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.904 5.904 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.192 3.808 24 C -0.089 4.089 25 C -0.130 4.130 26 C -0.155 4.155 27 C -0.101 4.101 28 C -0.021 4.021 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.393 0.607 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.253 0.747 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.049 0.951 47 H 0.040 0.960 48 H 0.079 0.921 49 H 0.052 0.948 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.583 12.126 6.154 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.042 4.042 4 N -0.191 5.191 5 C -0.033 4.033 6 C -0.181 4.181 7 C 0.343 3.657 8 O -0.414 6.414 9 N -0.368 5.368 10 C 0.042 3.958 11 H 0.113 0.887 12 C -0.197 4.197 13 C 0.026 3.974 14 N -0.309 5.309 15 C -0.388 4.388 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.067 3.933 24 C -0.091 4.091 25 C -0.188 4.188 26 C -0.211 4.211 27 C -0.139 4.139 28 C -0.048 4.048 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.228 0.772 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.098 0.902 49 H 0.070 0.930 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.337 12.033 6.197 21.215 hybrid contribution 0.576 0.037 -0.729 0.930 sum -15.761 12.070 5.468 20.591 Atomic orbital electron populations 1.20735 0.89642 1.03406 1.02907 1.20951 0.98009 0.93785 1.02094 1.22886 0.89952 0.97651 0.93697 1.67687 1.08048 1.31005 1.12377 1.22989 1.00335 0.86864 0.93071 1.21167 0.95250 0.95175 1.06501 1.17989 0.82525 0.88143 0.77022 1.90769 1.71121 1.29500 1.50025 1.46481 1.05574 1.10882 1.73901 1.20445 0.91667 0.84953 0.98761 0.88700 1.21883 1.00236 1.01897 0.95694 1.20793 0.85466 0.92117 0.99048 1.43605 1.02012 1.82639 1.02620 1.19179 0.92012 1.31555 0.96053 0.91975 1.25135 0.98810 0.97332 0.97843 1.70027 1.15578 1.35416 1.33752 0.86325 0.81031 0.77864 0.81717 1.21520 1.21773 1.20495 1.21081 0.94079 0.96840 0.81285 1.20927 0.96374 0.95129 0.96682 1.21789 0.99288 1.00993 0.96760 1.22388 0.98444 0.99196 1.01115 1.21295 0.95185 0.97723 0.99728 1.21659 0.92563 0.99000 0.91547 0.90636 0.90988 0.90962 0.82402 0.82389 0.77247 0.92800 0.92093 0.93767 0.93420 0.93700 0.95463 0.90825 0.93853 0.92843 0.92850 0.90689 0.93197 0.94065 0.90199 0.92970 0.83525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.03 36.00 0.36 -0.24 16 2 C -0.15 -1.25 5.89 -104.53 -0.62 -1.87 16 3 C 0.12 1.02 10.85 -17.47 -0.19 0.83 16 4 N -0.48 -5.31 10.35 -12.91 -0.13 -5.45 16 5 C 0.13 1.36 10.71 -17.13 -0.18 1.18 16 6 C -0.18 -2.11 5.89 -104.82 -0.62 -2.73 16 7 C 0.56 8.13 7.52 -12.33 -0.09 8.04 16 8 O -0.54 -9.56 15.58 5.32 0.08 -9.48 16 9 N -0.72 -9.84 4.90 -57.76 -0.28 -10.13 16 10 C 0.14 2.33 1.76 -70.98 -0.12 2.21 16 11 H 0.10 1.66 4.11 -51.93 -0.21 1.45 16 12 C -0.16 -2.84 5.17 -28.58 -0.15 -2.99 16 13 C 0.15 3.21 5.58 -4.09 -0.02 3.19 16 14 N -0.59 -13.92 2.26 -172.11 -0.39 -14.31 16 15 C -0.26 -6.81 9.41 -15.06 -0.14 -6.95 16 16 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 17 C 0.01 0.21 4.97 -17.43 -0.09 0.12 16 18 N -0.90 -25.48 10.99 55.49 0.61 -24.87 16 19 Si 0.90 21.38 29.57 -169.99 -5.03 16.35 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 23 C 0.19 4.34 3.53 -2.96 -0.01 4.33 16 24 C -0.09 -1.57 0.75 -155.09 -0.12 -1.68 16 25 C -0.13 -2.04 8.14 37.16 0.30 -1.74 16 26 C -0.15 -2.58 6.76 37.16 0.25 -2.33 16 27 C -0.10 -1.66 4.36 -28.02 -0.12 -1.78 16 28 C -0.02 -0.23 9.40 -38.86 -0.37 -0.59 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 33 H 0.16 1.38 6.42 -52.49 -0.34 1.04 16 34 H 0.39 4.37 6.63 -40.82 -0.27 4.10 16 35 H 0.05 0.99 7.45 -51.93 -0.39 0.61 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.89 5.22 -51.93 -0.27 0.62 16 38 H 0.05 1.03 7.99 -51.93 -0.41 0.61 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.03 0.68 7.83 -51.93 -0.41 0.28 16 41 H 0.07 1.87 6.31 -51.93 -0.33 1.54 16 42 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 45 H 0.07 1.33 3.15 -51.93 -0.16 1.16 16 46 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 47 H 0.04 0.62 7.91 -51.93 -0.41 0.21 16 48 H 0.08 1.49 7.48 -51.93 -0.39 1.10 16 49 H 0.05 0.74 7.64 -51.93 -0.40 0.35 16 50 H 0.15 1.54 7.74 -52.49 -0.41 1.13 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -30.84 380.73 -9.06 -39.90 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.74 Total: 5.25 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.92 Total: -3.01 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.20 Total: -54.75 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.84 -9.06 -39.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089351865.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.317 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds