Wall clock time and date at job start Sat Apr 11 2020 02:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38394 * 120.85873 * 2 1 4 4 C 1.38315 * 119.30861 * 179.97438 * 3 2 1 5 5 N 1.31952 * 121.07971 * 359.97438 * 4 3 2 6 6 C 1.31671 * 121.88183 * 359.77556 * 5 4 3 7 7 C 1.39565 * 120.56149 * 0.49108 * 6 5 4 8 8 C 1.47837 * 120.55962 * 179.77618 * 7 6 5 9 9 O 1.21553 * 119.99978 * 126.39523 * 8 7 6 10 10 N 1.34773 * 119.99934 * 306.67164 * 8 7 6 11 11 C 1.46930 * 120.63119 * 353.44703 * 10 8 7 12 12 C 1.52766 * 109.00630 * 233.58573 * 11 10 8 13 13 C 1.53036 * 109.38562 * 305.58414 * 12 11 10 14 14 C 1.52989 * 109.46216 * 181.26279 * 13 12 11 15 15 C 1.53005 * 109.47228 * 64.93407 * 14 13 12 16 16 N 1.46500 * 109.47285 * 180.02562 * 15 14 13 17 17 C 1.46499 * 120.00041 * 270.00123 * 16 15 14 18 18 C 1.36937 * 120.00049 * 89.99453 * 16 15 14 19 19 H 1.08008 * 119.99773 * 33.91015 * 18 16 15 20 20 C 1.38806 * 120.00346 * 213.90460 * 18 16 15 21 21 N 1.31615 * 120.00063 * 5.50183 * 20 18 16 22 22 Si 1.86804 * 120.00432 * 185.49578 * 20 18 16 23 23 H 1.48508 * 109.46674 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47205 * 120.00026 * 22 20 18 25 25 H 1.48500 * 109.47456 * 240.00615 * 22 20 18 26 26 C 1.53044 * 109.53436 * 61.24264 * 13 12 11 27 27 C 1.46927 * 120.63447 * 173.72949 * 10 8 7 28 28 H 1.09002 * 109.46712 * 274.88168 * 1 2 3 29 29 H 1.08995 * 109.47118 * 34.87891 * 1 2 3 30 30 H 1.08997 * 109.47216 * 154.88336 * 1 2 3 31 31 H 1.08002 * 120.34644 * 359.96004 * 3 2 1 32 32 H 1.07994 * 119.45733 * 180.02562 * 4 3 2 33 33 H 1.08002 * 119.72268 * 180.26629 * 6 5 4 34 34 H 1.09004 * 109.58166 * 353.41762 * 11 10 8 35 35 H 1.08989 * 109.58890 * 113.84225 * 11 10 8 36 36 H 1.09000 * 109.56207 * 185.54983 * 12 11 10 37 37 H 1.08994 * 109.36091 * 65.49897 * 12 11 10 38 38 H 1.09005 * 109.46025 * 301.22768 * 13 12 11 39 39 H 1.09005 * 109.47548 * 184.93068 * 14 13 12 40 40 H 1.09002 * 109.47747 * 304.93144 * 14 13 12 41 41 H 1.09001 * 109.47020 * 299.99650 * 15 14 13 42 42 H 1.08999 * 109.47019 * 60.00214 * 15 14 13 43 43 H 1.09000 * 109.47157 * 85.06646 * 17 16 15 44 44 H 1.09001 * 109.47152 * 205.06349 * 17 16 15 45 45 H 1.09000 * 109.47003 * 325.06525 * 17 16 15 46 46 H 0.97000 * 120.00467 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.49507 * 178.68568 * 26 13 12 48 48 H 1.08988 * 109.52818 * 58.60622 * 26 13 12 49 49 H 1.08996 * 109.58500 * 246.15692 * 27 10 8 50 50 H 1.09005 * 109.58078 * 6.43391 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5995 1.1506 0.0005 5 7 4.2498 0.0025 0.0016 6 6 3.6197 -1.1537 0.0065 7 6 2.2249 -1.2018 0.0005 8 6 1.5176 -2.4999 0.0011 9 8 0.6746 -2.7324 0.8454 10 7 1.8113 -3.4278 -0.9312 11 6 2.7253 -3.1138 -2.0380 12 6 2.0358 -3.4425 -3.3610 13 6 1.5545 -4.8950 -3.3358 14 6 0.8917 -5.2356 -4.6719 15 6 1.9348 -5.1726 -5.7895 16 7 1.3000 -5.4981 -7.0690 17 6 1.2494 -6.8881 -7.5289 18 6 0.7538 -4.5032 -7.8351 19 1 1.2054 -3.5221 -7.8482 20 6 -0.3801 -4.7554 -8.5949 21 7 -0.9933 -5.9158 -8.4968 22 14 -1.0360 -3.4478 -9.7567 23 1 -0.1725 -2.2419 -9.6827 24 1 -1.0335 -3.9734 -11.1455 25 1 -2.4229 -3.0888 -9.3657 26 6 0.5422 -5.0790 -2.2028 27 6 1.2190 -4.7707 -0.8636 28 1 -0.3633 0.0875 1.0240 29 1 -0.3633 0.8430 -0.5876 30 1 -0.3633 -0.9305 -0.4362 31 1 1.6966 2.1345 -0.0006 32 1 4.1558 2.0762 0.0010 33 1 4.1871 -2.0727 0.0115 34 1 2.9786 -2.0539 -2.0130 35 1 3.6322 -3.7107 -1.9435 36 1 2.7390 -3.3065 -4.1826 37 1 1.1823 -2.7787 -3.4984 38 1 2.4054 -5.5567 -3.1735 39 1 0.4715 -6.2402 -4.6235 40 1 0.0965 -4.5186 -4.8763 41 1 2.3550 -4.1680 -5.8380 42 1 2.7299 -5.8896 -5.5851 43 1 0.3820 -7.3838 -7.0929 44 1 1.1711 -6.9086 -8.6159 45 1 2.1573 -7.4063 -7.2202 46 1 -1.7859 -6.0920 -9.0275 47 1 0.1823 -6.1079 -2.2002 48 1 -0.2976 -4.4003 -2.3509 49 1 2.0007 -5.5055 -0.6714 50 1 0.4808 -4.8044 -0.0623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268199708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 02:58:13 Heat of formation + Delta-G solvation = 8.450982 kcal Electronic energy + Delta-G solvation = -28781.306171 eV Core-core repulsion = 25001.508046 eV Total energy + Delta-G solvation = -3779.798126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 331.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.18095 -39.61815 -37.86389 -35.75527 -34.22545 -33.90840 -32.22190 -31.16252 -30.87672 -28.84943 -28.16868 -25.90970 -25.51981 -24.27721 -23.46484 -22.66900 -22.21266 -20.73851 -19.91555 -19.29594 -17.73353 -16.96991 -16.68877 -16.65482 -16.27958 -15.20374 -14.84029 -14.79260 -14.56667 -14.31450 -14.09603 -13.91936 -13.78688 -13.55136 -13.30913 -13.16158 -13.04123 -12.86445 -12.68290 -12.52574 -12.28250 -12.08495 -11.80194 -11.25791 -11.21334 -11.01821 -10.91219 -10.66802 -10.56793 -10.35363 -10.32876 -10.19350 -9.97056 -9.86572 -9.84272 -9.70728 -9.61956 -9.40804 -8.77998 -8.51219 -6.55980 -5.74852 -3.28097 0.46697 0.83912 2.41013 2.76907 3.35660 3.40289 3.43204 3.44907 3.98118 4.20657 4.32284 4.37249 4.49514 4.67933 4.71784 4.90395 4.94002 5.03213 5.08140 5.14240 5.23807 5.27908 5.31813 5.35818 5.44847 5.48648 5.50280 5.65261 5.70931 5.74865 5.82245 5.86165 5.90046 6.00203 6.15916 6.19802 6.23554 6.34659 6.37044 6.44460 6.55834 6.62284 6.82439 7.00614 7.16967 7.19936 7.34204 7.52881 7.70134 7.81943 7.90012 8.50081 9.26989 9.87959 10.43705 11.31526 Molecular weight = 331.20amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.002755 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.968471 B =10162.660831 C =10903.173864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.006 3.994 3 C -0.178 4.178 4 C 0.117 3.883 5 N -0.489 5.489 6 C 0.137 3.863 7 C -0.180 4.180 8 C 0.567 3.433 9 O -0.534 6.534 10 N -0.600 5.600 11 C 0.103 3.897 12 C -0.129 4.129 13 C -0.084 4.084 14 C -0.129 4.129 15 C 0.153 3.847 16 N -0.602 5.602 17 C 0.162 3.838 18 C -0.257 4.257 19 H 0.062 0.938 20 C 0.009 3.991 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.289 1.289 26 C -0.128 4.128 27 C 0.112 3.888 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.031 0.969 43 H 0.018 0.982 44 H 0.047 0.953 45 H -0.007 1.007 46 H 0.252 0.748 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.903 9.642 18.446 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.002 4.002 3 C -0.198 4.198 4 C -0.039 4.039 5 N -0.198 5.198 6 C -0.022 4.022 7 C -0.186 4.186 8 C 0.354 3.646 9 O -0.412 6.412 10 N -0.333 5.333 11 C -0.019 4.019 12 C -0.167 4.167 13 C -0.104 4.104 14 C -0.169 4.169 15 C 0.026 3.974 16 N -0.324 5.324 17 C 0.017 3.983 18 C -0.388 4.388 19 H 0.080 0.920 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.216 1.216 26 C -0.167 4.167 27 C -0.010 4.010 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.177 0.823 34 H 0.098 0.902 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.036 0.964 44 H 0.066 0.934 45 H 0.012 0.988 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.230 9.437 18.766 22.560 hybrid contribution -1.480 0.636 -0.741 1.773 sum 6.751 10.072 18.026 21.724 Atomic orbital electron populations 1.20905 0.89449 1.03778 1.03566 1.20386 0.97183 0.91460 0.91197 1.22031 0.95609 0.98617 1.03556 1.22945 0.91728 0.96452 0.92792 1.67720 1.40687 0.98244 1.13116 1.22953 0.89996 0.96702 0.92499 1.20866 0.95633 0.94237 1.07825 1.18082 0.81953 0.83206 0.81367 1.90783 1.32659 1.79330 1.38382 1.48092 1.46547 1.12917 1.25730 1.21875 0.92333 1.01328 0.86376 1.21940 1.01280 0.97692 0.95821 1.21171 0.97871 0.95522 0.95817 1.22228 1.00451 1.01366 0.92889 1.20886 0.93077 0.97801 0.85648 1.43852 1.67492 1.04100 1.16999 1.20726 0.94456 0.84200 0.98884 1.19151 1.05394 0.92930 1.21279 0.91994 1.25290 0.95966 0.96901 1.00831 1.70007 1.20210 1.22277 1.42197 0.86265 0.78730 0.81459 0.80597 1.20221 1.21599 1.21606 1.21982 0.98815 1.02327 0.93527 1.21710 0.98209 0.81852 0.99233 0.89634 0.90619 0.90658 0.84057 0.82220 0.82271 0.90167 0.90931 0.89796 0.91505 0.91519 0.92782 0.91999 0.94023 0.95050 0.96384 0.93383 0.98839 0.93772 0.90601 0.91561 0.91276 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.35 36.00 0.34 -0.79 16 2 C 0.01 0.06 5.95 -103.91 -0.62 -0.56 16 3 C -0.18 -1.42 9.82 -39.50 -0.39 -1.80 16 4 C 0.12 0.96 11.17 -17.47 -0.20 0.76 16 5 N -0.49 -5.01 10.35 -12.91 -0.13 -5.14 16 6 C 0.14 1.38 8.98 -17.13 -0.15 1.22 16 7 C -0.18 -2.00 4.61 -104.82 -0.48 -2.48 16 8 C 0.57 7.19 6.20 -12.33 -0.08 7.11 16 9 O -0.53 -8.28 15.44 5.32 0.08 -8.20 16 10 N -0.60 -6.84 2.98 -174.15 -0.52 -7.36 16 11 C 0.10 1.05 5.54 -3.93 -0.02 1.02 16 12 C -0.13 -1.58 5.13 -26.83 -0.14 -1.72 16 13 C -0.08 -1.12 2.15 -90.58 -0.19 -1.31 16 14 C -0.13 -2.32 5.01 -26.73 -0.13 -2.45 16 15 C 0.15 3.05 5.47 -4.04 -0.02 3.02 16 16 N -0.60 -15.12 2.89 -181.12 -0.52 -15.64 16 17 C 0.16 4.01 9.05 59.85 0.54 4.55 16 18 C -0.26 -7.06 9.54 -15.06 -0.14 -7.20 16 19 H 0.06 1.68 7.83 -52.48 -0.41 1.26 16 20 C 0.01 0.26 5.17 -17.43 -0.09 0.17 16 21 N -0.90 -26.34 11.09 55.49 0.62 -25.73 16 22 Si 0.90 21.71 29.56 -169.99 -5.02 16.68 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C -0.13 -1.58 5.36 -26.61 -0.14 -1.73 16 27 C 0.11 1.25 6.44 -3.71 -0.02 1.23 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.07 0.85 6.69 -51.93 -0.35 0.50 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.16 1.33 7.75 -52.49 -0.41 0.93 16 34 H 0.08 0.78 5.42 -51.93 -0.28 0.50 16 35 H 0.07 0.62 8.14 -51.94 -0.42 0.20 16 36 H 0.08 1.04 6.50 -51.93 -0.34 0.70 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.04 0.80 6.43 -51.93 -0.33 0.47 16 42 H 0.03 0.57 7.94 -51.93 -0.41 0.16 16 43 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 44 H 0.05 1.27 7.23 -51.93 -0.38 0.90 16 45 H -0.01 -0.15 7.96 -51.93 -0.41 -0.56 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.07 0.92 8.14 -51.94 -0.42 0.49 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 LS Contribution 392.88 15.07 5.92 5.92 Total: -1.00 -32.53 392.88 -9.82 -42.35 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.29 Total: -1.92 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.95 Total: -0.96 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.56 Total: -53.87 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.53 -9.82 -42.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268199708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.800 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds